Wall clock time and date at job start Tue Mar 31 2020 15:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46758 * 2 1 4 4 H 1.09000 * 109.47299 * 305.75513 * 3 2 1 5 5 C 1.50705 * 109.46732 * 185.75544 * 3 2 1 6 6 H 1.08000 * 119.99636 * 239.72576 * 5 3 2 7 7 C 1.37872 * 120.00039 * 60.00149 * 5 3 2 8 8 N 1.31513 * 119.99915 * 359.72337 * 7 5 3 9 9 Si 1.86794 * 120.00121 * 179.72255 * 7 5 3 10 10 H 1.48500 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47112 * 119.99981 * 9 7 5 12 12 H 1.48503 * 109.47566 * 239.99889 * 9 7 5 13 13 N 1.46902 * 109.47291 * 65.75803 * 3 2 1 14 14 C 1.46899 * 111.00007 * 257.46840 * 13 3 2 15 15 H 1.09004 * 109.47238 * 29.49751 * 14 13 3 16 16 C 1.50699 * 109.47407 * 149.50296 * 14 13 3 17 17 C 1.38673 * 120.41478 * 30.77374 * 16 14 13 18 18 C 1.38632 * 118.41812 * 179.78452 * 17 16 14 19 19 C 1.38234 * 119.15893 * 0.51572 * 18 17 16 20 20 N 1.31858 * 120.76173 * 359.72794 * 19 18 17 21 21 C 1.31886 * 121.72744 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.61587 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46872 * 244.87981 * 22 21 20 24 24 F 1.39900 * 109.47314 * 4.87708 * 22 21 20 25 25 F 1.39897 * 109.47492 * 124.87899 * 22 21 20 26 26 C 1.53007 * 109.47054 * 269.50135 * 14 13 3 27 27 C 1.52994 * 117.49715 * 8.48084 * 26 14 13 28 28 C 1.52998 * 117.49640 * 299.82126 * 26 14 13 29 29 H 1.09002 * 109.46909 * 178.31949 * 1 2 3 30 30 H 1.09000 * 109.46710 * 298.31746 * 1 2 3 31 31 H 1.08997 * 109.46963 * 58.31374 * 1 2 3 32 32 H 1.08999 * 109.46828 * 240.00184 * 2 1 3 33 33 H 1.08997 * 109.46966 * 119.99786 * 2 1 3 34 34 H 0.97001 * 120.00231 * 179.97438 * 8 7 5 35 35 H 1.00901 * 111.00037 * 21.42215 * 13 3 2 36 36 H 1.07994 * 120.79565 * 0.02952 * 17 16 14 37 37 H 1.07994 * 120.41974 * 180.21918 * 18 17 16 38 38 H 1.07994 * 119.61623 * 179.74566 * 19 18 17 39 39 H 1.09000 * 115.54675 * 154.14378 * 26 14 13 40 40 H 1.09001 * 117.50334 * 359.97438 * 27 26 14 41 41 H 1.08996 * 117.50179 * 145.02109 * 27 26 14 42 42 H 1.09006 * 117.49270 * 214.97707 * 28 26 14 43 43 H 1.08992 * 117.49950 * 359.97302 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8340 5 6 3.5403 1.4449 -0.1425 6 1 4.1550 1.8900 0.6259 7 6 4.1279 0.8839 -1.2565 8 7 3.3793 0.3418 -2.1921 9 14 5.9871 0.8937 -1.4368 10 1 6.5954 1.5579 -0.2561 11 1 6.4829 -0.5031 -1.5285 12 1 6.3611 1.6336 -2.6688 13 7 1.6671 2.0937 1.2629 14 6 0.5144 2.9849 1.0753 15 1 -0.1102 2.6057 0.2665 16 6 -0.2905 3.0399 2.3482 17 6 0.3313 2.8920 3.5789 18 6 -0.4483 2.9541 4.7235 19 6 -1.8113 3.1492 4.6004 20 7 -2.3692 3.2807 3.4130 21 6 -1.6580 3.2328 2.3033 22 6 -2.3448 3.3895 0.9712 23 9 -2.2291 2.1998 0.2442 24 9 -3.6977 3.6814 1.1754 25 9 -1.7453 4.4325 0.2571 26 6 1.0078 4.3897 0.7228 27 6 2.5010 4.5631 0.4381 28 6 1.9024 5.1002 1.7406 29 1 -0.3633 -1.0273 -0.0301 30 1 -0.3633 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7927 -0.0525 -2.9761 35 1 1.4823 1.4100 1.9815 36 1 1.3979 2.7362 3.6443 37 1 0.0028 2.8467 5.6988 38 1 -2.4261 3.1946 5.4871 39 1 0.3118 5.0024 0.1501 40 1 3.1320 3.6766 0.5023 41 1 2.7874 5.2904 -0.3215 42 1 1.7951 6.1806 1.8371 43 1 2.1390 4.5671 2.6613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:53 Heat of formation + Delta-G solvation = -80.451526 kcal Electronic energy + Delta-G solvation = -30357.135297 eV Core-core repulsion = 25988.529624 eV Total energy + Delta-G solvation = -4368.605673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.07268 -47.54715 -47.52657 -40.65823 -38.02258 -35.24905 -33.29848 -32.68606 -31.83683 -30.13849 -27.59232 -26.36327 -25.41488 -22.94063 -22.78687 -22.48048 -21.53891 -19.83284 -19.18068 -18.59655 -18.43349 -18.37629 -16.68708 -16.30549 -16.07109 -15.45052 -14.90449 -14.69713 -14.52896 -14.27777 -14.14629 -13.96556 -13.89480 -13.67926 -13.61742 -13.56477 -13.35022 -12.90223 -12.82792 -12.45169 -12.22713 -11.71638 -11.57851 -11.31566 -10.99122 -10.88373 -10.79966 -10.51756 -10.12343 -9.95924 -9.93775 -9.84492 -9.76717 -9.65441 -9.44797 -9.18317 -8.97133 -8.36693 -7.39899 -6.01209 -4.04760 0.64430 1.07790 2.56858 3.29156 3.38079 3.39633 3.41562 3.59803 3.99002 4.27224 4.39051 4.47547 4.58805 4.71402 4.76690 4.92349 5.09810 5.20919 5.27006 5.36640 5.41540 5.59913 5.85892 5.91309 5.92378 6.06656 6.11899 6.14000 6.18645 6.26484 6.38977 6.39557 6.56722 6.72695 6.79002 6.94841 7.14178 7.31408 7.39026 7.53693 7.70957 7.83755 8.22019 8.41501 8.49572 9.01260 9.60002 11.04599 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.004633 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.007129 B = 6041.523260 C = 6404.337520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.220 3.780 4 H 0.034 0.966 5 C -0.490 4.490 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.670 5.670 14 C 0.142 3.858 15 H 0.067 0.933 16 C -0.064 4.064 17 C -0.063 4.063 18 C -0.141 4.141 19 C 0.089 3.911 20 N -0.446 5.446 21 C 0.032 3.968 22 C 0.520 3.480 23 F -0.166 7.166 24 F -0.168 7.168 25 F -0.167 7.167 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.181 4.181 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.324 0.676 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 5.725 11.330 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.113 3.887 4 H 0.052 0.948 5 C -0.529 4.529 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.301 5.301 14 C 0.031 3.969 15 H 0.084 0.916 16 C -0.067 4.067 17 C -0.089 4.089 18 C -0.161 4.161 19 C -0.070 4.070 20 N -0.154 5.154 21 C -0.107 4.107 22 C 0.464 3.536 23 F -0.148 7.148 24 F -0.149 7.149 25 F -0.148 7.148 26 C -0.171 4.171 27 C -0.190 4.190 28 C -0.218 4.218 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.117 0.883 40 H 0.163 0.837 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.244 6.269 10.968 15.654 hybrid contribution 0.857 -0.782 -0.407 1.230 sum -8.386 5.487 10.561 14.559 Atomic orbital electron populations 1.21900 0.99298 0.99512 0.99738 1.22244 0.91568 1.01840 1.03055 1.19296 0.95634 0.88721 0.85064 0.94813 1.21148 0.90880 1.36204 1.04651 0.91661 1.24938 0.97931 0.95573 0.95932 1.69873 1.34616 1.39168 1.09589 0.86523 0.85879 0.77486 0.77978 1.19737 1.21341 1.21236 1.61015 1.33113 1.24032 1.11953 1.20223 0.91299 0.94502 0.90852 0.91585 1.20982 0.92711 0.94786 0.98208 1.21682 1.01888 0.94791 0.90498 1.22392 0.95148 0.98443 1.00107 1.22698 0.93115 0.96887 0.94296 1.67152 1.39875 1.10380 0.97970 1.20745 0.91296 1.06050 0.92611 1.17914 0.76726 0.74484 0.84444 1.93251 1.95572 1.46656 1.79278 1.93198 1.33493 1.93211 1.95030 1.93220 1.83139 1.58507 1.79934 1.22278 0.95170 0.95271 1.04430 1.23333 0.95234 1.04238 0.96169 1.22776 1.05994 0.98068 0.94936 0.94657 0.95174 0.93550 0.87978 0.94689 0.93084 0.85790 0.82503 0.83842 0.81857 0.88331 0.83683 0.90740 0.90651 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.68 37.16 0.32 -2.54 16 2 C -0.15 -3.28 5.09 -26.73 -0.14 -3.41 16 3 C 0.22 4.96 1.46 -68.86 -0.10 4.86 16 4 H 0.03 0.87 7.43 -51.93 -0.39 0.49 16 5 C -0.49 -12.24 7.34 -34.44 -0.25 -12.49 16 6 H 0.07 1.64 7.30 -52.49 -0.38 1.26 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.89 -24.29 11.28 55.43 0.63 -23.66 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.67 -12.36 4.04 -102.16 -0.41 -12.77 16 14 C 0.14 2.42 0.87 -68.86 -0.06 2.36 16 15 H 0.07 1.25 3.97 -51.93 -0.21 1.04 16 16 C -0.06 -0.95 4.57 -104.48 -0.48 -1.43 16 17 C -0.06 -0.77 7.89 -39.28 -0.31 -1.08 16 18 C -0.14 -1.37 10.11 -39.44 -0.40 -1.77 16 19 C 0.09 0.94 11.18 -17.54 -0.20 0.75 16 20 N -0.45 -6.26 9.74 -9.47 -0.09 -6.35 16 21 C 0.03 0.48 6.26 -82.59 -0.52 -0.03 16 22 C 0.52 8.19 2.80 36.01 0.10 8.29 16 23 F -0.17 -2.77 15.37 2.25 0.03 -2.73 16 24 F -0.17 -2.60 16.85 2.25 0.04 -2.57 16 25 F -0.17 -2.64 13.87 2.25 0.03 -2.61 16 26 C -0.15 -2.58 5.27 -90.62 -0.48 -3.06 16 27 C -0.15 -2.74 9.60 -26.70 -0.26 -2.99 16 28 C -0.18 -2.76 9.72 -26.69 -0.26 -3.02 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 31 H 0.05 0.94 8.13 -51.93 -0.42 0.51 16 32 H 0.10 2.60 5.93 -51.93 -0.31 2.29 16 33 H 0.03 0.75 8.02 -51.93 -0.42 0.34 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.32 5.68 6.50 -39.29 -0.26 5.43 16 36 H 0.16 1.85 6.85 -52.49 -0.36 1.49 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.10 1.66 6.37 -51.93 -0.33 1.33 16 40 H 0.15 3.00 4.37 -51.93 -0.23 2.77 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.32 6.74 -51.93 -0.35 0.97 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -26.99 345.17 -7.94 -34.94 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.23 Total: 9.26 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.11 Total: -14.18 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.12 Total: -42.79 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.10 Total: -7.91 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.99 -7.94 -34.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.514 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds