Wall clock time and date at job start Tue Mar 31 2020 15:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47241 * 2 1 4 4 H 1.09005 * 109.47440 * 304.38763 * 3 2 1 5 5 C 1.50695 * 109.47568 * 184.38554 * 3 2 1 6 6 H 1.08000 * 119.99998 * 268.87865 * 5 3 2 7 7 C 1.37878 * 120.00224 * 88.59037 * 5 3 2 8 8 N 1.31508 * 120.00360 * 184.75264 * 7 5 3 9 9 Si 1.86807 * 119.99634 * 4.75950 * 7 5 3 10 10 H 1.48502 * 109.47186 * 88.67729 * 9 7 5 11 11 H 1.48499 * 109.46799 * 208.67615 * 9 7 5 12 12 H 1.48494 * 109.47090 * 328.67671 * 9 7 5 13 13 N 1.46906 * 109.47009 * 64.38585 * 3 2 1 14 14 C 1.46908 * 110.99836 * 256.41721 * 13 3 2 15 15 H 1.09000 * 109.47072 * 37.99897 * 14 13 3 16 16 C 1.50698 * 109.46755 * 157.99782 * 14 13 3 17 17 C 1.38667 * 120.79058 * 39.99761 * 16 14 13 18 18 C 1.38188 * 119.16061 * 179.97438 * 17 16 14 19 19 N 1.31880 * 120.76703 * 0.02562 * 18 17 16 20 20 C 1.31857 * 121.72758 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.62018 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47172 * 5.00064 * 21 20 19 23 23 F 1.39902 * 109.47103 * 124.99687 * 21 20 19 24 24 F 1.39900 * 109.47028 * 244.99578 * 21 20 19 25 25 C 1.38229 * 120.75954 * 359.73972 * 20 19 18 26 26 C 1.52999 * 109.46898 * 277.99452 * 14 13 3 27 27 C 1.53002 * 117.49923 * 248.74478 * 26 14 13 28 28 C 1.52999 * 117.49635 * 180.08906 * 26 14 13 29 29 H 1.08999 * 109.47491 * 57.18612 * 1 2 3 30 30 H 1.09007 * 109.47489 * 177.18197 * 1 2 3 31 31 H 1.08998 * 109.47265 * 297.18067 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00091 * 2 1 3 33 33 H 1.09002 * 109.46989 * 120.00492 * 2 1 3 34 34 H 0.97004 * 120.00331 * 180.02562 * 8 7 5 35 35 H 1.00898 * 110.99823 * 20.36548 * 13 3 2 36 36 H 1.07990 * 120.42108 * 359.95608 * 17 16 14 37 37 H 1.07999 * 119.61303 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.41683 * 180.27091 * 25 20 19 39 39 H 1.08996 * 115.55231 * 34.42296 * 26 14 13 40 40 H 1.08995 * 117.49641 * 0.02562 * 27 26 14 41 41 H 1.08998 * 117.49390 * 145.02078 * 27 26 14 42 42 H 1.08994 * 117.50082 * 214.98420 * 28 26 14 43 43 H 1.09002 * 117.49612 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6139 1.9785 -0.8481 5 6 3.5430 1.4439 -0.1086 6 1 4.1491 1.4389 0.7853 7 6 4.1446 1.4456 -1.3493 8 7 5.4528 1.3526 -1.4459 9 14 3.1012 1.5804 -2.8929 10 1 2.9013 3.0123 -3.2318 11 1 3.7901 0.8972 -4.0171 12 1 1.7830 0.9388 -2.6569 13 7 1.6387 2.1037 1.2489 14 6 0.5065 3.0122 1.0233 15 1 -0.1793 2.5662 0.3030 16 6 -0.2155 3.2478 2.3250 17 6 0.4891 3.4109 3.5081 18 6 -0.2072 3.6256 4.6823 19 7 -1.5250 3.6755 4.6857 20 6 -2.2275 3.5247 3.5800 21 6 -3.7319 3.5911 3.6385 22 9 -4.1337 3.9308 4.9348 23 9 -4.1913 4.5593 2.7392 24 9 -4.2673 2.3449 3.2958 25 6 -1.5997 3.3124 2.3670 26 6 1.0231 4.3452 0.4782 27 6 0.9169 5.5698 1.3892 28 6 -0.0096 5.4336 0.1784 29 1 -0.3634 0.5569 -0.8637 30 1 -0.3634 -1.0265 -0.0505 31 1 -0.3634 0.4694 0.9142 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8761 1.3542 -2.3187 35 1 1.4211 1.4253 1.9635 36 1 1.5682 3.3703 3.5119 37 1 0.3342 3.7540 5.6079 38 1 -2.1803 3.1939 1.4641 39 1 1.8907 4.2801 -0.1783 40 1 0.4794 5.4257 2.3771 41 1 1.7145 6.3104 1.3318 42 1 0.1788 6.0847 -0.6752 43 1 -1.0570 5.1998 0.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:49 Heat of formation + Delta-G solvation = -102.060622 kcal Electronic energy + Delta-G solvation = -29051.106217 eV Core-core repulsion = 24681.563503 eV Total energy + Delta-G solvation = -4369.542714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.22911 -48.75720 -48.69400 -41.86403 -39.37231 -37.39693 -34.68172 -33.93471 -33.22160 -32.06229 -29.48049 -27.84604 -26.58022 -24.70059 -24.23280 -23.49422 -23.11205 -21.65274 -20.81648 -19.61620 -19.51647 -19.34963 -18.72497 -17.56770 -17.18843 -16.95868 -16.57761 -16.32418 -15.84412 -15.68079 -15.47733 -15.44952 -15.14470 -14.97834 -14.85354 -14.85046 -14.74869 -14.55342 -14.30208 -14.12610 -13.82903 -13.55703 -13.41138 -12.78529 -12.71399 -12.59832 -12.43224 -12.26405 -12.15392 -11.68993 -11.63476 -11.30483 -11.16363 -10.98531 -10.76195 -10.74088 -10.60232 -10.43142 -9.00704 -8.21377 -6.21093 -0.34946 -0.00559 1.34121 1.36757 1.39208 1.44841 2.37230 2.38165 2.44952 2.72745 2.91537 3.11984 3.30753 3.42760 3.46584 3.60868 3.80289 3.93236 3.98756 4.00739 4.20298 4.27568 4.33089 4.36722 4.46417 4.50724 4.61678 4.64779 4.72241 4.75893 4.81029 5.02558 5.06391 5.12506 5.18541 5.24381 5.27711 5.33394 5.45330 5.51009 5.76141 6.06535 6.55767 6.67676 6.76359 6.86929 7.42670 8.96103 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.003659 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.538154 B = 7651.070800 C = 7878.128235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.196 3.804 4 H 0.030 0.970 5 C -0.483 4.483 6 H 0.035 0.965 7 C 0.013 3.987 8 N -0.953 5.953 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.240 1.240 13 N -0.667 5.667 14 C 0.159 3.841 15 H 0.060 0.940 16 C -0.033 4.033 17 C -0.112 4.112 18 C 0.106 3.894 19 N -0.464 5.464 20 C 0.024 3.976 21 C 0.526 3.474 22 F -0.170 7.170 23 F -0.171 7.171 24 F -0.173 7.173 25 C -0.116 4.116 26 C -0.147 4.147 27 C -0.171 4.171 28 C -0.173 4.173 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.262 0.738 35 H 0.337 0.663 36 H 0.159 0.841 37 H 0.199 0.801 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.375 5.679 8.702 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.087 3.913 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.594 5.594 9 Si 0.751 3.249 10 H -0.198 1.198 11 H -0.220 1.220 12 H -0.163 1.163 13 N -0.298 5.298 14 C 0.049 3.951 15 H 0.077 0.923 16 C -0.041 4.041 17 C -0.132 4.132 18 C -0.051 4.051 19 N -0.173 5.173 20 C -0.115 4.115 21 C 0.470 3.530 22 F -0.151 7.151 23 F -0.152 7.152 24 F -0.154 7.154 25 C -0.137 4.137 26 C -0.167 4.167 27 C -0.208 4.208 28 C -0.210 4.210 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.215 0.785 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.258 6.301 9.318 21.444 hybrid contribution -0.031 -0.791 -1.865 2.026 sum -18.288 5.510 7.452 20.503 Atomic orbital electron populations 1.21863 0.95365 1.02032 1.01240 1.22314 0.95348 0.99567 1.01204 1.19462 0.93396 0.89910 0.88497 0.95169 1.21188 0.91359 1.47401 0.92272 0.94688 1.25719 0.95556 0.95149 1.01951 1.70047 1.10956 1.53465 1.24966 0.86078 0.80480 0.78860 0.79524 1.19807 1.21996 1.16280 1.60627 1.35671 1.23295 1.10170 1.20005 0.90578 0.93060 0.91424 0.92275 1.20299 0.92583 0.95180 0.96057 1.22515 1.03402 0.95149 0.92102 1.23269 0.87794 0.94472 0.99576 1.67208 1.10099 1.11179 1.28847 1.20808 0.92754 1.06091 0.91831 1.17870 0.87224 0.73932 0.73947 1.93209 1.91929 1.92100 1.37845 1.93230 1.90278 1.63646 1.68063 1.93232 1.87796 1.42302 1.92109 1.21753 0.95062 0.98486 0.98377 1.22162 1.01152 0.89561 1.03787 1.23072 1.02494 0.99790 0.95396 1.23066 0.96400 1.01540 1.00010 0.93282 0.91849 0.92471 0.93833 0.92483 0.92934 0.84422 0.82362 0.78454 0.82617 0.89547 0.88471 0.88892 0.88181 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.73 71.98 0.63 -3.51 16 2 C -0.14 -5.29 4.93 30.59 0.15 -5.14 16 3 C 0.20 8.03 1.45 44.16 0.06 8.09 16 4 H 0.03 1.27 4.88 -2.38 -0.01 1.26 16 5 C -0.48 -25.71 9.19 25.60 0.24 -25.48 16 6 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 7 C 0.01 0.70 5.47 84.66 0.46 1.17 16 8 N -0.95 -58.14 13.96 21.45 0.30 -57.84 16 9 Si 0.93 42.16 26.45 68.60 1.81 43.97 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.24 -9.83 6.29 99.48 0.63 -9.21 16 13 N -0.67 -22.48 5.29 -477.15 -2.53 -25.00 16 14 C 0.16 4.39 1.76 44.17 0.08 4.46 16 15 H 0.06 1.62 6.35 -2.39 -0.02 1.60 16 16 C -0.03 -0.74 3.18 -19.67 -0.06 -0.80 16 17 C -0.11 -2.30 7.44 22.36 0.17 -2.14 16 18 C 0.11 1.97 11.18 84.67 0.95 2.92 16 19 N -0.46 -10.45 9.74 -183.88 -1.79 -12.24 16 20 C 0.02 0.52 6.26 42.55 0.27 0.79 16 21 C 0.53 11.35 3.32 71.24 0.24 11.59 16 22 F -0.17 -3.97 16.85 44.97 0.76 -3.21 16 23 F -0.17 -3.55 17.15 44.97 0.77 -2.78 16 24 F -0.17 -3.73 17.28 44.97 0.78 -2.95 16 25 C -0.12 -2.41 8.85 22.36 0.20 -2.22 16 26 C -0.15 -4.31 5.71 -10.79 -0.06 -4.37 16 27 C -0.17 -4.18 9.51 30.62 0.29 -3.88 16 28 C -0.17 -4.01 10.02 30.62 0.31 -3.70 16 29 H 0.05 1.36 8.07 -2.39 -0.02 1.34 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.06 1.43 6.76 -2.39 -0.02 1.42 16 32 H 0.04 1.74 7.25 -2.39 -0.02 1.72 16 33 H 0.06 2.07 8.06 -2.39 -0.02 2.05 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.34 10.39 7.22 -89.70 -0.65 9.75 16 36 H 0.16 3.36 7.80 -2.92 -0.02 3.34 16 37 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.09 3.19 8.05 -2.39 -0.02 3.17 16 40 H 0.10 2.22 5.40 -2.39 -0.01 2.21 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.10 2.08 7.70 -2.39 -0.02 2.06 16 Total: -1.00 -62.70 358.69 4.33 -58.37 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.32 Total: 23.90 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.91 Total: -22.22 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -4.02 Total: -95.08 kcal Atomic # 9 Polarization: -11.25 SS G_CDS: 2.31 Total: -8.94 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.81 Total: 43.97 kcal Total: -62.70 4.33 -58.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.690 kcal (2) G-P(sol) polarization free energy of solvation -62.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds