Wall clock time and date at job start Tue Mar 31 2020 16:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47546 * 38.08317 * 3 2 1 5 5 C 1.46492 * 119.99851 * 270.00005 * 4 3 2 6 6 C 1.53006 * 109.47216 * 269.99824 * 5 4 3 7 7 C 1.52996 * 117.49864 * 243.62732 * 6 5 4 8 8 C 1.52996 * 117.50211 * 174.99814 * 6 5 4 9 9 C 1.34777 * 119.99716 * 89.99868 * 4 3 2 10 10 O 1.21591 * 119.99393 * 180.02562 * 9 4 3 11 11 N 1.34768 * 120.00297 * 359.97438 * 9 4 3 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 4 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47263 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47148 * 119.99951 * 22 20 18 25 25 H 1.48504 * 109.47096 * 239.99883 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 4.40640 * 5.51532 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47223 * 278.07714 * 3 2 1 30 30 H 1.09008 * 109.46802 * 158.08311 * 3 2 1 31 31 H 1.08997 * 109.47621 * 29.99267 * 5 4 3 32 32 H 1.08995 * 109.47505 * 150.00207 * 5 4 3 33 33 H 1.09001 * 115.54487 * 29.33158 * 6 5 4 34 34 H 1.08990 * 117.50098 * 359.97438 * 7 6 5 35 35 H 1.09010 * 117.49784 * 145.02031 * 7 6 5 36 36 H 1.08998 * 117.50212 * 214.97950 * 8 6 5 37 37 H 1.08998 * 117.49681 * 0.02562 * 8 6 5 38 38 H 0.97000 * 120.00448 * 0.02562 * 11 9 4 39 39 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 40 40 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 41 41 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 42 42 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 43 43 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.0863 -0.8519 5 6 3.3797 -2.4122 -0.2792 6 6 4.8248 -2.4947 0.2168 7 6 5.7488 -3.5063 -0.4642 8 6 5.2461 -3.7654 0.9576 9 6 3.3595 -0.8663 -2.1625 10 8 3.7648 -1.7685 -2.8696 11 7 3.1338 0.3534 -2.6894 12 6 3.3773 0.5924 -4.1142 13 6 3.0503 2.0255 -4.4463 14 6 1.7720 2.3660 -4.8498 15 6 1.4677 3.6792 -5.1493 16 6 2.4500 4.6566 -5.0565 17 8 2.1555 5.9474 -5.3564 18 6 3.1210 6.8625 -5.1364 19 1 4.1025 6.5456 -4.8162 20 6 2.8536 8.2104 -5.3210 21 7 1.6581 8.5965 -5.7114 22 14 4.1910 9.4783 -5.0154 23 1 5.4360 8.7912 -4.5875 24 1 4.4494 10.2365 -6.2659 25 1 3.7510 10.4151 -3.9505 26 6 3.7341 4.3107 -4.6565 27 6 4.0307 2.9965 -4.3529 28 1 -1.0498 -0.0003 -0.0004 29 1 3.0095 -0.1436 1.0175 30 1 3.0089 0.9543 -0.3836 31 1 2.6991 -2.5788 0.5557 32 1 3.2132 -3.1735 -1.0412 33 1 5.2639 -1.5523 0.5441 34 1 5.3271 -4.1134 -1.2652 35 1 6.7962 -3.2296 -0.5850 36 1 5.9627 -3.6591 1.7720 37 1 4.4938 -4.5428 1.0912 38 1 2.8100 1.0732 -2.1254 39 1 2.7474 -0.0711 -4.7067 40 1 4.4254 0.3972 -4.3413 41 1 1.0099 1.6045 -4.9267 42 1 0.4682 3.9452 -5.4601 43 1 1.4710 9.5395 -5.8402 44 1 4.5002 5.0684 -4.5837 45 1 5.0292 2.7268 -4.0421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319460142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:58 Heat of formation + Delta-G solvation = 57.738537 kcal Electronic energy + Delta-G solvation = -26485.359313 eV Core-core repulsion = 22664.602751 eV Total energy + Delta-G solvation = -3820.756562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.38432 -39.13211 -37.73343 -36.83510 -35.90959 -34.36641 -32.83336 -32.36945 -30.29900 -30.00852 -28.23637 -26.72569 -25.61669 -24.35651 -22.56380 -22.05344 -21.20870 -20.63228 -20.25677 -18.85709 -18.10004 -17.99380 -17.02036 -16.79409 -15.87725 -15.51110 -14.93341 -14.72928 -14.51331 -14.35258 -14.27825 -14.14891 -13.83885 -13.70350 -13.61605 -13.37467 -12.79793 -12.75400 -12.65261 -12.17555 -11.87347 -11.72481 -11.67025 -11.40053 -10.99302 -10.89433 -10.77767 -10.68937 -10.62757 -10.50314 -10.48461 -10.20660 -10.04203 -9.42855 -9.17915 -8.92448 -8.73552 -8.28543 -7.33422 -6.53799 -4.12582 1.96318 2.12987 2.26657 2.58609 3.00521 3.08290 3.08961 3.14414 3.19392 3.56719 3.89466 3.96259 4.16483 4.48819 4.53011 4.67944 4.72965 4.85886 5.01105 5.07195 5.13916 5.16749 5.21953 5.29325 5.38336 5.44861 5.49490 5.67149 5.69592 5.71292 5.82554 5.88086 5.92565 5.97649 6.11904 6.27510 6.35370 6.57638 6.61782 6.79232 6.81756 6.97030 7.15280 7.27780 7.34844 7.36537 7.71246 7.91072 7.93579 8.59201 8.91713 9.60128 10.63813 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.002258 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.818254 B =12397.714840 C =12610.791064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.218 4.218 3 C 0.220 3.780 4 N -0.626 5.626 5 C 0.165 3.835 6 C -0.171 4.171 7 C -0.168 4.168 8 C -0.179 4.179 9 C 0.706 3.294 10 O -0.587 6.587 11 N -0.736 5.736 12 C 0.197 3.803 13 C -0.214 4.214 14 C -0.053 4.053 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.217 0.783 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.397 0.603 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -18.351 13.562 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.219 4.219 3 C 0.097 3.903 4 N -0.362 5.362 5 C 0.042 3.958 6 C -0.190 4.190 7 C -0.205 4.205 8 C -0.217 4.217 9 C 0.408 3.592 10 O -0.465 6.465 11 N -0.392 5.392 12 C 0.074 3.926 13 C -0.215 4.215 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.234 0.766 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.054 -18.670 12.835 22.861 hybrid contribution 0.302 1.174 0.477 1.303 sum 3.356 -17.496 13.312 22.239 Atomic orbital electron populations 1.25014 0.96005 0.98825 0.99382 1.23596 0.95013 1.01780 1.01557 1.18323 0.83729 0.91429 0.96840 1.47110 1.69873 1.11789 1.07397 1.20871 0.93288 0.83681 0.97995 1.22759 0.96754 0.94724 1.04768 1.22979 0.99536 1.02634 0.95363 1.22951 1.03779 0.99198 0.95762 1.15938 0.78502 0.83477 0.81318 1.90901 1.52905 1.43451 1.59217 1.45665 1.71273 1.10781 1.11524 1.19841 1.00635 0.92997 0.79114 1.19227 0.95149 0.94024 1.13135 1.20533 0.95163 0.94837 0.96647 1.20214 0.98859 0.91783 1.10612 1.19438 0.92551 0.86167 0.91249 1.83980 1.40739 1.11522 1.71387 1.21401 0.92199 0.85590 1.47685 0.88874 1.25323 0.97764 0.97008 0.96423 1.70046 1.20132 1.16963 1.42220 0.85630 0.79488 0.79793 0.78425 1.19041 1.20069 1.20071 1.21157 0.97485 0.96749 1.10249 1.20647 0.97594 0.92225 0.96436 0.76571 0.87744 0.88309 0.90367 0.89536 0.87755 0.88418 0.89105 0.88859 0.88791 0.76776 0.91768 0.91702 0.87016 0.86405 0.91937 0.85419 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.22 -2.17 13.68 -37.12 -0.51 -2.68 16 3 C 0.22 1.87 5.65 -6.83 -0.04 1.83 16 4 N -0.63 -6.69 2.43 -182.78 -0.44 -7.14 16 5 C 0.16 1.54 5.69 -4.04 -0.02 1.52 16 6 C -0.17 -1.47 6.01 -90.62 -0.54 -2.01 16 7 C -0.17 -1.51 10.18 -26.73 -0.27 -1.78 16 8 C -0.18 -1.27 10.25 -26.73 -0.27 -1.54 16 9 C 0.71 9.88 8.27 -86.93 -0.72 9.16 16 10 O -0.59 -10.15 15.92 5.29 0.08 -10.07 16 11 N -0.74 -9.79 5.41 -66.41 -0.36 -10.15 16 12 C 0.20 2.85 5.80 -5.19 -0.03 2.82 16 13 C -0.21 -3.46 5.25 -104.57 -0.55 -4.01 16 14 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 15 C -0.20 -3.94 9.99 -39.40 -0.39 -4.34 16 16 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 18 C -0.39 -10.64 9.49 30.89 0.29 -10.34 16 19 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -24.60 13.67 55.48 0.76 -23.85 16 22 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.24 -4.89 9.17 -39.40 -0.36 -5.25 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 H 0.22 1.38 7.80 -54.10 -0.42 0.96 16 29 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 30 H 0.10 0.80 6.36 -51.92 -0.33 0.47 16 31 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.09 0.95 7.15 -51.93 -0.37 0.58 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.96 8.03 -51.93 -0.42 0.55 16 35 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 4.85 6.19 -40.82 -0.25 4.60 16 39 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 45 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -32.18 392.02 -9.19 -41.37 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.14 Total: 9.58 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.98 Total: -15.79 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.05 Total: -41.14 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.18 -9.19 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319460142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.110 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds