Wall clock time and date at job start Tue Mar 31 2020 15:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47203 * 2 1 4 4 H 1.09004 * 109.46925 * 305.00372 * 3 2 1 5 5 C 1.52999 * 109.47425 * 64.99750 * 3 2 1 6 6 N 1.46500 * 109.47355 * 185.00280 * 3 2 1 7 7 N 1.28437 * 125.19435 * 300.03989 * 6 3 2 8 8 C 1.30875 * 110.94641 * 179.97438 * 7 6 3 9 9 C 1.39644 * 107.87537 * 359.76121 * 8 7 6 10 10 C 1.36650 * 125.19564 * 119.99738 * 6 3 2 11 11 C 1.46997 * 126.89586 * 0.02562 * 10 6 3 12 12 O 1.21557 * 120.00037 * 179.97438 * 11 10 6 13 13 O 1.34823 * 120.00334 * 359.97438 * 11 10 6 14 14 C 1.45195 * 117.00029 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46890 * 179.97438 * 14 13 11 16 16 C 1.38640 * 119.74694 * 269.72606 * 15 14 13 17 17 C 1.37613 * 120.24538 * 179.72103 * 16 15 14 18 18 C 1.40723 * 119.74731 * 0.57058 * 17 16 15 19 19 C 1.41390 * 120.24379 * 179.68443 * 18 17 16 20 20 H 1.08000 * 119.99831 * 204.39932 * 19 18 17 21 21 C 1.39942 * 120.00505 * 24.40135 * 19 18 17 22 22 N 1.30824 * 119.99904 * 17.85488 * 21 19 18 23 23 Si 1.86803 * 120.00117 * 197.86047 * 21 19 18 24 24 H 1.48493 * 109.47019 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47090 * 119.99971 * 23 21 19 26 26 H 1.48502 * 109.46634 * 239.99577 * 23 21 19 27 27 C 1.40720 * 119.50729 * 359.70195 * 18 17 16 28 28 C 1.37614 * 119.74441 * 0.02562 * 27 18 17 29 29 H 1.09006 * 109.47377 * 59.99885 * 1 2 3 30 30 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46967 * 299.99862 * 1 2 3 32 32 H 1.09005 * 109.46967 * 240.00138 * 2 1 3 33 33 H 1.08994 * 109.47421 * 119.99712 * 2 1 3 34 34 H 1.08999 * 109.47786 * 179.97438 * 5 3 2 35 35 H 1.09008 * 109.47310 * 300.00840 * 5 3 2 36 36 H 1.09010 * 109.46801 * 59.99714 * 5 3 2 37 37 H 1.07997 * 126.06466 * 179.97438 * 8 7 6 38 38 H 1.08007 * 127.31801 * 180.28507 * 9 8 7 39 39 H 1.09001 * 109.47489 * 299.99319 * 14 13 11 40 40 H 1.09003 * 109.47145 * 60.00147 * 14 13 11 41 41 H 1.08002 * 119.87442 * 359.97438 * 16 15 14 42 42 H 1.08005 * 120.12735 * 180.28151 * 17 16 15 43 43 H 0.96998 * 119.99988 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.12528 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.87046 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.5000 1.4443 -0.1204 7 7 4.3119 0.8936 0.7086 8 6 5.5533 1.0640 0.3309 9 6 5.5427 1.7915 -0.8610 10 6 4.2061 2.0314 -1.1324 11 6 3.6569 2.7656 -2.2814 12 8 4.4052 3.2404 -3.1133 13 8 2.3231 2.9123 -2.4126 14 6 1.8518 3.6483 -3.5720 15 6 0.3461 3.7089 -3.5506 16 6 -0.3913 2.7151 -4.1756 17 6 -1.7667 2.7572 -4.1573 18 6 -2.4242 3.8206 -3.5114 19 6 -3.8368 3.8778 -3.4920 20 1 -4.3371 4.8269 -3.3681 21 6 -4.5867 2.7048 -3.6334 22 7 -4.0238 1.5406 -3.4349 23 14 -6.3914 2.8012 -4.1059 24 1 -6.7844 4.2236 -4.2715 25 1 -6.6083 2.0752 -5.3831 26 1 -7.2164 2.1812 -3.0379 27 6 -1.6653 4.8267 -2.8853 28 6 -0.2910 4.7611 -2.9112 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 1.9989 3.1542 1.3075 35 1 0.5488 2.1253 1.3969 36 1 2.0698 1.5875 2.1492 37 1 6.4303 0.7027 0.8474 38 1 6.3958 2.1021 -1.4461 39 1 2.2568 4.6600 -3.5495 40 1 2.1819 3.1449 -4.4808 41 1 0.1155 1.9027 -4.6751 42 1 -2.3393 1.9796 -4.6410 43 1 -4.5435 0.7276 -3.5333 44 1 -2.1596 5.6475 -2.3870 45 1 0.2935 5.5324 -2.4317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262785928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:18 Heat of formation + Delta-G solvation = -14.104754 kcal Electronic energy + Delta-G solvation = -27906.124832 eV Core-core repulsion = 24082.252911 eV Total energy + Delta-G solvation = -3823.871921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.66442 -41.28684 -39.47557 -37.84434 -37.26202 -35.69368 -32.89947 -32.53436 -32.00157 -31.22795 -29.98255 -28.99643 -26.20126 -25.82851 -24.51876 -23.30430 -22.94981 -21.90481 -21.83025 -20.92205 -19.27200 -19.09427 -18.12127 -17.70229 -17.21795 -16.92476 -16.57186 -16.23583 -15.93919 -15.62963 -15.43165 -15.12770 -14.81232 -14.47106 -14.29503 -14.07964 -13.97549 -13.86275 -13.65987 -13.54697 -13.21132 -12.88681 -12.81141 -12.75489 -12.71513 -12.58846 -12.30566 -12.13498 -11.91642 -11.79722 -11.75862 -11.54334 -11.48895 -11.30064 -11.04641 -10.35159 -10.08795 -9.44112 -9.33573 -8.69235 -6.39430 -0.08215 0.67585 1.11563 1.30335 1.39048 1.42236 1.53348 1.53654 1.76681 1.85633 2.19211 2.69962 3.29901 3.49618 3.72327 3.75237 3.89479 4.00514 4.08731 4.11151 4.21142 4.33349 4.37532 4.42407 4.47305 4.53132 4.53608 4.54592 4.74211 4.86874 4.89723 4.93661 5.00901 5.01374 5.11900 5.18196 5.23781 5.30994 5.34775 5.39392 5.48254 5.64776 5.70834 5.87806 6.05882 6.14216 6.32005 6.48824 6.64591 6.88926 6.96958 7.00545 8.26839 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.003299 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.642439 B = 8485.323780 C = 9551.045312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.127 3.873 4 H 0.115 0.885 5 C -0.153 4.153 6 N -0.256 5.256 7 N -0.275 5.275 8 C -0.004 4.004 9 C -0.147 4.147 10 C -0.059 4.059 11 C 0.536 3.464 12 O -0.521 6.521 13 O -0.355 6.355 14 C 0.139 3.861 15 C -0.230 4.230 16 C -0.077 4.077 17 C -0.190 4.190 18 C 0.092 3.908 19 C -0.490 4.490 20 H 0.078 0.922 21 C 0.039 3.961 22 N -0.812 5.812 23 Si 0.979 3.021 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.243 4.243 28 C -0.062 4.062 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.182 0.818 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.290 0.710 44 H 0.101 0.899 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.133 -3.291 7.280 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.028 3.972 4 H 0.133 0.867 5 C -0.210 4.210 6 N -0.047 5.047 7 N -0.109 5.109 8 C -0.178 4.178 9 C -0.176 4.176 10 C -0.184 4.184 11 C 0.381 3.619 12 O -0.409 6.409 13 O -0.272 6.272 14 C 0.068 3.932 15 C -0.231 4.231 16 C -0.096 4.096 17 C -0.210 4.210 18 C 0.090 3.910 19 C -0.519 4.519 20 H 0.096 0.904 21 C -0.178 4.178 22 N -0.437 5.437 23 Si 0.800 3.200 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.263 4.263 28 C -0.080 4.080 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.200 0.800 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.445 -3.832 7.829 13.604 hybrid contribution -0.395 0.422 -1.182 1.315 sum 10.049 -3.410 6.648 12.522 Atomic orbital electron populations 1.21743 0.93467 1.02930 1.02360 1.21718 0.97157 0.93382 1.03016 1.22242 0.72163 1.00091 1.02733 0.86700 1.22109 1.03547 1.00261 0.95094 1.46349 1.07953 1.35757 1.14654 1.73108 1.02357 1.17370 1.18101 1.24259 0.94937 1.02231 0.96363 1.22541 0.93924 1.01961 0.99197 1.20956 0.93632 1.09453 0.94321 1.20018 0.81327 0.76854 0.83738 1.90835 1.60376 1.47394 1.42320 1.86733 1.22590 1.69440 1.48402 1.21715 0.91240 0.95351 0.84932 1.18885 0.91829 1.00220 1.12157 1.20732 0.93870 0.96602 0.98376 1.21227 0.93261 1.01645 1.04824 1.17998 0.93895 0.91238 0.87892 1.19939 0.91878 0.94966 1.45109 0.90389 1.26736 1.05486 0.94052 0.91526 1.69861 1.40461 0.99683 1.33695 0.85193 0.76123 0.79781 0.78892 1.18212 1.18960 1.18973 1.21145 0.93782 1.03006 1.08348 1.20669 0.94006 0.96796 0.96543 0.94080 0.90985 0.91023 0.92592 0.89616 0.92567 0.88984 0.90354 0.75582 0.80037 0.90484 0.91038 0.87880 0.87874 0.89902 0.88088 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.67 71.98 0.70 -3.07 16 2 C -0.11 -2.85 5.58 30.59 0.17 -2.68 16 3 C 0.13 3.45 3.04 44.99 0.14 3.59 16 4 H 0.12 3.68 5.07 -2.38 -0.01 3.67 16 5 C -0.15 -3.57 9.13 71.98 0.66 -2.91 16 6 N -0.26 -7.07 3.09 -314.34 -0.97 -8.04 16 7 N -0.28 -6.86 11.57 -57.15 -0.66 -7.52 16 8 C 0.00 -0.07 12.03 85.17 1.02 0.95 16 9 C -0.15 -3.39 10.85 22.67 0.25 -3.15 16 10 C -0.06 -1.72 6.96 40.75 0.28 -1.43 16 11 C 0.54 17.80 7.94 70.12 0.56 18.36 16 12 O -0.52 -18.70 16.71 19.65 0.33 -18.37 16 13 O -0.35 -12.35 7.34 -57.36 -0.42 -12.77 16 14 C 0.14 4.89 5.59 71.24 0.40 5.29 16 15 C -0.23 -9.39 5.54 -19.67 -0.11 -9.50 16 16 C -0.08 -3.43 9.67 22.22 0.21 -3.21 16 17 C -0.19 -9.53 8.70 22.73 0.20 -9.34 16 18 C 0.09 4.74 5.58 -21.29 -0.12 4.62 16 19 C -0.49 -25.15 9.05 23.46 0.21 -24.93 16 20 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 21 C 0.04 1.84 5.14 85.26 0.44 2.28 16 22 N -0.81 -40.05 10.95 21.83 0.24 -39.82 16 23 Si 0.98 36.22 29.60 68.60 2.03 38.25 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 26 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 27 C -0.24 -11.33 9.80 22.73 0.22 -11.11 16 28 C -0.06 -2.57 9.67 22.22 0.21 -2.36 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.64 6.57 -2.38 -0.02 1.63 16 32 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 2.02 6.57 -2.38 -0.02 2.00 16 36 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.23 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 40 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 41 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 43 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 44 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -58.75 380.36 6.98 -51.77 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 1.00 Total: 35.10 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 5.44 Total: -38.60 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -1.39 Total: -55.38 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.09 Total: -31.13 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -58.75 6.98 -51.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262785928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.664 kcal (2) G-P(sol) polarization free energy of solvation -58.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds