Wall clock time and date at job start Tue Mar 31 2020 15:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47203 * 2 1 4 4 H 1.09004 * 109.46925 * 305.00372 * 3 2 1 5 5 C 1.52999 * 109.47425 * 64.99750 * 3 2 1 6 6 N 1.46500 * 109.47355 * 185.00280 * 3 2 1 7 7 N 1.28437 * 125.19435 * 300.03989 * 6 3 2 8 8 C 1.30875 * 110.94641 * 179.97438 * 7 6 3 9 9 C 1.39644 * 107.87537 * 359.76121 * 8 7 6 10 10 C 1.36650 * 125.19564 * 119.99738 * 6 3 2 11 11 C 1.46997 * 126.89586 * 0.02562 * 10 6 3 12 12 O 1.21557 * 120.00037 * 179.97438 * 11 10 6 13 13 O 1.34823 * 120.00334 * 359.97438 * 11 10 6 14 14 C 1.45195 * 117.00029 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46890 * 179.97438 * 14 13 11 16 16 C 1.38640 * 119.74694 * 269.72606 * 15 14 13 17 17 C 1.37613 * 120.24538 * 179.72103 * 16 15 14 18 18 C 1.40723 * 119.74731 * 0.57058 * 17 16 15 19 19 C 1.41390 * 120.24379 * 179.68443 * 18 17 16 20 20 H 1.08000 * 119.99831 * 204.39932 * 19 18 17 21 21 C 1.39942 * 120.00505 * 24.40135 * 19 18 17 22 22 N 1.30824 * 119.99904 * 17.85488 * 21 19 18 23 23 Si 1.86803 * 120.00117 * 197.86047 * 21 19 18 24 24 H 1.48493 * 109.47019 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47090 * 119.99971 * 23 21 19 26 26 H 1.48502 * 109.46634 * 239.99577 * 23 21 19 27 27 C 1.40720 * 119.50729 * 359.70195 * 18 17 16 28 28 C 1.37614 * 119.74441 * 0.02562 * 27 18 17 29 29 H 1.09006 * 109.47377 * 59.99885 * 1 2 3 30 30 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46967 * 299.99862 * 1 2 3 32 32 H 1.09005 * 109.46967 * 240.00138 * 2 1 3 33 33 H 1.08994 * 109.47421 * 119.99712 * 2 1 3 34 34 H 1.08999 * 109.47786 * 179.97438 * 5 3 2 35 35 H 1.09008 * 109.47310 * 300.00840 * 5 3 2 36 36 H 1.09010 * 109.46801 * 59.99714 * 5 3 2 37 37 H 1.07997 * 126.06466 * 179.97438 * 8 7 6 38 38 H 1.08007 * 127.31801 * 180.28507 * 9 8 7 39 39 H 1.09001 * 109.47489 * 299.99319 * 14 13 11 40 40 H 1.09003 * 109.47145 * 60.00147 * 14 13 11 41 41 H 1.08002 * 119.87442 * 359.97438 * 16 15 14 42 42 H 1.08005 * 120.12735 * 180.28151 * 17 16 15 43 43 H 0.96998 * 119.99988 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.12528 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.87046 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.5000 1.4443 -0.1204 7 7 4.3119 0.8936 0.7086 8 6 5.5533 1.0640 0.3309 9 6 5.5427 1.7915 -0.8610 10 6 4.2061 2.0314 -1.1324 11 6 3.6569 2.7656 -2.2814 12 8 4.4052 3.2404 -3.1133 13 8 2.3231 2.9123 -2.4126 14 6 1.8518 3.6483 -3.5720 15 6 0.3461 3.7089 -3.5506 16 6 -0.3913 2.7151 -4.1756 17 6 -1.7667 2.7572 -4.1573 18 6 -2.4242 3.8206 -3.5114 19 6 -3.8368 3.8778 -3.4920 20 1 -4.3371 4.8269 -3.3681 21 6 -4.5867 2.7048 -3.6334 22 7 -4.0238 1.5406 -3.4349 23 14 -6.3914 2.8012 -4.1059 24 1 -6.7844 4.2236 -4.2715 25 1 -6.6083 2.0752 -5.3831 26 1 -7.2164 2.1812 -3.0379 27 6 -1.6653 4.8267 -2.8853 28 6 -0.2910 4.7611 -2.9112 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 1.9989 3.1542 1.3075 35 1 0.5488 2.1253 1.3969 36 1 2.0698 1.5875 2.1492 37 1 6.4303 0.7027 0.8474 38 1 6.3958 2.1021 -1.4461 39 1 2.2568 4.6600 -3.5495 40 1 2.1819 3.1449 -4.4808 41 1 0.1155 1.9027 -4.6751 42 1 -2.3393 1.9796 -4.6410 43 1 -4.5435 0.7276 -3.5333 44 1 -2.1596 5.6475 -2.3870 45 1 0.2935 5.5324 -2.4317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262785928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:19 Heat of formation + Delta-G solvation = -3.857563 kcal Electronic energy + Delta-G solvation = -27905.680481 eV Core-core repulsion = 24082.252911 eV Total energy + Delta-G solvation = -3823.427570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.61674 -39.90575 -37.75730 -36.62938 -35.98699 -33.95626 -31.69375 -31.25375 -30.62692 -29.45562 -28.96802 -27.35320 -24.99927 -24.45144 -23.12996 -22.27991 -21.17261 -20.75152 -20.15808 -19.73996 -17.95035 -17.47259 -16.74025 -16.39021 -15.79542 -15.54972 -15.30163 -15.12787 -14.50587 -14.13505 -13.96090 -13.79118 -13.61250 -13.37449 -12.95401 -12.70051 -12.51765 -12.45232 -12.19474 -12.11440 -11.84992 -11.72471 -11.68093 -11.26535 -11.22018 -11.08694 -10.90711 -10.85060 -10.62798 -10.43597 -10.42565 -10.29061 -9.78950 -9.55717 -9.30414 -9.26186 -9.07849 -7.65581 -7.54385 -6.95095 -4.54628 1.09545 2.25518 2.44040 2.54972 2.84991 2.92606 2.98283 3.02928 3.03048 3.24346 3.79603 4.35712 4.43525 4.70934 4.78721 4.85125 5.12073 5.28569 5.35580 5.41457 5.46624 5.53436 5.54528 5.57503 5.60061 5.72138 5.79798 5.89933 5.94086 6.00681 6.09368 6.16296 6.21449 6.23071 6.40465 6.46779 6.61272 6.74202 6.79464 6.89540 7.09490 7.17730 7.43112 7.64688 7.81208 7.87946 7.92189 8.05454 8.10912 8.45867 8.70577 8.78136 9.98324 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.003299 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.642439 B = 8485.323780 C = 9551.045312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.129 3.871 4 H 0.139 0.861 5 C -0.159 4.159 6 N -0.250 5.250 7 N -0.265 5.265 8 C -0.015 4.015 9 C -0.158 4.158 10 C -0.028 4.028 11 C 0.533 3.467 12 O -0.502 6.502 13 O -0.351 6.351 14 C 0.136 3.864 15 C -0.239 4.239 16 C -0.075 4.075 17 C -0.170 4.170 18 C 0.120 3.880 19 C -0.454 4.454 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.782 5.782 23 Si 0.908 3.092 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.230 4.230 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.187 0.813 38 H 0.164 0.836 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.283 0.717 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.693 -2.902 6.163 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.030 3.970 4 H 0.156 0.844 5 C -0.217 4.217 6 N -0.040 5.040 7 N -0.099 5.099 8 C -0.190 4.190 9 C -0.187 4.187 10 C -0.153 4.153 11 C 0.376 3.624 12 O -0.389 6.389 13 O -0.268 6.268 14 C 0.064 3.936 15 C -0.241 4.241 16 C -0.093 4.093 17 C -0.189 4.189 18 C 0.117 3.883 19 C -0.482 4.482 20 H 0.099 0.901 21 C -0.143 4.143 22 N -0.407 5.407 23 Si 0.732 3.268 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.250 4.250 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.204 0.796 38 H 0.181 0.819 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.993 -3.445 6.705 11.735 hybrid contribution -0.174 0.322 -0.890 0.962 sum 8.819 -3.124 5.815 11.016 Atomic orbital electron populations 1.21797 0.93272 1.02531 1.03415 1.21803 0.97530 0.93899 1.03003 1.22307 0.72008 0.99774 1.02918 0.84364 1.22150 1.03183 1.00667 0.95654 1.46343 1.07871 1.35277 1.14547 1.73100 1.01518 1.17267 1.18064 1.23564 0.94552 1.03761 0.97076 1.22156 0.94468 1.03098 0.98952 1.20907 0.92484 1.07857 0.94085 1.19778 0.82010 0.77175 0.83415 1.90852 1.60265 1.46339 1.41450 1.86738 1.21730 1.69438 1.48879 1.21838 0.93046 0.94342 0.84350 1.18640 0.90281 1.01229 1.13914 1.20535 0.94493 0.95854 0.98434 1.21289 0.92339 1.01575 1.03704 1.17685 0.93211 0.90321 0.87070 1.19725 0.91355 0.94340 1.42813 0.90120 1.25964 1.01354 0.94805 0.92227 1.69820 1.38666 0.98981 1.33203 0.86249 0.81525 0.79906 0.79074 1.18268 1.19545 1.19834 1.20963 0.92823 1.03034 1.08132 1.20389 0.94474 0.96176 0.97021 0.90974 0.92079 0.92123 0.91545 0.90881 0.92043 0.89518 0.91313 0.79602 0.81892 0.91771 0.91716 0.89362 0.86248 0.90639 0.88738 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.12 -1.58 5.58 -26.73 -0.15 -1.73 16 3 C 0.13 1.79 3.04 -67.93 -0.21 1.58 16 4 H 0.14 2.19 5.07 -51.93 -0.26 1.93 16 5 C -0.16 -1.94 9.13 37.16 0.34 -1.60 16 6 N -0.25 -3.62 3.09 -50.71 -0.16 -3.77 16 7 N -0.27 -3.64 11.57 30.58 0.35 -3.28 16 8 C -0.01 -0.17 12.03 -17.43 -0.21 -0.38 16 9 C -0.16 -2.03 10.85 -38.97 -0.42 -2.45 16 10 C -0.03 -0.42 6.96 -82.08 -0.57 -1.00 16 11 C 0.53 9.08 7.94 34.28 0.27 9.35 16 12 O -0.50 -9.28 16.71 -19.31 -0.32 -9.61 16 13 O -0.35 -6.19 7.34 -40.83 -0.30 -6.49 16 14 C 0.14 2.44 5.59 36.01 0.20 2.65 16 15 C -0.24 -4.92 5.54 -104.33 -0.58 -5.50 16 16 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 17 C -0.17 -4.10 8.70 -38.87 -0.34 -4.44 16 18 C 0.12 2.97 5.58 -106.82 -0.60 2.38 16 19 C -0.45 -11.23 9.05 -37.75 -0.34 -11.57 16 20 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 21 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 22 N -0.78 -18.72 10.95 55.55 0.61 -18.11 16 23 Si 0.91 17.45 29.60 -169.99 -5.03 12.42 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 28 C -0.06 -1.30 9.67 -39.66 -0.38 -1.69 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.99 6.57 -51.92 -0.34 0.64 16 36 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.19 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.12 2.99 6.16 -52.48 -0.32 2.66 16 43 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 44 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -26.77 380.36 -8.90 -35.67 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.31 Total: 9.40 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.48 Total: -21.96 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.81 Total: -25.16 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.62 Total: -16.09 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -26.77 -8.90 -35.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262785928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.810 kcal (2) G-P(sol) polarization free energy of solvation -26.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds