Wall clock time and date at job start Tue Mar 31 2020 15:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00387 * 2 1 4 4 H 1.09005 * 109.46683 * 359.97438 * 3 2 1 5 5 C 1.50695 * 109.46948 * 240.00099 * 3 2 1 6 6 O 1.21283 * 119.99425 * 239.99865 * 5 3 2 7 7 N 1.34770 * 120.00698 * 59.99673 * 5 3 2 8 8 C 1.46960 * 120.59808 * 180.02562 * 7 5 3 9 9 C 1.53378 * 108.63407 * 235.24876 * 8 7 5 10 10 N 1.46962 * 108.63418 * 310.57585 * 9 8 7 11 11 C 1.34778 * 120.58970 * 235.20242 * 10 9 8 12 12 O 1.21691 * 120.00492 * 5.27018 * 11 10 9 13 13 C 1.46382 * 119.99724 * 184.99090 * 11 10 9 14 14 H 1.07995 * 119.99752 * 351.11658 * 13 11 10 15 15 C 1.40048 * 120.00088 * 171.12395 * 13 11 10 16 16 N 1.30667 * 120.00268 * 170.22236 * 15 13 11 17 17 Si 1.86801 * 119.99790 * 350.21685 * 15 13 11 18 18 H 1.48494 * 109.47256 * 86.12714 * 17 15 13 19 19 H 1.48498 * 109.47307 * 206.12718 * 17 15 13 20 20 H 1.48503 * 109.47303 * 326.12635 * 17 15 13 21 21 C 1.46963 * 118.81554 * 55.47631 * 10 9 8 22 22 C 1.46970 * 120.59126 * 0.02562 * 7 5 3 23 23 C 1.50692 * 109.47225 * 119.99615 * 3 2 1 24 24 C 1.38237 * 120.00204 * 59.72818 * 23 3 2 25 25 C 1.38236 * 120.00202 * 179.78962 * 24 23 3 26 26 C 1.38229 * 119.99898 * 0.43844 * 25 24 23 27 27 C 1.38241 * 120.00094 * 359.81632 * 26 25 24 28 28 C 1.38227 * 119.99996 * 359.97438 * 27 26 25 29 29 H 1.07999 * 119.99737 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00426 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99737 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.61133 * 115.50602 * 8 7 5 33 33 H 1.08998 * 109.61071 * 354.99222 * 8 7 5 34 34 H 1.09006 * 109.60491 * 190.83091 * 9 8 7 35 35 H 1.08993 * 109.60956 * 70.32296 * 9 8 7 36 36 H 0.97000 * 120.00140 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.60170 * 64.26579 * 21 10 9 38 38 H 1.08995 * 109.61316 * 184.77373 * 21 10 9 39 39 H 1.08995 * 109.61052 * 244.49444 * 22 7 5 40 40 H 1.08996 * 109.60897 * 5.01145 * 22 7 5 41 41 H 1.07998 * 119.99725 * 359.97438 * 24 23 3 42 42 H 1.08003 * 119.99537 * 180.27426 * 25 24 23 43 43 H 1.08004 * 120.00185 * 179.83859 * 26 25 24 44 44 H 1.07998 * 119.99807 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.00207 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9299 1.3848 -1.2304 6 8 4.1325 1.4955 -1.1191 7 7 2.3685 1.3330 -2.4545 8 6 3.2010 1.4091 -3.6632 9 6 2.6912 2.5613 -4.5378 10 7 1.2353 2.4282 -4.6878 11 6 0.6737 2.3774 -5.9120 12 8 1.3781 2.3450 -6.9038 13 6 -0.7836 2.3550 -6.0483 14 1 -1.4059 2.2344 -5.1739 15 6 -1.3708 2.4897 -7.3126 16 7 -2.6516 2.2801 -7.4638 17 14 -0.3229 2.9691 -8.7828 18 1 0.2829 1.7506 -9.3773 19 1 -1.1718 3.6449 -9.7965 20 1 0.7535 3.8930 -8.3433 21 6 0.4022 2.3577 -3.4792 22 6 0.9126 1.1995 -2.6046 23 6 2.9299 1.3849 1.2304 24 6 3.9053 0.4307 1.4522 25 6 4.7028 0.5064 2.5787 26 6 4.5190 1.5311 3.4881 27 6 3.5401 2.4823 3.2690 28 6 2.7455 2.4091 2.1404 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 3.1308 0.4719 -4.2154 33 1 4.2378 1.5942 -3.3822 34 1 3.1658 2.5142 -5.5179 35 1 2.9243 3.5133 -4.0611 36 1 -3.0583 2.3730 -8.3395 37 1 0.4761 3.2957 -2.9288 38 1 -0.6353 2.1764 -3.7600 39 1 0.6798 0.2475 -3.0816 40 1 0.4380 1.2463 -1.6245 41 1 4.0461 -0.3722 0.7437 42 1 5.4678 -0.2366 2.7496 43 1 5.1404 1.5888 4.3696 44 1 3.3968 3.2831 3.9794 45 1 1.9810 3.1525 1.9691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263767555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:52 Heat of formation + Delta-G solvation = -32.832852 kcal Electronic energy + Delta-G solvation = -28042.202459 eV Core-core repulsion = 24217.518426 eV Total energy + Delta-G solvation = -3824.684032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.77946 -40.37999 -39.52796 -37.74781 -36.41502 -35.00826 -34.65197 -32.49357 -32.08762 -31.72565 -29.48911 -28.66729 -27.29563 -24.81177 -23.83019 -23.58178 -22.56645 -21.84251 -20.80693 -19.82491 -18.84633 -18.32017 -17.90496 -17.47169 -17.17418 -16.64218 -16.51268 -16.05183 -15.95031 -15.89244 -15.68457 -15.35121 -14.73610 -14.62987 -14.48044 -14.21956 -14.09503 -14.05510 -13.80355 -13.49659 -13.43110 -13.25909 -13.01241 -12.76980 -12.52612 -12.48635 -12.31890 -12.14458 -11.95886 -11.76047 -11.42763 -11.22890 -11.20102 -10.25318 -10.04468 -9.92711 -9.74515 -9.60013 -9.16829 -8.79595 -7.00477 0.42450 0.56351 1.24584 1.31803 1.38686 1.58255 1.62691 1.85506 2.09158 2.35283 2.66249 2.93106 3.31292 3.49426 3.70845 3.83704 3.89907 3.94449 4.00584 4.16238 4.20074 4.20661 4.28497 4.31376 4.41105 4.49218 4.54757 4.64576 4.67022 4.72508 4.79038 4.82258 5.02369 5.05294 5.09567 5.10978 5.19206 5.37803 5.58648 5.64031 5.65745 5.66038 5.66934 5.74752 5.93505 6.14353 6.20049 6.35030 6.61654 7.06897 7.11924 7.96479 8.24702 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026224 B = 0.002857 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.481726 B = 9797.774370 C =10325.738607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.166 4.166 3 C -0.031 4.031 4 H 0.126 0.874 5 C 0.523 3.477 6 O -0.570 6.570 7 N -0.602 5.602 8 C 0.108 3.892 9 C 0.109 3.891 10 N -0.633 5.633 11 C 0.548 3.452 12 O -0.647 6.647 13 C -0.546 4.546 14 H 0.096 0.904 15 C 0.074 3.926 16 N -0.842 5.842 17 Si 1.006 2.994 18 H -0.295 1.295 19 H -0.303 1.303 20 H -0.286 1.286 21 C 0.100 3.900 22 C 0.091 3.909 23 C -0.076 4.076 24 C -0.103 4.103 25 C -0.135 4.135 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.292 0.708 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -2.791 23.044 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C -0.052 4.052 4 H 0.144 0.856 5 C 0.312 3.688 6 O -0.450 6.450 7 N -0.334 5.334 8 C -0.016 4.016 9 C -0.016 4.016 10 N -0.365 5.365 11 C 0.356 3.644 12 O -0.541 6.541 13 C -0.582 4.582 14 H 0.113 0.887 15 C -0.143 4.143 16 N -0.473 5.473 17 Si 0.840 3.160 18 H -0.222 1.222 19 H -0.233 1.233 20 H -0.213 1.213 21 C -0.023 4.023 22 C -0.032 4.032 23 C -0.076 4.076 24 C -0.121 4.121 25 C -0.153 4.153 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.139 4.139 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.698 -2.777 22.563 23.699 hybrid contribution 0.451 0.024 -1.190 1.273 sum 7.149 -2.753 21.372 22.704 Atomic orbital electron populations 1.24232 0.94776 1.04224 0.96166 1.22499 0.96345 0.95796 1.03765 1.19464 0.96477 0.99959 0.89318 0.85588 1.20876 0.88366 0.74983 0.84594 1.90678 1.16489 1.51200 1.86592 1.48091 1.08366 1.71824 1.05152 1.21846 0.95982 0.98497 0.85257 1.21672 0.82048 0.97713 1.00123 1.47590 1.06044 1.77041 1.05865 1.18348 0.89272 0.75365 0.81397 1.90176 1.64964 1.61270 1.37719 1.20998 0.89496 1.51961 0.95732 0.88658 1.26166 0.95730 0.90279 1.02132 1.69541 1.12414 1.38116 1.27221 0.84661 0.76333 0.78623 0.76418 1.22201 1.23272 1.21349 1.22257 0.96605 0.98440 0.85035 1.22766 0.78892 0.98762 1.02740 1.19360 0.96972 0.96303 0.95015 1.20972 0.95410 0.98643 0.97049 1.21364 0.99727 0.99600 0.94607 1.21468 0.98491 0.94606 0.99841 1.21424 0.95765 0.99628 0.97794 1.21297 1.00513 0.97607 0.94527 0.86140 0.86078 0.87198 0.91730 0.88441 0.90334 0.91788 0.89797 0.91011 0.87967 0.91144 0.85092 0.87552 0.84913 0.83978 0.83729 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 12.37 67.78 0.84 -1.12 16 2 C -0.17 -2.76 7.19 25.65 0.18 -2.58 16 3 C -0.03 -0.62 1.94 -13.04 -0.03 -0.65 16 4 H 0.13 1.98 7.10 -2.38 -0.02 1.97 16 5 C 0.52 14.20 6.96 87.66 0.61 14.81 16 6 O -0.57 -19.39 14.53 -3.04 -0.04 -19.44 16 7 N -0.60 -16.53 2.95 -817.09 -2.41 -18.94 16 8 C 0.11 3.35 6.59 86.42 0.57 3.92 16 9 C 0.11 3.88 6.60 86.42 0.57 4.45 16 10 N -0.63 -25.55 2.94 -822.15 -2.42 -27.97 16 11 C 0.55 28.01 7.38 86.36 0.64 28.65 16 12 O -0.65 -36.85 11.56 -4.32 -0.05 -36.90 16 13 C -0.55 -29.09 9.41 24.83 0.23 -28.86 16 14 H 0.10 4.88 5.87 -2.91 -0.02 4.87 16 15 C 0.07 4.03 5.52 85.31 0.47 4.50 16 16 N -0.84 -45.61 13.92 21.83 0.30 -45.31 16 17 Si 1.01 51.71 25.93 68.60 1.78 53.49 16 18 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.29 -15.80 6.50 99.48 0.65 -15.15 16 21 C 0.10 3.09 6.51 86.58 0.56 3.66 16 22 C 0.09 2.23 5.69 86.58 0.49 2.73 16 23 C -0.08 -1.64 4.38 -19.87 -0.09 -1.73 16 24 C -0.10 -2.35 8.04 22.27 0.18 -2.17 16 25 C -0.14 -2.65 10.05 22.27 0.22 -2.43 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 27 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 28 C -0.12 -2.24 9.67 22.27 0.22 -2.03 16 29 H 0.12 1.14 7.32 -2.91 -0.02 1.12 16 30 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.11 1.95 8.00 -2.91 -0.02 1.92 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.99 6.99 -2.39 -0.02 2.97 16 34 H 0.08 3.13 6.99 -2.38 -0.02 3.11 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.29 14.52 8.29 -92.71 -0.77 13.75 16 37 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.10 3.39 5.34 -2.39 -0.01 3.38 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.13 2.30 2.99 -2.39 -0.01 2.29 16 41 H 0.11 2.56 7.95 -2.91 -0.02 2.54 16 42 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.14 1.94 7.95 -2.91 -0.02 1.91 16 Total: -1.00 -71.43 360.50 4.23 -67.20 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.94 Total: 10.49 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 6.12 Total: 17.36 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -4.52 Total: -92.21 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.09 Total: -56.34 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 1.78 Total: 53.49 kcal Total: -71.43 4.23 -67.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263767555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.366 kcal (2) G-P(sol) polarization free energy of solvation -71.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds