Wall clock time and date at job start Tue Mar 31 2020 15:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47052 * 2 1 4 4 H 1.09000 * 109.46974 * 55.00092 * 3 2 1 5 5 C 1.52999 * 109.46979 * 294.99998 * 3 2 1 6 6 N 1.46503 * 109.47124 * 175.00186 * 3 2 1 7 7 N 1.28438 * 125.19511 * 59.69542 * 6 3 2 8 8 C 1.30880 * 110.94229 * 179.82264 * 7 6 3 9 9 C 1.39633 * 107.88009 * 0.43403 * 8 7 6 10 10 C 1.36648 * 125.19402 * 240.00411 * 6 3 2 11 11 C 1.47003 * 126.89627 * 359.97196 * 10 6 3 12 12 O 1.21552 * 120.00194 * 180.02562 * 11 10 6 13 13 O 1.34814 * 119.99819 * 0.02562 * 11 10 6 14 14 C 1.45208 * 117.00188 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47316 * 179.97438 * 14 13 11 16 16 C 1.38638 * 119.74563 * 269.72642 * 15 14 13 17 17 C 1.37621 * 120.24537 * 179.72176 * 16 15 14 18 18 C 1.40717 * 119.74102 * 0.56980 * 17 16 15 19 19 C 1.41397 * 120.24083 * 179.68090 * 18 17 16 20 20 H 1.07999 * 119.99999 * 204.40439 * 19 18 17 21 21 C 1.39945 * 120.00369 * 24.40299 * 19 18 17 22 22 N 1.30830 * 119.99414 * 17.85811 * 21 19 18 23 23 Si 1.86794 * 120.00492 * 197.85636 * 21 19 18 24 24 H 1.48498 * 109.47044 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47112 * 119.99740 * 23 21 19 26 26 H 1.48500 * 109.47347 * 239.99779 * 23 21 19 27 27 C 1.40709 * 119.51541 * 359.70726 * 18 17 16 28 28 C 1.37616 * 119.74732 * 359.97438 * 27 18 17 29 29 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47110 * 300.00063 * 1 2 3 31 31 H 1.09001 * 109.46921 * 59.99624 * 1 2 3 32 32 H 1.08991 * 109.47410 * 120.00224 * 2 1 3 33 33 H 1.08999 * 109.46850 * 240.00607 * 2 1 3 34 34 H 1.09011 * 109.47092 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47344 * 299.99867 * 5 3 2 36 36 H 1.08996 * 109.47313 * 60.00643 * 5 3 2 37 37 H 1.08002 * 126.05820 * 180.19886 * 8 7 6 38 38 H 1.08003 * 127.32655 * 179.77735 * 9 8 7 39 39 H 1.09002 * 109.46689 * 300.00281 * 14 13 11 40 40 H 1.08998 * 109.47022 * 59.99623 * 14 13 11 41 41 H 1.08000 * 119.87731 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.12880 * 180.28129 * 17 16 15 43 43 H 0.97001 * 119.99845 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.12637 * 179.97438 * 27 18 17 45 45 H 1.07998 * 119.88201 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 7 3.5001 1.4443 0.1203 7 7 4.3116 0.8895 -0.7062 8 6 5.5534 1.0648 -0.3316 9 6 5.5431 1.7965 0.8577 10 6 4.2062 2.0314 1.1323 11 6 3.6570 2.7655 2.2814 12 8 4.4054 3.2403 3.1132 13 8 2.3233 2.9122 2.4125 14 6 1.8519 3.6482 3.5721 15 6 0.3463 3.7099 3.5499 16 6 -0.2896 4.7657 2.9151 17 6 -1.6640 4.8293 2.8837 18 6 -2.4238 3.8238 3.5095 19 6 -3.8364 3.8822 3.4895 20 1 -4.4085 3.3816 4.2567 21 6 -4.4933 4.5887 2.4757 22 7 -3.8576 4.8941 1.3738 23 14 -6.2776 5.0956 2.6957 24 1 -6.7637 4.6337 4.0207 25 1 -6.3853 6.5747 2.6177 26 1 -7.1023 4.4821 1.6239 27 6 -1.7675 2.7600 4.1557 28 6 -0.3922 2.7133 4.1690 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.9989 3.1542 -1.3076 35 1 2.0698 1.5875 -2.1492 36 1 0.5489 2.1253 -1.3969 37 1 6.4303 0.7040 -0.8485 38 1 6.3964 2.1125 1.4395 39 1 2.1820 3.1448 4.4808 40 1 2.2570 4.6599 3.5496 41 1 0.2958 5.5390 2.4400 42 1 -2.1574 5.6503 2.3848 43 1 -4.3127 5.3841 0.6712 44 1 -2.3410 1.9831 4.6395 45 1 0.1137 1.8976 4.6640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262785929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:22 Heat of formation + Delta-G solvation = -14.156152 kcal Electronic energy + Delta-G solvation = -27886.084907 eV Core-core repulsion = 24062.210757 eV Total energy + Delta-G solvation = -3823.874150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.66498 -41.28788 -39.47691 -37.84470 -37.26162 -35.69448 -32.89793 -32.53468 -32.00150 -31.22818 -29.98911 -28.99722 -26.20247 -25.82954 -24.51947 -23.30382 -22.95134 -21.90455 -21.83082 -20.92241 -19.27355 -19.09496 -18.12249 -17.69767 -17.24674 -16.87452 -16.61031 -16.23332 -15.92602 -15.63356 -15.43566 -15.12808 -14.81214 -14.46924 -14.29549 -14.06728 -13.99775 -13.85851 -13.66288 -13.54661 -13.20974 -12.88675 -12.81585 -12.76085 -12.71577 -12.58645 -12.30813 -12.13352 -11.91282 -11.79707 -11.75859 -11.54272 -11.48975 -11.30156 -11.04777 -10.35193 -10.08877 -9.44202 -9.33695 -8.69448 -6.39611 -0.08239 0.67470 1.11448 1.30258 1.38972 1.42205 1.53280 1.53658 1.76617 1.85595 2.19142 2.69837 3.29836 3.49580 3.72203 3.75201 3.89480 4.00512 4.08688 4.11174 4.21181 4.33533 4.37565 4.42433 4.47280 4.52710 4.53435 4.54468 4.74023 4.87132 4.89925 4.93776 5.00812 5.01237 5.11809 5.17852 5.23694 5.30895 5.34809 5.39318 5.48178 5.64696 5.70722 5.87697 6.05769 6.14099 6.31897 6.48806 6.64492 6.88807 6.96845 7.00455 8.26731 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.003269 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.532957 B = 8562.937910 C = 9516.372216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.127 3.873 4 H 0.116 0.884 5 C -0.153 4.153 6 N -0.256 5.256 7 N -0.275 5.275 8 C -0.004 4.004 9 C -0.147 4.147 10 C -0.059 4.059 11 C 0.536 3.464 12 O -0.521 6.521 13 O -0.355 6.355 14 C 0.139 3.861 15 C -0.229 4.229 16 C -0.078 4.078 17 C -0.191 4.191 18 C 0.092 3.908 19 C -0.490 4.490 20 H 0.078 0.922 21 C 0.038 3.962 22 N -0.813 5.813 23 Si 0.980 3.020 24 H -0.258 1.258 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.242 4.242 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.228 0.772 38 H 0.182 0.818 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.290 0.710 44 H 0.101 0.899 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 -6.264 -5.422 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.028 3.972 4 H 0.133 0.867 5 C -0.211 4.211 6 N -0.047 5.047 7 N -0.110 5.110 8 C -0.178 4.178 9 C -0.176 4.176 10 C -0.184 4.184 11 C 0.381 3.619 12 O -0.409 6.409 13 O -0.272 6.272 14 C 0.068 3.932 15 C -0.231 4.231 16 C -0.096 4.096 17 C -0.210 4.210 18 C 0.090 3.910 19 C -0.519 4.519 20 H 0.096 0.904 21 C -0.178 4.178 22 N -0.438 5.438 23 Si 0.800 3.200 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.262 4.262 28 C -0.080 4.080 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.244 0.756 38 H 0.200 0.800 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.307 -6.455 -6.186 13.645 hybrid contribution -0.365 0.882 0.887 1.303 sum 9.943 -5.573 -5.299 12.570 Atomic orbital electron populations 1.21765 0.93424 1.03078 1.02394 1.21722 0.97254 0.93135 1.03156 1.22244 0.72176 1.00264 1.02542 0.86689 1.22103 1.03468 1.00162 0.95330 1.46349 1.07964 1.35691 1.14705 1.73112 1.02367 1.17340 1.18132 1.24259 0.94926 1.02160 0.96446 1.22539 0.93911 1.01997 0.99172 1.20961 0.93631 1.09488 0.94286 1.20014 0.81330 0.76839 0.83750 1.90834 1.60372 1.47367 1.42347 1.86733 1.22591 1.69375 1.48472 1.21716 0.91232 0.95262 0.85029 1.18886 0.91864 1.00547 1.11777 1.20741 0.94309 0.97286 0.97269 1.21236 0.92844 1.00447 1.06520 1.17995 0.93949 0.89908 0.89168 1.19943 0.92165 1.29661 1.10118 0.90374 1.26744 1.05038 0.92849 0.93185 1.69866 1.40542 1.28846 1.04556 0.85188 0.76251 0.78843 0.79680 1.18192 1.18966 1.18961 1.21136 0.94182 1.00204 1.10656 1.20666 0.93501 0.96507 0.97310 0.90580 0.93770 0.91377 0.92229 0.89702 0.92897 0.90311 0.89146 0.75581 0.80033 0.90505 0.91005 0.87817 0.87871 0.89900 0.88097 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.67 71.98 0.70 -2.88 16 2 C -0.11 -2.74 5.58 30.60 0.17 -2.57 16 3 C 0.13 3.46 3.04 44.99 0.14 3.59 16 4 H 0.12 3.69 5.07 -2.39 -0.01 3.68 16 5 C -0.15 -3.75 9.13 71.98 0.66 -3.09 16 6 N -0.26 -7.08 3.09 -314.33 -0.97 -8.05 16 7 N -0.28 -6.87 11.58 -57.16 -0.66 -7.54 16 8 C 0.00 -0.07 12.03 85.17 1.02 0.95 16 9 C -0.15 -3.39 10.85 22.67 0.25 -3.15 16 10 C -0.06 -1.72 6.96 40.75 0.28 -1.43 16 11 C 0.54 17.80 7.94 70.12 0.56 18.36 16 12 O -0.52 -18.69 16.71 19.67 0.33 -18.36 16 13 O -0.35 -12.34 7.34 -57.26 -0.42 -12.76 16 14 C 0.14 4.89 5.59 71.23 0.40 5.28 16 15 C -0.23 -9.38 5.54 -19.67 -0.11 -9.48 16 16 C -0.08 -3.44 9.67 22.22 0.21 -3.23 16 17 C -0.19 -9.59 8.70 22.73 0.20 -9.39 16 18 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 19 C -0.49 -25.15 9.05 23.46 0.21 -24.94 16 20 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 21 C 0.04 1.83 5.14 85.26 0.44 2.27 16 22 N -0.81 -40.20 10.95 21.83 0.24 -39.96 16 23 Si 0.98 36.24 29.60 68.60 2.03 38.27 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 25 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 26 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 27 C -0.24 -11.27 9.80 22.73 0.22 -11.05 16 28 C -0.06 -2.56 9.67 22.22 0.21 -2.34 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.53 6.56 -2.39 -0.02 1.52 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 2.12 6.56 -2.39 -0.02 2.11 16 37 H 0.23 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.08 2.51 8.08 -2.39 -0.02 2.49 16 40 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 41 H 0.10 4.18 8.06 -2.91 -0.02 4.15 16 42 H 0.10 5.43 6.16 -2.91 -0.02 5.42 16 43 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 44 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -58.79 380.36 6.98 -51.81 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.99 Total: 35.06 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 5.44 Total: -38.46 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -1.39 Total: -55.54 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.09 Total: -31.12 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -58.79 6.98 -51.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262785929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.650 kcal (2) G-P(sol) polarization free energy of solvation -58.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds