Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 H 1.09001 * 109.47030 * 54.32857 * 3 2 1 5 5 C 1.50696 * 109.47460 * 174.32671 * 3 2 1 6 6 H 1.08002 * 119.99829 * 119.99463 * 5 3 2 7 7 C 1.37881 * 120.00166 * 300.00643 * 5 3 2 8 8 N 1.31518 * 119.99789 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47473 * 59.99375 * 9 7 5 11 11 H 1.48501 * 109.47540 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47107 * 299.99395 * 9 7 5 13 13 N 1.46893 * 109.46970 * 294.33130 * 3 2 1 14 14 C 1.46901 * 111.00312 * 131.77581 * 13 3 2 15 15 H 1.08994 * 109.46825 * 317.09231 * 14 13 3 16 16 C 1.50705 * 109.47166 * 77.09005 * 14 13 3 17 17 C 1.38678 * 120.41236 * 24.72258 * 16 14 13 18 18 C 1.38639 * 118.41394 * 179.78332 * 17 16 14 19 19 C 1.38219 * 119.16045 * 0.47005 * 18 17 16 20 20 N 1.31856 * 120.76395 * 359.77218 * 19 18 17 21 21 C 1.31876 * 121.72775 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.61809 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47590 * 269.97944 * 22 21 20 24 24 F 1.39900 * 109.46940 * 29.98342 * 22 21 20 25 25 F 1.39903 * 109.47082 * 149.97900 * 22 21 20 26 26 C 1.52997 * 109.47404 * 197.08863 * 14 13 3 27 27 C 1.53007 * 117.51664 * 350.41173 * 26 14 13 28 28 C 1.53001 * 117.49716 * 59.04118 * 26 14 13 29 29 H 1.09001 * 109.46851 * 58.94575 * 1 2 3 30 30 H 1.09001 * 109.47579 * 178.94258 * 1 2 3 31 31 H 1.08998 * 109.47625 * 298.94459 * 1 2 3 32 32 H 1.09000 * 109.47318 * 239.99203 * 2 1 3 33 33 H 1.09006 * 109.46791 * 119.99478 * 2 1 3 34 34 H 0.96999 * 119.99527 * 180.02562 * 8 7 5 35 35 H 1.00905 * 111.00294 * 7.81819 * 13 3 2 36 36 H 1.07995 * 120.79639 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.41371 * 180.22421 * 18 17 16 38 38 H 1.07998 * 119.61739 * 179.79290 * 19 18 17 39 39 H 1.08993 * 115.55278 * 204.70975 * 26 14 13 40 40 H 1.08998 * 117.50092 * 214.96369 * 27 26 14 41 41 H 1.09001 * 117.49845 * 359.97438 * 27 26 14 42 42 H 1.09000 * 117.50001 * 359.97438 * 28 26 14 43 43 H 1.08997 * 117.50057 * 145.00240 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 0.8349 5 6 3.5404 1.4448 0.1404 6 1 4.1542 1.8863 -0.6307 7 6 4.1296 0.8831 1.2533 8 7 3.3820 0.3458 2.1926 9 14 5.9894 0.8854 1.4271 10 1 6.4850 2.2854 1.4267 11 1 6.3683 0.2270 2.7031 12 1 6.5937 0.1462 0.2898 13 7 1.6653 2.0943 -1.2619 14 6 1.0578 3.4089 -1.0154 15 1 0.3618 3.3365 -0.1797 16 6 2.1374 4.4072 -0.6850 17 6 3.4370 4.2073 -1.1257 18 6 4.3964 5.1543 -0.8017 19 6 4.0303 6.2531 -0.0474 20 7 2.7855 6.4079 0.3588 21 6 1.8460 5.5303 0.0653 22 6 0.4384 5.7543 0.5548 23 9 0.2804 5.1567 1.8098 24 9 0.1936 7.1278 0.6580 25 9 -0.4657 5.1862 -0.3493 26 6 0.3061 3.8663 -2.2670 27 6 0.5008 3.0498 -3.5464 28 6 -0.8217 2.9692 -2.7810 29 1 -0.3633 0.5301 -0.8804 30 1 -0.3634 -1.0275 -0.0190 31 1 -0.3634 0.4973 0.8993 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7965 -0.0490 2.9756 35 1 1.0488 1.5069 -1.8033 36 1 3.6948 3.3369 -1.7106 37 1 5.4177 5.0328 -1.1313 38 1 4.7724 6.9936 0.2120 39 1 0.1796 4.9437 -2.3720 40 1 0.5022 3.5902 -4.4929 41 1 1.1648 2.1869 -3.4965 42 1 -1.0278 2.0529 -2.2278 43 1 -1.6901 3.4565 -3.2242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -72.908411 kcal Electronic energy + Delta-G solvation = -30534.365596 eV Core-core repulsion = 26166.087017 eV Total energy + Delta-G solvation = -4368.278579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.92093 -47.47118 -47.30441 -40.20641 -38.16831 -35.48861 -33.04216 -32.25156 -31.88508 -30.13590 -27.34568 -26.23329 -25.29553 -23.07523 -22.46523 -22.20840 -22.03167 -19.77655 -19.46464 -18.30481 -18.20737 -18.17007 -16.54468 -16.24902 -15.92076 -15.34424 -14.93044 -14.76458 -14.39385 -14.18772 -14.03434 -13.85291 -13.69134 -13.50535 -13.39826 -13.34164 -13.15674 -12.77251 -12.53805 -12.40465 -12.26561 -11.74529 -11.59685 -11.38331 -11.19991 -11.13479 -10.88838 -10.71701 -10.16194 -10.02118 -9.92262 -9.75445 -9.73605 -9.39420 -9.37886 -9.12726 -8.77843 -8.38382 -7.44717 -6.02937 -4.06721 1.09907 1.62991 2.82166 3.27171 3.33161 3.33887 3.80331 3.87143 4.02273 4.27458 4.36954 4.70485 4.73011 4.92881 4.99818 5.13820 5.26166 5.26840 5.33374 5.38661 5.44790 5.62689 5.67456 5.79381 5.95381 6.04540 6.06826 6.08746 6.12050 6.30170 6.36260 6.46983 6.54595 6.61551 6.75428 6.90322 6.93640 7.06546 7.32080 7.68231 7.81314 7.96127 8.17345 8.33080 8.54248 8.96900 9.57432 11.02548 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.006547 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.536173 B = 4275.844935 C = 5348.955205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.217 3.783 4 H 0.014 0.986 5 C -0.491 4.491 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.680 5.680 14 C 0.153 3.847 15 H 0.057 0.943 16 C -0.050 4.050 17 C -0.013 4.013 18 C -0.153 4.153 19 C 0.090 3.910 20 N -0.457 5.457 21 C 0.024 3.976 22 C 0.519 3.481 23 F -0.171 7.171 24 F -0.173 7.173 25 F -0.166 7.166 26 C -0.143 4.143 27 C -0.173 4.173 28 C -0.183 4.183 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.260 0.740 35 H 0.330 0.670 36 H 0.165 0.835 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 7.765 -8.208 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.110 3.890 4 H 0.032 0.968 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.314 5.314 14 C 0.042 3.958 15 H 0.074 0.926 16 C -0.054 4.054 17 C -0.039 4.039 18 C -0.173 4.173 19 C -0.069 4.069 20 N -0.165 5.165 21 C -0.114 4.114 22 C 0.464 3.536 23 F -0.153 7.153 24 F -0.154 7.154 25 F -0.147 7.147 26 C -0.162 4.162 27 C -0.210 4.210 28 C -0.220 4.220 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.929 8.652 -7.610 12.174 hybrid contribution 0.231 -1.002 0.389 1.100 sum -3.698 7.650 -7.221 11.150 Atomic orbital electron populations 1.21909 0.99526 0.99635 0.99801 1.21971 0.91321 1.00872 1.03252 1.19267 0.95700 0.89609 0.84446 0.96846 1.21200 0.90903 1.36550 1.04348 0.91753 1.24955 0.97813 0.95671 0.95982 1.69848 1.34741 1.39108 1.09459 0.86698 0.86088 0.78187 0.77283 1.20361 1.21487 1.20299 1.60860 1.44900 1.02563 1.23032 1.20017 0.90595 0.90197 0.95026 0.92579 1.20445 0.97117 0.93309 0.94482 1.21743 0.90424 0.96875 0.94869 1.22368 1.01083 0.95008 0.98826 1.22551 0.91804 0.97288 0.95267 1.67045 1.01540 1.28436 1.19499 1.20592 0.93052 0.95523 1.02273 1.18029 0.85997 0.74046 0.75517 1.93244 1.96173 1.83635 1.42208 1.93180 1.95182 1.31127 1.95952 1.93240 1.70076 1.84432 1.66951 1.22427 1.01440 0.97694 0.94603 1.23049 0.99449 1.03643 0.94853 1.22974 0.92591 1.01926 1.04501 0.94842 0.94325 0.93724 0.94164 0.88008 0.92975 0.84903 0.81784 0.84442 0.82405 0.87741 0.89447 0.87015 0.88908 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.78 37.16 0.36 -2.42 16 2 C -0.14 -2.96 5.15 -26.73 -0.14 -3.10 16 3 C 0.22 4.91 1.83 -68.87 -0.13 4.78 16 4 H 0.01 0.36 7.30 -51.93 -0.38 -0.02 16 5 C -0.49 -12.19 7.69 -34.44 -0.26 -12.46 16 6 H 0.06 1.55 5.66 -52.49 -0.30 1.26 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.89 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -12.52 4.23 -102.18 -0.43 -12.95 16 14 C 0.15 2.65 1.70 -68.86 -0.12 2.54 16 15 H 0.06 1.09 5.92 -51.93 -0.31 0.78 16 16 C -0.05 -0.91 4.71 -104.48 -0.49 -1.40 16 17 C -0.01 -0.23 7.71 -39.27 -0.30 -0.53 16 18 C -0.15 -2.31 10.11 -39.44 -0.40 -2.71 16 19 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 20 N -0.46 -8.10 9.96 -9.48 -0.09 -8.19 16 21 C 0.02 0.43 6.29 -82.60 -0.52 -0.09 16 22 C 0.52 9.05 2.99 36.01 0.11 9.15 16 23 F -0.17 -3.24 17.30 2.25 0.04 -3.20 16 24 F -0.17 -2.91 17.04 2.25 0.04 -2.87 16 25 F -0.17 -2.66 11.56 2.25 0.03 -2.63 16 26 C -0.14 -2.06 4.07 -90.62 -0.37 -2.43 16 27 C -0.17 -2.19 9.67 -26.72 -0.26 -2.45 16 28 C -0.18 -2.31 9.84 -26.73 -0.26 -2.57 16 29 H 0.03 0.54 5.83 -51.93 -0.30 0.24 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.33 5.64 4.04 -39.29 -0.16 5.48 16 36 H 0.16 2.91 5.86 -52.49 -0.31 2.60 16 37 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.10 1.49 7.09 -51.93 -0.37 1.12 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.51 6.36 -51.93 -0.33 1.18 16 42 H 0.09 1.22 6.73 -51.93 -0.35 0.87 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -27.22 346.11 -7.87 -35.09 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.20 Total: 9.04 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.07 Total: -11.12 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.10 Total: -45.00 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 0.10 Total: -8.70 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.22 -7.87 -35.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.816 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds