Wall clock time and date at job start Tue Mar 31 2020 15:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47444 * 2 1 4 4 H 1.09002 * 109.47054 * 301.79193 * 3 2 1 5 5 C 1.50697 * 109.47359 * 181.78933 * 3 2 1 6 6 H 1.07997 * 120.00006 * 245.31456 * 5 3 2 7 7 C 1.37877 * 120.00301 * 65.31690 * 5 3 2 8 8 N 1.31513 * 120.00566 * 191.01792 * 7 5 3 9 9 Si 1.86810 * 119.99669 * 11.01165 * 7 5 3 10 10 H 1.48503 * 109.46825 * 94.40607 * 9 7 5 11 11 H 1.48497 * 109.47101 * 214.40765 * 9 7 5 12 12 H 1.48498 * 109.47194 * 334.40893 * 9 7 5 13 13 N 1.46896 * 109.46985 * 61.78835 * 3 2 1 14 14 C 1.46905 * 111.00072 * 197.39208 * 13 3 2 15 15 H 1.08993 * 109.46849 * 345.70759 * 14 13 3 16 16 C 1.50704 * 109.46975 * 225.70718 * 14 13 3 17 17 C 1.38675 * 120.41787 * 332.86234 * 16 14 13 18 18 C 1.38631 * 118.41825 * 180.02562 * 17 16 14 19 19 C 1.38223 * 119.16027 * 0.02562 * 18 17 16 20 20 N 1.31855 * 120.76754 * 359.97438 * 19 18 17 21 21 C 1.31886 * 121.72066 * 359.70469 * 20 19 18 22 22 C 1.50707 * 119.61710 * 180.31616 * 21 20 19 23 23 F 1.39899 * 109.46665 * 243.03736 * 22 21 20 24 24 F 1.39900 * 109.46769 * 3.03160 * 22 21 20 25 25 F 1.39891 * 109.47432 * 123.03564 * 22 21 20 26 26 C 1.52992 * 109.47008 * 105.70770 * 14 13 3 27 27 C 1.53000 * 117.50482 * 6.97320 * 26 14 13 28 28 C 1.53002 * 117.50188 * 298.30797 * 26 14 13 29 29 H 1.09004 * 109.47158 * 180.82511 * 1 2 3 30 30 H 1.09001 * 109.46859 * 300.82452 * 1 2 3 31 31 H 1.08997 * 109.46762 * 60.82333 * 1 2 3 32 32 H 1.09007 * 109.47264 * 239.99984 * 2 1 3 33 33 H 1.08999 * 109.47634 * 120.00516 * 2 1 3 34 34 H 0.96995 * 120.00275 * 179.97438 * 8 7 5 35 35 H 1.00901 * 111.00067 * 73.43721 * 13 3 2 36 36 H 1.07994 * 120.79145 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.41561 * 180.02562 * 18 17 16 38 38 H 1.08006 * 119.61621 * 179.97438 * 19 18 17 39 39 H 1.09006 * 115.54891 * 152.64172 * 26 14 13 40 40 H 1.09008 * 117.49274 * 359.97438 * 27 26 14 41 41 H 1.08997 * 117.50682 * 145.01835 * 27 26 14 42 42 H 1.08997 * 117.49831 * 214.98108 * 28 26 14 43 43 H 1.08999 * 117.49657 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6508 1.9655 -0.8735 5 6 3.5464 1.4427 -0.0444 6 1 4.1112 1.8245 0.7932 7 6 4.2035 0.9555 -1.1542 8 7 5.5023 0.7526 -1.1133 9 14 3.2489 0.5833 -2.7163 10 1 3.3047 1.7586 -3.6223 11 1 3.8490 -0.5936 -3.3946 12 1 1.8343 0.2891 -2.3737 13 7 1.5861 2.1224 1.2204 14 6 1.6886 3.5810 1.0796 15 1 2.3065 3.8199 0.2142 16 6 2.3156 4.1626 2.3205 17 6 2.1910 3.5143 3.5400 18 6 2.7838 4.0864 4.6550 19 6 3.4739 5.2759 4.5151 20 7 3.5719 5.8646 3.3394 21 6 3.0261 5.3460 2.2565 22 6 3.1736 6.0556 0.9352 23 9 1.9122 6.4438 0.4712 24 9 3.9782 7.1879 1.1013 25 9 3.7672 5.1938 0.0067 26 6 0.2914 4.1743 0.8882 27 6 -0.9037 3.2311 1.0402 28 6 -0.4988 3.7367 -0.3468 29 1 -0.3634 -1.0276 0.0148 30 1 -0.3633 0.5266 0.8825 31 1 -0.3633 0.5010 -0.8973 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9645 0.4095 -1.8940 35 1 2.1001 1.7999 2.0266 36 1 1.6445 2.5862 3.6195 37 1 2.7074 3.6088 5.6205 38 1 3.9383 5.7283 5.3789 39 1 0.1670 5.2029 1.2268 40 1 -0.6944 2.1877 1.2763 41 1 -1.8144 3.6391 1.4786 42 1 -1.1434 4.4773 -0.8202 43 1 -0.0231 3.0265 -1.0230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:03 Heat of formation + Delta-G solvation = -74.194137 kcal Electronic energy + Delta-G solvation = -30436.147398 eV Core-core repulsion = 26067.813065 eV Total energy + Delta-G solvation = -4368.334333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.88509 -47.37634 -47.31794 -40.54269 -38.08288 -35.30346 -33.52453 -32.56069 -32.01487 -30.60968 -27.43201 -26.24096 -25.74974 -22.82542 -22.57879 -22.35403 -21.83975 -19.87010 -19.43883 -18.49645 -18.24984 -18.16856 -17.17940 -16.31407 -16.03757 -15.36866 -15.00520 -14.84725 -14.36144 -14.22955 -14.08486 -13.87195 -13.79987 -13.71659 -13.47728 -13.45333 -13.29487 -12.95517 -12.73400 -12.55595 -12.30405 -11.81363 -11.69413 -11.52669 -11.29317 -11.18028 -10.84018 -10.75982 -10.26665 -10.00256 -9.87550 -9.82765 -9.72945 -9.51363 -9.44758 -9.24223 -9.00796 -8.54059 -7.56199 -6.16382 -4.15684 0.75815 1.17163 2.73340 3.24067 3.33477 3.36409 3.50210 3.76368 4.11886 4.22072 4.35938 4.58162 4.66230 4.72982 4.80327 4.98953 5.09326 5.17790 5.23727 5.28671 5.34968 5.50040 5.61763 5.92782 5.93843 5.99756 6.02540 6.08524 6.13243 6.20211 6.28028 6.34752 6.47437 6.52333 6.67829 6.70490 6.85089 7.02435 7.13337 7.25726 7.50038 7.65266 7.85781 8.20477 8.39205 8.86839 9.48472 10.96598 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.005904 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.289585 B = 4741.720256 C = 5259.263492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C 0.186 3.814 4 H 0.034 0.966 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.858 3.142 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.244 1.244 13 N -0.667 5.667 14 C 0.138 3.862 15 H 0.095 0.905 16 C -0.065 4.065 17 C -0.068 4.068 18 C -0.140 4.140 19 C 0.089 3.911 20 N -0.445 5.445 21 C 0.036 3.964 22 C 0.518 3.482 23 F -0.171 7.171 24 F -0.169 7.169 25 F -0.154 7.154 26 C -0.145 4.145 27 C -0.164 4.164 28 C -0.176 4.176 29 H 0.031 0.969 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.335 0.665 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.649 6.796 9.101 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.685 3.315 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.168 1.168 13 N -0.298 5.298 14 C 0.027 3.973 15 H 0.112 0.888 16 C -0.068 4.068 17 C -0.094 4.094 18 C -0.160 4.160 19 C -0.070 4.070 20 N -0.153 5.153 21 C -0.103 4.103 22 C 0.463 3.537 23 F -0.153 7.153 24 F -0.150 7.150 25 F -0.135 7.135 26 C -0.164 4.164 27 C -0.201 4.201 28 C -0.213 4.213 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.182 0.818 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.680 7.505 8.695 15.021 hybrid contribution 0.472 -0.712 -0.972 1.294 sum -9.208 6.793 7.723 13.805 Atomic orbital electron populations 1.21838 0.97793 0.99196 1.01414 1.21908 0.93521 0.98869 1.01033 1.19650 0.93879 0.90598 0.88157 0.94859 1.21625 0.90070 1.43034 1.04175 0.91269 1.24932 0.94604 0.94136 0.98642 1.69953 1.08604 1.44224 1.29934 0.87321 0.82076 0.78142 0.83963 1.20716 1.21368 1.16765 1.61015 1.59952 1.01291 1.07492 1.20205 0.93661 0.90020 0.93405 0.88757 1.21001 0.94525 0.93415 0.97843 1.21566 0.97013 0.99944 0.90856 1.22342 0.97006 0.96530 1.00084 1.22696 0.96945 0.93071 0.94265 1.67157 1.16551 1.33126 0.98470 1.20763 1.01204 0.95211 0.93083 1.17922 0.74269 0.77096 0.84460 1.93208 1.40753 1.91395 1.89909 1.93192 1.73725 1.52535 1.95598 1.93311 1.83642 1.69160 1.67410 1.22298 0.91900 0.98242 1.03957 1.23082 0.96246 1.01844 0.98959 1.22896 1.03393 1.03510 0.91499 0.95036 0.91805 0.94129 0.92585 0.92943 0.92689 0.84615 0.82819 0.83864 0.81850 0.88483 0.85917 0.90677 0.89903 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.71 37.16 0.36 -2.04 16 2 C -0.12 -2.29 4.91 -26.73 -0.13 -2.42 16 3 C 0.19 3.94 1.31 -68.87 -0.09 3.85 16 4 H 0.03 0.75 5.12 -51.93 -0.27 0.49 16 5 C -0.55 -14.35 8.54 -34.44 -0.29 -14.65 16 6 H 0.07 2.00 8.05 -52.49 -0.42 1.58 16 7 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 8 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 9 Si 0.86 20.56 25.78 -169.99 -4.38 16.17 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.24 -5.37 5.19 56.52 0.29 -5.08 16 13 N -0.67 -11.72 3.47 -102.17 -0.35 -12.07 16 14 C 0.14 2.39 1.77 -68.86 -0.12 2.27 16 15 H 0.09 1.95 4.67 -51.93 -0.24 1.71 16 16 C -0.06 -1.04 4.90 -104.48 -0.51 -1.55 16 17 C -0.07 -0.89 8.90 -39.27 -0.35 -1.24 16 18 C -0.14 -1.52 10.11 -39.44 -0.40 -1.92 16 19 C 0.09 1.07 11.18 -17.55 -0.20 0.88 16 20 N -0.45 -7.01 9.73 -9.47 -0.09 -7.10 16 21 C 0.04 0.62 6.26 -82.59 -0.52 0.10 16 22 C 0.52 9.14 2.84 36.01 0.10 9.24 16 23 F -0.17 -2.81 14.65 2.25 0.03 -2.78 16 24 F -0.17 -2.95 16.85 2.25 0.04 -2.91 16 25 F -0.15 -3.13 15.10 2.25 0.03 -3.09 16 26 C -0.14 -2.22 4.77 -90.62 -0.43 -2.65 16 27 C -0.16 -2.28 9.85 -26.69 -0.26 -2.54 16 28 C -0.18 -2.64 10.20 -26.69 -0.27 -2.92 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.98 5.27 -51.93 -0.27 0.70 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.20 4.55 -51.93 -0.24 0.97 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.33 5.83 6.09 -39.29 -0.24 5.59 16 36 H 0.15 1.78 6.77 -52.49 -0.36 1.43 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 39 H 0.10 1.45 6.89 -51.93 -0.36 1.09 16 40 H 0.12 1.78 4.44 -51.92 -0.23 1.55 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.10 1.63 6.57 -51.93 -0.34 1.29 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -29.61 343.16 -7.16 -36.77 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.17 Total: 9.06 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.21 Total: -13.46 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.33 Total: -44.94 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 0.10 Total: -8.79 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.38 Total: 16.17 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.61 -7.16 -36.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.424 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds