Wall clock time and date at job start Tue Mar 31 2020 15:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47052 * 2 1 4 4 H 1.09000 * 109.46974 * 55.00092 * 3 2 1 5 5 C 1.52999 * 109.46979 * 294.99998 * 3 2 1 6 6 N 1.46503 * 109.47124 * 175.00186 * 3 2 1 7 7 N 1.28438 * 125.19511 * 59.69542 * 6 3 2 8 8 C 1.30880 * 110.94229 * 179.82264 * 7 6 3 9 9 C 1.39633 * 107.88009 * 0.43403 * 8 7 6 10 10 C 1.36648 * 125.19402 * 240.00411 * 6 3 2 11 11 C 1.47003 * 126.89627 * 359.97196 * 10 6 3 12 12 O 1.21552 * 120.00194 * 180.02562 * 11 10 6 13 13 O 1.34814 * 119.99819 * 0.02562 * 11 10 6 14 14 C 1.45208 * 117.00188 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47316 * 179.97438 * 14 13 11 16 16 C 1.38638 * 119.74563 * 269.72642 * 15 14 13 17 17 C 1.37621 * 120.24537 * 179.72176 * 16 15 14 18 18 C 1.40717 * 119.74102 * 0.56980 * 17 16 15 19 19 C 1.41397 * 120.24083 * 179.68090 * 18 17 16 20 20 H 1.07999 * 119.99999 * 204.40439 * 19 18 17 21 21 C 1.39945 * 120.00369 * 24.40299 * 19 18 17 22 22 N 1.30830 * 119.99414 * 17.85811 * 21 19 18 23 23 Si 1.86794 * 120.00492 * 197.85636 * 21 19 18 24 24 H 1.48498 * 109.47044 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47112 * 119.99740 * 23 21 19 26 26 H 1.48500 * 109.47347 * 239.99779 * 23 21 19 27 27 C 1.40709 * 119.51541 * 359.70726 * 18 17 16 28 28 C 1.37616 * 119.74732 * 359.97438 * 27 18 17 29 29 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47110 * 300.00063 * 1 2 3 31 31 H 1.09001 * 109.46921 * 59.99624 * 1 2 3 32 32 H 1.08991 * 109.47410 * 120.00224 * 2 1 3 33 33 H 1.08999 * 109.46850 * 240.00607 * 2 1 3 34 34 H 1.09011 * 109.47092 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47344 * 299.99867 * 5 3 2 36 36 H 1.08996 * 109.47313 * 60.00643 * 5 3 2 37 37 H 1.08002 * 126.05820 * 180.19886 * 8 7 6 38 38 H 1.08003 * 127.32655 * 179.77735 * 9 8 7 39 39 H 1.09002 * 109.46689 * 300.00281 * 14 13 11 40 40 H 1.08998 * 109.47022 * 59.99623 * 14 13 11 41 41 H 1.08000 * 119.87731 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.12880 * 180.28129 * 17 16 15 43 43 H 0.97001 * 119.99845 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.12637 * 179.97438 * 27 18 17 45 45 H 1.07998 * 119.88201 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 7 3.5001 1.4443 0.1203 7 7 4.3116 0.8895 -0.7062 8 6 5.5534 1.0648 -0.3316 9 6 5.5431 1.7965 0.8577 10 6 4.2062 2.0314 1.1323 11 6 3.6570 2.7655 2.2814 12 8 4.4054 3.2403 3.1132 13 8 2.3233 2.9122 2.4125 14 6 1.8519 3.6482 3.5721 15 6 0.3463 3.7099 3.5499 16 6 -0.2896 4.7657 2.9151 17 6 -1.6640 4.8293 2.8837 18 6 -2.4238 3.8238 3.5095 19 6 -3.8364 3.8822 3.4895 20 1 -4.4085 3.3816 4.2567 21 6 -4.4933 4.5887 2.4757 22 7 -3.8576 4.8941 1.3738 23 14 -6.2776 5.0956 2.6957 24 1 -6.7637 4.6337 4.0207 25 1 -6.3853 6.5747 2.6177 26 1 -7.1023 4.4821 1.6239 27 6 -1.7675 2.7600 4.1557 28 6 -0.3922 2.7133 4.1690 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.9989 3.1542 -1.3076 35 1 2.0698 1.5875 -2.1492 36 1 0.5489 2.1253 -1.3969 37 1 6.4303 0.7040 -0.8485 38 1 6.3964 2.1125 1.4395 39 1 2.1820 3.1448 4.4808 40 1 2.2570 4.6599 3.5496 41 1 0.2958 5.5390 2.4400 42 1 -2.1574 5.6503 2.3848 43 1 -4.3127 5.3841 0.6712 44 1 -2.3410 1.9831 4.6395 45 1 0.1137 1.8976 4.6640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262785929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:23 Heat of formation + Delta-G solvation = -3.857852 kcal Electronic energy + Delta-G solvation = -27885.638339 eV Core-core repulsion = 24062.210757 eV Total energy + Delta-G solvation = -3823.427582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.61720 -39.90668 -37.75787 -36.63603 -35.99019 -33.95589 -31.70681 -31.25745 -30.62761 -29.45477 -28.97056 -27.35310 -25.00617 -24.45455 -23.13375 -22.29227 -21.17348 -20.75750 -20.15813 -19.74299 -17.95243 -17.47265 -16.74161 -16.38801 -15.82552 -15.48185 -15.34772 -15.14339 -14.49668 -14.14309 -13.96595 -13.79814 -13.62182 -13.37467 -12.94970 -12.71059 -12.50578 -12.45710 -12.21372 -12.11473 -11.84815 -11.75036 -11.68434 -11.27457 -11.22436 -11.08777 -10.91732 -10.86272 -10.63577 -10.44149 -10.42595 -10.29104 -9.78945 -9.55753 -9.30458 -9.26196 -9.07975 -7.65594 -7.54418 -6.95061 -4.54663 1.09517 2.25461 2.43940 2.54918 2.84969 2.92559 2.98293 3.02906 3.03059 3.24336 3.79605 4.35562 4.43385 4.69965 4.78667 4.84664 5.11155 5.27681 5.34350 5.39714 5.47040 5.53528 5.54124 5.57456 5.60050 5.71917 5.79628 5.89544 5.93357 5.98069 6.07287 6.16121 6.20506 6.23060 6.36472 6.44893 6.61188 6.74043 6.79393 6.89558 7.09458 7.17735 7.43102 7.64639 7.81178 7.87938 7.92159 8.05382 8.10883 8.45873 8.70568 8.78117 9.98385 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.003269 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.532957 B = 8562.937910 C = 9516.372216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.129 3.871 4 H 0.139 0.861 5 C -0.159 4.159 6 N -0.250 5.250 7 N -0.265 5.265 8 C -0.015 4.015 9 C -0.158 4.158 10 C -0.028 4.028 11 C 0.533 3.467 12 O -0.502 6.502 13 O -0.351 6.351 14 C 0.136 3.864 15 C -0.239 4.239 16 C -0.075 4.075 17 C -0.170 4.170 18 C 0.120 3.880 19 C -0.454 4.454 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.783 5.783 23 Si 0.909 3.091 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.230 4.230 28 C -0.062 4.062 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.187 0.813 38 H 0.164 0.836 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.283 0.717 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.577 -5.373 -4.659 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.030 3.970 4 H 0.156 0.844 5 C -0.217 4.217 6 N -0.040 5.040 7 N -0.100 5.100 8 C -0.189 4.189 9 C -0.187 4.187 10 C -0.153 4.153 11 C 0.376 3.624 12 O -0.389 6.389 13 O -0.268 6.268 14 C 0.064 3.936 15 C -0.241 4.241 16 C -0.093 4.093 17 C -0.189 4.189 18 C 0.117 3.883 19 C -0.482 4.482 20 H 0.099 0.901 21 C -0.144 4.144 22 N -0.407 5.407 23 Si 0.733 3.267 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.249 4.249 28 C -0.081 4.081 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.204 0.796 38 H 0.181 0.819 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.895 -5.556 -5.422 11.807 hybrid contribution -0.155 0.667 0.680 0.965 sum 8.740 -4.890 -4.742 11.081 Atomic orbital electron populations 1.21801 0.93430 1.02397 1.03429 1.21801 0.97436 0.93988 1.03020 1.22306 0.72011 0.99676 1.03008 0.84361 1.22149 1.03258 1.00719 0.95544 1.46343 1.07880 1.35215 1.14597 1.73103 1.01524 1.17218 1.18109 1.23564 0.94542 1.03679 0.97165 1.22155 0.94456 1.03127 0.98935 1.20912 0.92482 1.07901 0.94041 1.19776 0.82012 0.77164 0.83426 1.90851 1.60262 1.46320 1.41473 1.86739 1.21733 1.69415 1.48906 1.21838 0.93054 0.94430 0.84250 1.18640 0.90267 1.01600 1.13551 1.20539 0.94935 0.96436 0.97409 1.21292 0.91843 1.00469 1.05319 1.17682 0.93321 0.89058 0.88226 1.19727 0.91745 1.27659 1.09103 0.90113 1.25969 1.00949 0.93474 0.93975 1.69826 1.38698 1.28308 1.03873 0.86246 0.81536 0.79189 0.79764 1.18262 1.19550 1.19828 1.20957 0.93141 1.00359 1.10467 1.20389 0.94071 0.95843 0.97753 0.92104 0.91193 0.91953 0.91572 0.90822 0.91986 0.91344 0.89449 0.79602 0.81892 0.91770 0.91715 0.89355 0.86251 0.90637 0.88738 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 37.16 0.36 -1.50 16 2 C -0.12 -1.54 5.58 -26.73 -0.15 -1.69 16 3 C 0.13 1.79 3.04 -67.93 -0.21 1.58 16 4 H 0.14 2.19 5.07 -51.93 -0.26 1.93 16 5 C -0.16 -1.99 9.13 37.16 0.34 -1.66 16 6 N -0.25 -3.62 3.09 -50.70 -0.16 -3.77 16 7 N -0.27 -3.63 11.58 30.58 0.35 -3.28 16 8 C -0.01 -0.17 12.03 -17.44 -0.21 -0.38 16 9 C -0.16 -2.03 10.85 -38.97 -0.42 -2.45 16 10 C -0.03 -0.42 6.96 -82.08 -0.57 -1.00 16 11 C 0.53 9.08 7.94 34.28 0.27 9.35 16 12 O -0.50 -9.28 16.71 -19.31 -0.32 -9.61 16 13 O -0.35 -6.19 7.34 -40.80 -0.30 -6.49 16 14 C 0.14 2.45 5.59 36.00 0.20 2.65 16 15 C -0.24 -4.92 5.54 -104.33 -0.58 -5.50 16 16 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 17 C -0.17 -4.12 8.70 -38.87 -0.34 -4.45 16 18 C 0.12 2.97 5.57 -106.83 -0.60 2.38 16 19 C -0.45 -11.23 9.05 -37.74 -0.34 -11.57 16 20 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 21 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 22 N -0.78 -18.80 10.95 55.55 0.61 -18.19 16 23 Si 0.91 17.47 29.60 -169.99 -5.03 12.43 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.23 -5.24 9.80 -38.88 -0.38 -5.62 16 28 C -0.06 -1.30 9.67 -39.66 -0.38 -1.68 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.04 6.56 -51.93 -0.34 0.70 16 37 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 43 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 44 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 45 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -26.84 380.36 -8.90 -35.74 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.31 Total: 9.33 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.48 Total: -21.90 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.81 Total: -25.25 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.62 Total: -16.09 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -26.84 -8.90 -35.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262785929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.885 kcal (2) G-P(sol) polarization free energy of solvation -26.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds