Wall clock time and date at job start Tue Mar 31 2020 15:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 H 1.09001 * 109.47030 * 54.32857 * 3 2 1 5 5 C 1.50696 * 109.47460 * 174.32671 * 3 2 1 6 6 H 1.08002 * 119.99829 * 119.99463 * 5 3 2 7 7 C 1.37881 * 120.00166 * 300.00643 * 5 3 2 8 8 N 1.31518 * 119.99789 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47473 * 59.99375 * 9 7 5 11 11 H 1.48501 * 109.47540 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47107 * 299.99395 * 9 7 5 13 13 N 1.46893 * 109.46970 * 294.33130 * 3 2 1 14 14 C 1.46901 * 111.00312 * 131.77581 * 13 3 2 15 15 H 1.08994 * 109.46825 * 317.09231 * 14 13 3 16 16 C 1.50705 * 109.47166 * 77.09005 * 14 13 3 17 17 C 1.38678 * 120.41236 * 24.72258 * 16 14 13 18 18 C 1.38639 * 118.41394 * 179.78332 * 17 16 14 19 19 C 1.38219 * 119.16045 * 0.47005 * 18 17 16 20 20 N 1.31856 * 120.76395 * 359.77218 * 19 18 17 21 21 C 1.31876 * 121.72775 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.61809 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47590 * 269.97944 * 22 21 20 24 24 F 1.39900 * 109.46940 * 29.98342 * 22 21 20 25 25 F 1.39903 * 109.47082 * 149.97900 * 22 21 20 26 26 C 1.52997 * 109.47404 * 197.08863 * 14 13 3 27 27 C 1.53007 * 117.51664 * 350.41173 * 26 14 13 28 28 C 1.53001 * 117.49716 * 59.04118 * 26 14 13 29 29 H 1.09001 * 109.46851 * 58.94575 * 1 2 3 30 30 H 1.09001 * 109.47579 * 178.94258 * 1 2 3 31 31 H 1.08998 * 109.47625 * 298.94459 * 1 2 3 32 32 H 1.09000 * 109.47318 * 239.99203 * 2 1 3 33 33 H 1.09006 * 109.46791 * 119.99478 * 2 1 3 34 34 H 0.96999 * 119.99527 * 180.02562 * 8 7 5 35 35 H 1.00905 * 111.00294 * 7.81819 * 13 3 2 36 36 H 1.07995 * 120.79639 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.41371 * 180.22421 * 18 17 16 38 38 H 1.07998 * 119.61739 * 179.79290 * 19 18 17 39 39 H 1.08993 * 115.55278 * 204.70975 * 26 14 13 40 40 H 1.08998 * 117.50092 * 214.96369 * 27 26 14 41 41 H 1.09001 * 117.49845 * 359.97438 * 27 26 14 42 42 H 1.09000 * 117.50001 * 359.97438 * 28 26 14 43 43 H 1.08997 * 117.50057 * 145.00240 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 0.8349 5 6 3.5404 1.4448 0.1404 6 1 4.1542 1.8863 -0.6307 7 6 4.1296 0.8831 1.2533 8 7 3.3820 0.3458 2.1926 9 14 5.9894 0.8854 1.4271 10 1 6.4850 2.2854 1.4267 11 1 6.3683 0.2270 2.7031 12 1 6.5937 0.1462 0.2898 13 7 1.6653 2.0943 -1.2619 14 6 1.0578 3.4089 -1.0154 15 1 0.3618 3.3365 -0.1797 16 6 2.1374 4.4072 -0.6850 17 6 3.4370 4.2073 -1.1257 18 6 4.3964 5.1543 -0.8017 19 6 4.0303 6.2531 -0.0474 20 7 2.7855 6.4079 0.3588 21 6 1.8460 5.5303 0.0653 22 6 0.4384 5.7543 0.5548 23 9 0.2804 5.1567 1.8098 24 9 0.1936 7.1278 0.6580 25 9 -0.4657 5.1862 -0.3493 26 6 0.3061 3.8663 -2.2670 27 6 0.5008 3.0498 -3.5464 28 6 -0.8217 2.9692 -2.7810 29 1 -0.3633 0.5301 -0.8804 30 1 -0.3634 -1.0275 -0.0190 31 1 -0.3634 0.4973 0.8993 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7965 -0.0490 2.9756 35 1 1.0488 1.5069 -1.8033 36 1 3.6948 3.3369 -1.7106 37 1 5.4177 5.0328 -1.1313 38 1 4.7724 6.9936 0.2120 39 1 0.1796 4.9437 -2.3720 40 1 0.5022 3.5902 -4.4929 41 1 1.1648 2.1869 -3.4965 42 1 -1.0278 2.0529 -2.2278 43 1 -1.6901 3.4565 -3.2242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:56 Heat of formation + Delta-G solvation = -86.610023 kcal Electronic energy + Delta-G solvation = -30534.959742 eV Core-core repulsion = 26166.087017 eV Total energy + Delta-G solvation = -4368.872726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.30009 -48.82679 -48.72050 -41.50463 -39.47185 -37.01922 -34.49834 -33.73266 -33.46789 -31.63134 -28.98399 -27.69393 -26.73506 -24.77084 -23.68720 -23.55440 -23.13395 -21.51743 -20.73701 -19.67423 -19.58089 -19.53978 -18.34602 -17.60777 -17.28294 -16.67309 -16.51333 -16.16519 -15.79674 -15.53716 -15.49228 -15.26603 -15.11034 -14.89134 -14.87447 -14.80144 -14.59375 -14.22029 -13.95890 -13.86592 -13.67658 -13.30375 -13.08686 -12.85614 -12.67344 -12.56835 -12.50779 -12.22401 -11.88034 -11.52348 -11.42509 -11.26720 -11.19632 -10.83593 -10.69166 -10.55535 -10.35665 -10.07354 -9.07270 -8.00538 -6.09621 -0.19391 0.33642 1.44540 1.45219 1.47198 1.51157 2.46492 2.47537 2.57922 2.87861 2.97521 3.26690 3.33226 3.44187 3.60621 3.83558 4.00528 4.09375 4.14612 4.16619 4.22916 4.37533 4.45137 4.48968 4.51267 4.64600 4.72974 4.77136 4.87426 5.04843 5.08593 5.17730 5.24040 5.28854 5.34579 5.36809 5.43089 5.58553 5.65355 5.80862 5.92912 6.37086 6.55720 6.69169 6.89012 7.01676 7.58027 9.03105 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.006547 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.536173 B = 4275.844935 C = 5348.955205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.228 3.772 4 H -0.031 1.031 5 C -0.490 4.490 6 H 0.072 0.928 7 C 0.006 3.994 8 N -0.924 5.924 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.158 3.842 15 H 0.031 0.969 16 C -0.065 4.065 17 C -0.031 4.031 18 C -0.145 4.145 19 C 0.089 3.911 20 N -0.475 5.475 21 C 0.004 3.996 22 C 0.520 3.480 23 F -0.186 7.186 24 F -0.170 7.170 25 F -0.158 7.158 26 C -0.158 4.158 27 C -0.159 4.159 28 C -0.174 4.174 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.254 0.746 35 H 0.339 0.661 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.198 0.802 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 8.506 -10.265 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.119 3.881 4 H -0.013 1.013 5 C -0.529 4.529 6 H 0.090 0.910 7 C -0.192 4.192 8 N -0.565 5.565 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.300 5.300 14 C 0.047 3.953 15 H 0.048 0.952 16 C -0.068 4.068 17 C -0.057 4.057 18 C -0.164 4.164 19 C -0.070 4.070 20 N -0.184 5.184 21 C -0.133 4.133 22 C 0.465 3.535 23 F -0.167 7.167 24 F -0.151 7.151 25 F -0.139 7.139 26 C -0.176 4.176 27 C -0.196 4.196 28 C -0.210 4.210 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.190 0.810 38 H 0.215 0.785 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.194 9.402 -9.696 13.878 hybrid contribution 0.007 -1.178 0.997 1.543 sum -3.187 8.223 -8.700 12.388 Atomic orbital electron populations 1.21782 0.96882 1.01086 1.00075 1.21811 0.93740 0.99838 1.01687 1.18965 0.94584 0.89817 0.84686 1.01322 1.21562 0.92162 1.35163 1.03979 0.91022 1.25673 1.01487 0.95937 0.96091 1.70018 1.36066 1.40533 1.09925 0.85825 0.81840 0.78425 0.76895 1.19464 1.22453 1.19330 1.60734 1.45539 1.02984 1.20781 1.19925 0.90289 0.89362 0.95705 0.95187 1.20566 0.97755 0.93509 0.94974 1.21812 0.90724 0.97588 0.95593 1.22763 1.02162 0.93938 0.97540 1.23255 0.91542 0.97991 0.94169 1.67090 1.02534 1.28681 1.20114 1.20666 0.93427 0.96156 1.03099 1.18038 0.86301 0.74079 0.75100 1.93210 1.96270 1.83951 1.43279 1.93177 1.95187 1.30835 1.95925 1.93246 1.69835 1.84341 1.66515 1.22300 1.02964 0.98126 0.94233 1.23077 0.99010 1.02768 0.94767 1.23059 0.93096 1.01143 1.03746 0.92610 0.92338 0.95289 0.93671 0.91478 0.93649 0.83939 0.82425 0.81025 0.78536 0.87549 0.87322 0.87804 0.89447 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.78 71.98 0.70 -4.43 16 2 C -0.13 -5.84 5.15 30.59 0.16 -5.68 16 3 C 0.23 10.51 1.83 44.17 0.08 10.59 16 4 H -0.03 -1.70 7.30 -2.39 -0.02 -1.72 16 5 C -0.49 -24.44 7.69 25.60 0.20 -24.24 16 6 H 0.07 3.40 5.66 -2.91 -0.02 3.39 16 7 C 0.01 0.29 5.29 84.66 0.45 0.74 16 8 N -0.92 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.94 41.95 29.54 68.60 2.03 43.98 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 N -0.67 -24.41 4.23 -477.18 -2.02 -26.43 16 14 C 0.16 5.50 1.70 44.17 0.08 5.58 16 15 H 0.03 1.21 5.92 -2.39 -0.01 1.20 16 16 C -0.06 -2.33 4.71 -19.77 -0.09 -2.42 16 17 C -0.03 -1.05 7.71 22.47 0.17 -0.88 16 18 C -0.14 -4.01 10.11 22.36 0.23 -3.79 16 19 C 0.09 2.48 11.18 84.68 0.95 3.43 16 20 N -0.48 -16.40 9.96 -183.90 -1.83 -18.23 16 21 C 0.00 0.14 6.29 42.54 0.27 0.41 16 22 C 0.52 18.40 2.99 71.24 0.21 18.62 16 23 F -0.19 -7.30 17.30 44.97 0.78 -6.52 16 24 F -0.17 -5.72 17.04 44.97 0.77 -4.95 16 25 F -0.16 -5.11 11.56 44.97 0.52 -4.59 16 26 C -0.16 -4.34 4.07 -10.79 -0.04 -4.38 16 27 C -0.16 -3.64 9.67 30.60 0.30 -3.34 16 28 C -0.17 -3.99 9.84 30.60 0.30 -3.69 16 29 H 0.06 1.75 5.83 -2.39 -0.01 1.74 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 3.49 5.94 -2.38 -0.01 3.47 16 34 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.34 11.25 4.04 -89.69 -0.36 10.89 16 36 H 0.16 5.42 5.86 -2.91 -0.02 5.41 16 37 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.20 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.11 2.91 7.09 -2.39 -0.02 2.89 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.10 2.57 6.36 -2.39 -0.02 2.56 16 42 H 0.09 2.12 6.73 -2.39 -0.02 2.10 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -60.44 346.11 5.13 -55.31 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.70 Total: 27.00 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.95 Total: -13.49 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.61 Total: -96.74 kcal Atomic # 9 Polarization: -18.13 SS G_CDS: 2.06 Total: -16.06 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -60.44 5.13 -55.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.299 kcal (2) G-P(sol) polarization free energy of solvation -60.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds