Wall clock time and date at job start Tue Mar 31 2020 15:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46758 * 2 1 4 4 H 1.09000 * 109.47299 * 305.75513 * 3 2 1 5 5 C 1.50705 * 109.46732 * 185.75544 * 3 2 1 6 6 H 1.08000 * 119.99636 * 239.72576 * 5 3 2 7 7 C 1.37872 * 120.00039 * 60.00149 * 5 3 2 8 8 N 1.31513 * 119.99915 * 359.72337 * 7 5 3 9 9 Si 1.86794 * 120.00121 * 179.72255 * 7 5 3 10 10 H 1.48500 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47112 * 119.99981 * 9 7 5 12 12 H 1.48503 * 109.47566 * 239.99889 * 9 7 5 13 13 N 1.46902 * 109.47291 * 65.75803 * 3 2 1 14 14 C 1.46899 * 111.00007 * 257.46840 * 13 3 2 15 15 H 1.09004 * 109.47238 * 29.49751 * 14 13 3 16 16 C 1.50699 * 109.47407 * 149.50296 * 14 13 3 17 17 C 1.38673 * 120.41478 * 30.77374 * 16 14 13 18 18 C 1.38632 * 118.41812 * 179.78452 * 17 16 14 19 19 C 1.38234 * 119.15893 * 0.51572 * 18 17 16 20 20 N 1.31858 * 120.76173 * 359.72794 * 19 18 17 21 21 C 1.31886 * 121.72744 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.61587 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46872 * 244.87981 * 22 21 20 24 24 F 1.39900 * 109.47314 * 4.87708 * 22 21 20 25 25 F 1.39897 * 109.47492 * 124.87899 * 22 21 20 26 26 C 1.53007 * 109.47054 * 269.50135 * 14 13 3 27 27 C 1.52994 * 117.49715 * 8.48084 * 26 14 13 28 28 C 1.52998 * 117.49640 * 299.82126 * 26 14 13 29 29 H 1.09002 * 109.46909 * 178.31949 * 1 2 3 30 30 H 1.09000 * 109.46710 * 298.31746 * 1 2 3 31 31 H 1.08997 * 109.46963 * 58.31374 * 1 2 3 32 32 H 1.08999 * 109.46828 * 240.00184 * 2 1 3 33 33 H 1.08997 * 109.46966 * 119.99786 * 2 1 3 34 34 H 0.97001 * 120.00231 * 179.97438 * 8 7 5 35 35 H 1.00901 * 111.00037 * 21.42215 * 13 3 2 36 36 H 1.07994 * 120.79565 * 0.02952 * 17 16 14 37 37 H 1.07994 * 120.41974 * 180.21918 * 18 17 16 38 38 H 1.07994 * 119.61623 * 179.74566 * 19 18 17 39 39 H 1.09000 * 115.54675 * 154.14378 * 26 14 13 40 40 H 1.09001 * 117.50334 * 359.97438 * 27 26 14 41 41 H 1.08996 * 117.50179 * 145.02109 * 27 26 14 42 42 H 1.09006 * 117.49270 * 214.97707 * 28 26 14 43 43 H 1.08992 * 117.49950 * 359.97302 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8340 5 6 3.5403 1.4449 -0.1425 6 1 4.1550 1.8900 0.6259 7 6 4.1279 0.8839 -1.2565 8 7 3.3793 0.3418 -2.1921 9 14 5.9871 0.8937 -1.4368 10 1 6.5954 1.5579 -0.2561 11 1 6.4829 -0.5031 -1.5285 12 1 6.3611 1.6336 -2.6688 13 7 1.6671 2.0937 1.2629 14 6 0.5144 2.9849 1.0753 15 1 -0.1102 2.6057 0.2665 16 6 -0.2905 3.0399 2.3482 17 6 0.3313 2.8920 3.5789 18 6 -0.4483 2.9541 4.7235 19 6 -1.8113 3.1492 4.6004 20 7 -2.3692 3.2807 3.4130 21 6 -1.6580 3.2328 2.3033 22 6 -2.3448 3.3895 0.9712 23 9 -2.2291 2.1998 0.2442 24 9 -3.6977 3.6814 1.1754 25 9 -1.7453 4.4325 0.2571 26 6 1.0078 4.3897 0.7228 27 6 2.5010 4.5631 0.4381 28 6 1.9024 5.1002 1.7406 29 1 -0.3633 -1.0273 -0.0301 30 1 -0.3633 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7927 -0.0525 -2.9761 35 1 1.4823 1.4100 1.9815 36 1 1.3979 2.7362 3.6443 37 1 0.0028 2.8467 5.6988 38 1 -2.4261 3.1946 5.4871 39 1 0.3118 5.0024 0.1501 40 1 3.1320 3.6766 0.5023 41 1 2.7874 5.2904 -0.3215 42 1 1.7951 6.1806 1.8371 43 1 2.1390 4.5671 2.6613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:52 Heat of formation + Delta-G solvation = -94.358481 kcal Electronic energy + Delta-G solvation = -30357.738348 eV Core-core repulsion = 25988.529624 eV Total energy + Delta-G solvation = -4369.208724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.30032 -48.79469 -48.75056 -41.68486 -39.39364 -36.86501 -34.68740 -33.68014 -33.47356 -31.64636 -29.17055 -27.53706 -26.88200 -24.61462 -23.86382 -23.71499 -22.85120 -21.56118 -20.53057 -19.70234 -19.65265 -19.60678 -18.45455 -17.48933 -17.28212 -16.62062 -16.55551 -15.91085 -15.83509 -15.63781 -15.48209 -15.22256 -15.08763 -15.05432 -14.90344 -14.83724 -14.75014 -14.42708 -13.90811 -13.82498 -13.69511 -13.24479 -13.13676 -12.87314 -12.68928 -12.56333 -12.23174 -12.11074 -11.80214 -11.68867 -11.59024 -11.17460 -11.01086 -10.87818 -10.81136 -10.53098 -10.37026 -10.19430 -8.99611 -8.00319 -6.09064 -0.31249 0.14336 1.43649 1.44680 1.48647 1.58312 2.45880 2.46073 2.49141 2.86702 3.02944 3.26380 3.28050 3.34723 3.61048 3.84633 3.93927 4.03846 4.06952 4.24130 4.31282 4.40854 4.42103 4.49352 4.59737 4.65147 4.68569 4.82222 4.95158 5.04049 5.07818 5.10563 5.16123 5.24516 5.37331 5.42498 5.53184 5.58138 5.78273 5.86357 5.94774 6.37721 6.61832 6.65085 6.84020 7.03361 7.59088 9.04180 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.004633 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.007129 B = 6041.523260 C = 6404.337520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C 0.234 3.766 4 H -0.006 1.006 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.009 3.991 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.659 5.659 14 C 0.149 3.851 15 H 0.042 0.958 16 C -0.077 4.077 17 C -0.069 4.069 18 C -0.116 4.116 19 C 0.094 3.906 20 N -0.468 5.468 21 C 0.017 3.983 22 C 0.514 3.486 23 F -0.177 7.177 24 F -0.169 7.169 25 F -0.172 7.172 26 C -0.161 4.161 27 C -0.175 4.175 28 C -0.149 4.149 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.256 0.744 35 H 0.332 0.668 36 H 0.163 0.837 37 H 0.189 0.811 38 H 0.204 0.796 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 6.253 14.855 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 C 0.125 3.875 4 H 0.012 0.988 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.290 5.290 14 C 0.038 3.962 15 H 0.060 0.940 16 C -0.080 4.080 17 C -0.095 4.095 18 C -0.136 4.136 19 C -0.065 4.065 20 N -0.176 5.176 21 C -0.121 4.121 22 C 0.459 3.541 23 F -0.159 7.159 24 F -0.151 7.151 25 F -0.154 7.154 26 C -0.180 4.180 27 C -0.212 4.212 28 C -0.186 4.186 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.150 0.850 36 H 0.180 0.820 37 H 0.206 0.794 38 H 0.221 0.779 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.276 6.807 14.506 18.515 hybrid contribution 0.801 -0.908 -1.407 1.856 sum -8.475 5.898 13.099 16.679 Atomic orbital electron populations 1.21726 0.97207 1.00356 0.99689 1.22086 0.93366 1.01106 1.01615 1.18921 0.94223 0.88708 0.85606 0.98767 1.21419 0.92208 1.34995 1.04206 0.91891 1.25617 1.01515 0.95729 0.95971 1.70018 1.35972 1.40357 1.10049 0.85626 0.81670 0.77198 0.77791 1.18854 1.21363 1.21664 1.60840 1.34336 1.23719 1.10076 1.19999 0.90498 0.93797 0.91872 0.94028 1.20715 0.92417 0.97004 0.97908 1.21847 1.02432 0.94851 0.90350 1.22837 0.94474 0.95236 1.01009 1.23483 0.94209 0.94624 0.94193 1.67181 1.40422 1.11346 0.98663 1.20523 0.91268 1.07852 0.92456 1.18179 0.76822 0.74002 0.85124 1.93221 1.95634 1.47283 1.79729 1.93183 1.33642 1.93189 1.95040 1.93199 1.83224 1.58705 1.80256 1.22292 0.94466 0.95711 1.05547 1.23172 0.95667 1.03811 0.98599 1.22823 1.02764 0.99104 0.93885 0.93150 0.93792 0.95111 0.91285 0.94086 0.93447 0.84978 0.81982 0.79366 0.77923 0.88676 0.86392 0.90751 0.88691 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.68 71.99 0.62 -4.59 16 2 C -0.14 -6.44 5.09 30.60 0.16 -6.29 16 3 C 0.23 10.85 1.46 44.17 0.06 10.92 16 4 H -0.01 -0.30 7.43 -2.39 -0.02 -0.32 16 5 C -0.49 -24.93 7.34 25.60 0.19 -24.74 16 6 H 0.06 3.18 7.30 -2.91 -0.02 3.16 16 7 C 0.01 0.50 5.29 84.65 0.45 0.94 16 8 N -0.92 -52.00 11.28 21.45 0.24 -51.75 16 9 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.66 -24.29 4.04 -477.14 -1.93 -26.22 16 14 C 0.15 5.10 0.87 44.17 0.04 5.14 16 15 H 0.04 1.64 3.97 -2.38 -0.01 1.63 16 16 C -0.08 -2.17 4.57 -19.78 -0.09 -2.26 16 17 C -0.07 -1.46 7.89 22.47 0.18 -1.28 16 18 C -0.12 -1.67 10.11 22.36 0.23 -1.44 16 19 C 0.09 1.56 11.18 84.69 0.95 2.51 16 20 N -0.47 -11.95 9.74 -183.89 -1.79 -13.74 16 21 C 0.02 0.48 6.26 42.54 0.27 0.75 16 22 C 0.51 16.34 2.80 71.24 0.20 16.54 16 23 F -0.18 -6.08 15.37 44.97 0.69 -5.39 16 24 F -0.17 -5.25 16.85 44.97 0.76 -4.50 16 25 F -0.17 -5.61 13.87 44.97 0.62 -4.99 16 26 C -0.16 -5.47 5.27 -10.79 -0.06 -5.53 16 27 C -0.18 -6.33 9.60 30.62 0.29 -6.04 16 28 C -0.15 -4.29 9.72 30.62 0.30 -3.99 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.59 6.57 -2.39 -0.02 1.57 16 31 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.07 3.64 5.93 -2.39 -0.01 3.62 16 33 H 0.04 1.77 8.02 -2.39 -0.02 1.75 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.33 11.30 6.50 -89.69 -0.58 10.71 16 36 H 0.16 3.26 6.85 -2.91 -0.02 3.24 16 37 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.10 3.27 6.37 -2.39 -0.02 3.25 16 40 H 0.12 4.98 4.37 -2.39 -0.01 4.97 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.10 2.68 6.74 -2.39 -0.02 2.66 16 Total: -1.00 -61.28 345.17 4.88 -56.39 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.48 Total: 24.82 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 3.78 Total: -19.37 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.48 Total: -91.71 kcal Atomic # 9 Polarization: -16.95 SS G_CDS: 2.07 Total: -14.88 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -61.28 4.88 -56.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.964 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds