Wall clock time and date at job start Tue Mar 31 2020 16:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47546 * 38.08317 * 3 2 1 5 5 C 1.46492 * 119.99851 * 270.00005 * 4 3 2 6 6 C 1.53006 * 109.47216 * 269.99824 * 5 4 3 7 7 C 1.52996 * 117.49864 * 243.62732 * 6 5 4 8 8 C 1.52996 * 117.50211 * 174.99814 * 6 5 4 9 9 C 1.34777 * 119.99716 * 89.99868 * 4 3 2 10 10 O 1.21591 * 119.99393 * 180.02562 * 9 4 3 11 11 N 1.34768 * 120.00297 * 359.97438 * 9 4 3 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 4 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47263 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47148 * 119.99951 * 22 20 18 25 25 H 1.48504 * 109.47096 * 239.99883 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 4.40640 * 5.51532 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47223 * 278.07714 * 3 2 1 30 30 H 1.09008 * 109.46802 * 158.08311 * 3 2 1 31 31 H 1.08997 * 109.47621 * 29.99267 * 5 4 3 32 32 H 1.08995 * 109.47505 * 150.00207 * 5 4 3 33 33 H 1.09001 * 115.54487 * 29.33158 * 6 5 4 34 34 H 1.08990 * 117.50098 * 359.97438 * 7 6 5 35 35 H 1.09010 * 117.49784 * 145.02031 * 7 6 5 36 36 H 1.08998 * 117.50212 * 214.97950 * 8 6 5 37 37 H 1.08998 * 117.49681 * 0.02562 * 8 6 5 38 38 H 0.97000 * 120.00448 * 0.02562 * 11 9 4 39 39 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 40 40 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 41 41 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 42 42 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 43 43 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.0863 -0.8519 5 6 3.3797 -2.4122 -0.2792 6 6 4.8248 -2.4947 0.2168 7 6 5.7488 -3.5063 -0.4642 8 6 5.2461 -3.7654 0.9576 9 6 3.3595 -0.8663 -2.1625 10 8 3.7648 -1.7685 -2.8696 11 7 3.1338 0.3534 -2.6894 12 6 3.3773 0.5924 -4.1142 13 6 3.0503 2.0255 -4.4463 14 6 1.7720 2.3660 -4.8498 15 6 1.4677 3.6792 -5.1493 16 6 2.4500 4.6566 -5.0565 17 8 2.1555 5.9474 -5.3564 18 6 3.1210 6.8625 -5.1364 19 1 4.1025 6.5456 -4.8162 20 6 2.8536 8.2104 -5.3210 21 7 1.6581 8.5965 -5.7114 22 14 4.1910 9.4783 -5.0154 23 1 5.4360 8.7912 -4.5875 24 1 4.4494 10.2365 -6.2659 25 1 3.7510 10.4151 -3.9505 26 6 3.7341 4.3107 -4.6565 27 6 4.0307 2.9965 -4.3529 28 1 -1.0498 -0.0003 -0.0004 29 1 3.0095 -0.1436 1.0175 30 1 3.0089 0.9543 -0.3836 31 1 2.6991 -2.5788 0.5557 32 1 3.2132 -3.1735 -1.0412 33 1 5.2639 -1.5523 0.5441 34 1 5.3271 -4.1134 -1.2652 35 1 6.7962 -3.2296 -0.5850 36 1 5.9627 -3.6591 1.7720 37 1 4.4938 -4.5428 1.0912 38 1 2.8100 1.0732 -2.1254 39 1 2.7474 -0.0711 -4.7067 40 1 4.4254 0.3972 -4.3413 41 1 1.0099 1.6045 -4.9267 42 1 0.4682 3.9452 -5.4601 43 1 1.4710 9.5395 -5.8402 44 1 4.5002 5.0684 -4.5837 45 1 5.0292 2.7268 -4.0421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319460142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:57 Heat of formation + Delta-G solvation = 39.918793 kcal Electronic energy + Delta-G solvation = -26486.132036 eV Core-core repulsion = 22664.602751 eV Total energy + Delta-G solvation = -3821.529284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42657 -40.76131 -38.75637 -38.21177 -36.77337 -35.62218 -34.26524 -33.58989 -31.85296 -31.42686 -29.01903 -27.90922 -27.23374 -25.67333 -23.64951 -23.17818 -22.28750 -21.87942 -21.15818 -19.92925 -19.74290 -18.93765 -18.64978 -17.71668 -16.84236 -16.51352 -16.37131 -16.25217 -15.93991 -15.54609 -15.39097 -15.22033 -15.07621 -14.85979 -14.80041 -14.43130 -14.31570 -14.15009 -13.67547 -13.40680 -13.31737 -13.03307 -12.63146 -12.56792 -12.35861 -12.33525 -12.22700 -12.09046 -11.69211 -11.34101 -11.29524 -11.20119 -11.03062 -10.84784 -10.80459 -10.24987 -9.82298 -9.68223 -9.02458 -8.48327 -6.16419 0.51566 0.57287 1.35719 1.36419 1.44543 1.54186 1.87759 2.08555 2.16331 2.17610 2.76256 2.91220 3.07931 3.23877 3.47861 3.50277 3.83210 3.86430 4.01653 4.03129 4.11177 4.16925 4.22274 4.39826 4.46086 4.51032 4.54903 4.56675 4.73592 4.77654 4.80734 4.84450 5.03520 5.05931 5.07177 5.14551 5.26052 5.26551 5.29888 5.43425 5.49362 5.53802 5.68553 5.75219 5.88020 6.01535 6.15263 6.66458 6.91251 6.96635 7.52957 7.75779 8.74667 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.002258 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.818254 B =12397.714840 C =12610.791064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.241 4.241 3 C 0.217 3.783 4 N -0.619 5.619 5 C 0.165 3.835 6 C -0.174 4.174 7 C -0.188 4.188 8 C -0.157 4.157 9 C 0.703 3.297 10 O -0.623 6.623 11 N -0.732 5.732 12 C 0.203 3.797 13 C -0.182 4.182 14 C -0.043 4.043 15 C -0.204 4.204 16 C 0.124 3.876 17 O -0.229 6.229 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.250 1.250 24 H -0.270 1.270 25 H -0.269 1.269 26 C -0.242 4.242 27 C -0.044 4.044 28 H 0.238 0.762 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.143 0.857 42 H 0.115 0.885 43 H 0.273 0.727 44 H 0.122 0.878 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -20.270 15.765 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.243 4.243 3 C 0.095 3.905 4 N -0.354 5.354 5 C 0.042 3.958 6 C -0.194 4.194 7 C -0.225 4.225 8 C -0.194 4.194 9 C 0.405 3.595 10 O -0.504 6.504 11 N -0.388 5.388 12 C 0.080 3.920 13 C -0.183 4.183 14 C -0.062 4.062 15 C -0.223 4.223 16 C 0.073 3.927 17 O -0.135 6.135 18 C -0.488 4.488 19 H 0.122 0.878 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.838 3.162 23 H -0.173 1.173 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.261 4.261 27 C -0.062 4.062 28 H 0.255 0.745 29 H 0.151 0.849 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.240 0.760 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.161 0.839 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.349 -20.644 15.087 25.937 hybrid contribution -0.138 1.353 -0.125 1.366 sum 4.211 -19.291 14.962 24.774 Atomic orbital electron populations 1.25730 0.96973 0.98154 0.98849 1.23989 0.95738 1.02420 1.02132 1.18573 0.83202 0.90809 0.97902 1.47129 1.68908 1.12836 1.06478 1.20961 0.94442 0.82461 0.97943 1.22732 0.96010 0.95394 1.05222 1.22974 0.99571 1.03498 0.96494 1.23026 1.03527 0.98168 0.94682 1.16060 0.78278 0.82964 0.82205 1.90884 1.54572 1.44480 1.60488 1.45432 1.71361 1.11023 1.11008 1.19724 1.01072 0.91209 0.80004 1.19485 0.94311 0.94821 1.09715 1.20846 0.96344 0.93985 0.95024 1.20426 0.98457 0.92653 1.10786 1.19976 0.94437 0.85477 0.92852 1.83951 1.41809 1.13232 1.74468 1.21871 0.92767 0.86256 1.47912 0.87848 1.26588 1.00377 0.99034 0.96025 1.70186 1.22787 1.17473 1.45223 0.84531 0.76629 0.76618 0.78461 1.17343 1.19534 1.19359 1.21239 0.96378 0.98197 1.10321 1.20935 0.99332 0.90763 0.95178 0.74541 0.84893 0.87800 0.88102 0.91599 0.87427 0.89941 0.89219 0.87429 0.87761 0.75969 0.91460 0.91211 0.83914 0.86715 0.91814 0.86063 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 19.25 74.32 1.43 -1.50 16 2 C -0.24 -4.19 13.68 31.12 0.43 -3.77 16 3 C 0.22 3.06 5.65 84.57 0.48 3.54 16 4 N -0.62 -11.77 2.43 -850.46 -2.07 -13.84 16 5 C 0.16 2.74 5.69 86.38 0.49 3.23 16 6 C -0.17 -2.62 6.01 -10.79 -0.06 -2.68 16 7 C -0.19 -3.18 10.18 30.60 0.31 -2.87 16 8 C -0.16 -1.81 10.25 30.60 0.31 -1.49 16 9 C 0.70 18.20 8.27 179.06 1.48 19.68 16 10 O -0.62 -20.74 15.92 -4.00 -0.06 -20.81 16 11 N -0.73 -17.37 5.41 -482.29 -2.61 -19.99 16 12 C 0.20 5.23 5.80 85.63 0.50 5.73 16 13 C -0.18 -5.36 5.25 -19.83 -0.10 -5.46 16 14 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 15 C -0.20 -8.25 9.99 22.39 0.22 -8.03 16 16 C 0.12 5.88 6.65 22.58 0.15 6.03 16 17 O -0.23 -13.33 9.76 -22.74 -0.22 -13.55 16 18 C -0.41 -23.26 9.49 67.92 0.64 -22.62 16 19 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 20 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 21 N -0.92 -55.31 13.67 21.61 0.30 -55.02 16 22 Si 1.02 41.75 29.55 68.60 2.03 43.78 16 23 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 26 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16 27 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 28 H 0.24 2.44 7.80 -4.43 -0.03 2.41 16 29 H 0.13 1.12 8.07 -2.39 -0.02 1.11 16 30 H 0.10 1.36 6.36 -2.38 -0.02 1.35 16 31 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 32 H 0.07 1.39 7.15 -2.39 -0.02 1.38 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.63 8.03 -2.39 -0.02 1.61 16 35 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.40 8.62 6.19 -92.71 -0.57 8.05 16 39 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 40 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 43 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 45 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -74.15 392.02 5.17 -68.98 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.43 Total: 33.50 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 7.38 Total: -23.05 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -4.38 Total: -88.84 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.29 Total: -34.36 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -74.15 5.17 -68.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319460142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.896 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds