Wall clock time and date at job start Tue Mar 31 2020 15:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47444 * 2 1 4 4 H 1.09002 * 109.47054 * 301.79193 * 3 2 1 5 5 C 1.50697 * 109.47359 * 181.78933 * 3 2 1 6 6 H 1.07997 * 120.00006 * 245.31456 * 5 3 2 7 7 C 1.37877 * 120.00301 * 65.31690 * 5 3 2 8 8 N 1.31513 * 120.00566 * 191.01792 * 7 5 3 9 9 Si 1.86810 * 119.99669 * 11.01165 * 7 5 3 10 10 H 1.48503 * 109.46825 * 94.40607 * 9 7 5 11 11 H 1.48497 * 109.47101 * 214.40765 * 9 7 5 12 12 H 1.48498 * 109.47194 * 334.40893 * 9 7 5 13 13 N 1.46896 * 109.46985 * 61.78835 * 3 2 1 14 14 C 1.46905 * 111.00072 * 197.39208 * 13 3 2 15 15 H 1.08993 * 109.46849 * 345.70759 * 14 13 3 16 16 C 1.50704 * 109.46975 * 225.70718 * 14 13 3 17 17 C 1.38675 * 120.41787 * 332.86234 * 16 14 13 18 18 C 1.38631 * 118.41825 * 180.02562 * 17 16 14 19 19 C 1.38223 * 119.16027 * 0.02562 * 18 17 16 20 20 N 1.31855 * 120.76754 * 359.97438 * 19 18 17 21 21 C 1.31886 * 121.72066 * 359.70469 * 20 19 18 22 22 C 1.50707 * 119.61710 * 180.31616 * 21 20 19 23 23 F 1.39899 * 109.46665 * 243.03736 * 22 21 20 24 24 F 1.39900 * 109.46769 * 3.03160 * 22 21 20 25 25 F 1.39891 * 109.47432 * 123.03564 * 22 21 20 26 26 C 1.52992 * 109.47008 * 105.70770 * 14 13 3 27 27 C 1.53000 * 117.50482 * 6.97320 * 26 14 13 28 28 C 1.53002 * 117.50188 * 298.30797 * 26 14 13 29 29 H 1.09004 * 109.47158 * 180.82511 * 1 2 3 30 30 H 1.09001 * 109.46859 * 300.82452 * 1 2 3 31 31 H 1.08997 * 109.46762 * 60.82333 * 1 2 3 32 32 H 1.09007 * 109.47264 * 239.99984 * 2 1 3 33 33 H 1.08999 * 109.47634 * 120.00516 * 2 1 3 34 34 H 0.96995 * 120.00275 * 179.97438 * 8 7 5 35 35 H 1.00901 * 111.00067 * 73.43721 * 13 3 2 36 36 H 1.07994 * 120.79145 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.41561 * 180.02562 * 18 17 16 38 38 H 1.08006 * 119.61621 * 179.97438 * 19 18 17 39 39 H 1.09006 * 115.54891 * 152.64172 * 26 14 13 40 40 H 1.09008 * 117.49274 * 359.97438 * 27 26 14 41 41 H 1.08997 * 117.50682 * 145.01835 * 27 26 14 42 42 H 1.08997 * 117.49831 * 214.98108 * 28 26 14 43 43 H 1.08999 * 117.49657 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6508 1.9655 -0.8735 5 6 3.5464 1.4427 -0.0444 6 1 4.1112 1.8245 0.7932 7 6 4.2035 0.9555 -1.1542 8 7 5.5023 0.7526 -1.1133 9 14 3.2489 0.5833 -2.7163 10 1 3.3047 1.7586 -3.6223 11 1 3.8490 -0.5936 -3.3946 12 1 1.8343 0.2891 -2.3737 13 7 1.5861 2.1224 1.2204 14 6 1.6886 3.5810 1.0796 15 1 2.3065 3.8199 0.2142 16 6 2.3156 4.1626 2.3205 17 6 2.1910 3.5143 3.5400 18 6 2.7838 4.0864 4.6550 19 6 3.4739 5.2759 4.5151 20 7 3.5719 5.8646 3.3394 21 6 3.0261 5.3460 2.2565 22 6 3.1736 6.0556 0.9352 23 9 1.9122 6.4438 0.4712 24 9 3.9782 7.1879 1.1013 25 9 3.7672 5.1938 0.0067 26 6 0.2914 4.1743 0.8882 27 6 -0.9037 3.2311 1.0402 28 6 -0.4988 3.7367 -0.3468 29 1 -0.3634 -1.0276 0.0148 30 1 -0.3633 0.5266 0.8825 31 1 -0.3633 0.5010 -0.8973 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9645 0.4095 -1.8940 35 1 2.1001 1.7999 2.0266 36 1 1.6445 2.5862 3.6195 37 1 2.7074 3.6088 5.6205 38 1 3.9383 5.7283 5.3789 39 1 0.1670 5.2029 1.2268 40 1 -0.6944 2.1877 1.2763 41 1 -1.8144 3.6391 1.4786 42 1 -1.1434 4.4773 -0.8202 43 1 -0.0231 3.0265 -1.0230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:01 Heat of formation + Delta-G solvation = -91.746109 kcal Electronic energy + Delta-G solvation = -30436.908508 eV Core-core repulsion = 26067.813065 eV Total energy + Delta-G solvation = -4369.095443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.29967 -48.79749 -48.74791 -41.65548 -39.40481 -36.81373 -34.81728 -33.99785 -33.61713 -31.94142 -29.04252 -27.63461 -27.05604 -24.43562 -23.73732 -23.60871 -23.00201 -21.50196 -20.71757 -19.76931 -19.63805 -19.58565 -19.08594 -17.54266 -17.27137 -16.83574 -16.40299 -16.12204 -15.79665 -15.65499 -15.46918 -15.21851 -15.20307 -15.05927 -14.89687 -14.87523 -14.76622 -14.53584 -14.04405 -13.85931 -13.75326 -13.42480 -13.24023 -12.90167 -12.81126 -12.60450 -12.42619 -12.23861 -11.80525 -11.46161 -11.38389 -11.15765 -10.99873 -10.85677 -10.81882 -10.65253 -10.58809 -10.17939 -9.15343 -8.31762 -6.32552 -0.32168 0.12990 1.29623 1.35726 1.42978 1.44087 2.32328 2.43014 2.47064 2.86171 2.99439 3.06297 3.29658 3.41362 3.46222 3.81953 3.87232 4.01945 4.10883 4.19379 4.31277 4.36361 4.43585 4.52681 4.58345 4.74535 4.81687 4.84174 4.92749 5.00630 5.02138 5.05508 5.16745 5.30663 5.39459 5.41993 5.51208 5.53299 5.56426 5.68021 5.88845 6.08370 6.35132 6.58948 6.64199 6.78732 7.34995 8.84786 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.005904 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.289585 B = 4741.720256 C = 5259.263492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C 0.195 3.805 4 H 0.025 0.975 5 C -0.537 4.537 6 H 0.028 0.972 7 C 0.021 3.979 8 N -0.943 5.943 9 Si 0.913 3.087 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.210 1.210 13 N -0.644 5.644 14 C 0.141 3.859 15 H 0.054 0.946 16 C -0.083 4.083 17 C -0.075 4.075 18 C -0.117 4.117 19 C 0.088 3.912 20 N -0.472 5.472 21 C 0.011 3.989 22 C 0.514 3.486 23 F -0.167 7.167 24 F -0.172 7.172 25 F -0.178 7.178 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.184 4.184 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.261 0.739 35 H 0.336 0.664 36 H 0.171 0.829 37 H 0.192 0.808 38 H 0.204 0.796 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.524 6.245 11.299 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C 0.085 3.915 4 H 0.043 0.957 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.738 3.262 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.133 1.133 13 N -0.274 5.274 14 C 0.030 3.970 15 H 0.071 0.929 16 C -0.087 4.087 17 C -0.101 4.101 18 C -0.136 4.136 19 C -0.071 4.071 20 N -0.180 5.180 21 C -0.127 4.127 22 C 0.459 3.541 23 F -0.148 7.148 24 F -0.153 7.153 25 F -0.160 7.160 26 C -0.171 4.171 27 C -0.178 4.178 28 C -0.221 4.221 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.155 0.845 36 H 0.188 0.812 37 H 0.209 0.791 38 H 0.220 0.780 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.595 6.962 10.900 18.053 hybrid contribution 1.440 -0.447 -1.483 2.115 sum -11.154 6.514 9.417 15.986 Atomic orbital electron populations 1.21747 0.94586 1.00830 1.02124 1.21806 0.96305 0.96919 1.00242 1.19479 0.90372 0.92151 0.89517 0.95736 1.21956 0.92743 1.40604 1.02282 0.95332 1.25739 0.95310 0.94693 1.01969 1.70099 1.10564 1.46850 1.30809 0.86445 0.82650 0.77353 0.79781 1.21600 1.21509 1.13255 1.61026 1.58875 1.01573 1.05954 1.20049 0.94496 0.89566 0.92891 0.92856 1.20969 0.95428 0.93771 0.98493 1.21869 0.97382 1.00374 0.90432 1.22849 0.94188 0.95393 1.01205 1.23499 0.96186 0.93372 0.93997 1.67150 1.17265 1.34276 0.99332 1.20591 1.03139 0.96061 0.92868 1.18183 0.74153 0.76871 0.84942 1.93197 1.40287 1.91334 1.90012 1.93168 1.73911 1.52651 1.95603 1.93257 1.84160 1.70013 1.68556 1.22193 0.91288 0.98736 1.04877 1.23119 0.96061 1.01223 0.97443 1.22916 1.03723 1.03772 0.91725 0.92971 0.90342 0.94189 0.94216 0.93022 0.92961 0.84452 0.81164 0.79077 0.77955 0.88208 0.86222 0.88188 0.88269 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.71 71.98 0.70 -3.35 16 2 C -0.11 -4.37 4.91 30.59 0.15 -4.22 16 3 C 0.19 8.23 1.31 44.17 0.06 8.28 16 4 H 0.02 1.11 5.12 -2.39 -0.01 1.10 16 5 C -0.54 -28.96 8.54 25.60 0.22 -28.74 16 6 H 0.03 1.74 8.05 -2.91 -0.02 1.71 16 7 C 0.02 1.21 5.39 84.65 0.46 1.67 16 8 N -0.94 -58.79 13.96 21.45 0.30 -58.50 16 9 Si 0.91 43.29 25.78 68.60 1.77 45.06 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.21 -8.77 5.19 99.48 0.52 -8.25 16 13 N -0.64 -22.16 3.47 -477.17 -1.66 -23.81 16 14 C 0.14 4.90 1.77 44.17 0.08 4.98 16 15 H 0.05 2.32 4.67 -2.39 -0.01 2.31 16 16 C -0.08 -2.65 4.90 -19.77 -0.10 -2.75 16 17 C -0.07 -1.79 8.90 22.47 0.20 -1.59 16 18 C -0.12 -2.10 10.11 22.36 0.23 -1.87 16 19 C 0.09 1.87 11.18 84.69 0.95 2.82 16 20 N -0.47 -14.50 9.73 -183.88 -1.79 -16.29 16 21 C 0.01 0.37 6.26 42.54 0.27 0.64 16 22 C 0.51 19.02 2.84 71.24 0.20 19.23 16 23 F -0.17 -5.70 14.65 44.97 0.66 -5.04 16 24 F -0.17 -6.27 16.85 44.97 0.76 -5.51 16 25 F -0.18 -7.81 15.10 44.97 0.68 -7.13 16 26 C -0.15 -4.48 4.77 -10.80 -0.05 -4.53 16 27 C -0.14 -3.50 9.85 30.62 0.30 -3.20 16 28 C -0.18 -5.25 10.20 30.62 0.31 -4.94 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 2.11 5.27 -2.39 -0.01 2.09 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.64 4.55 -2.38 -0.01 1.62 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.34 11.43 6.09 -89.69 -0.55 10.89 16 36 H 0.17 3.42 6.77 -2.91 -0.02 3.40 16 37 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.10 2.89 6.89 -2.38 -0.02 2.88 16 40 H 0.12 3.05 4.44 -2.38 -0.01 3.04 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.07 2.48 6.57 -2.39 -0.02 2.47 16 Total: -1.00 -69.16 343.16 5.02 -64.14 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.34 Total: 24.65 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 3.97 Total: -17.57 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.15 Total: -98.60 kcal Atomic # 9 Polarization: -19.78 SS G_CDS: 2.10 Total: -17.68 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.77 Total: 45.06 kcal Total: -69.16 5.02 -64.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.608 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds