Wall clock time and date at job start Tue Mar 31 2020 16:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46854 * 2 1 4 4 H 1.09004 * 109.46894 * 304.99585 * 3 2 1 5 5 C 1.53003 * 109.46815 * 184.99802 * 3 2 1 6 6 S 1.81403 * 109.46924 * 179.97438 * 5 3 2 7 7 C 1.81397 * 102.99640 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47333 * 64.99964 * 3 2 1 9 9 C 1.34779 * 120.00027 * 274.99966 * 8 3 2 10 10 O 1.21352 * 119.99891 * 359.97438 * 9 8 3 11 11 C 1.49452 * 120.00177 * 180.02562 * 9 8 3 12 12 O 1.21347 * 119.99776 * 353.06667 * 11 9 8 13 13 N 1.34775 * 119.99837 * 173.07144 * 11 9 8 14 14 C 1.46925 * 120.63321 * 1.66499 * 13 11 9 15 15 C 1.52765 * 109.01159 * 233.58788 * 14 13 11 16 16 C 1.53035 * 109.38152 * 305.59163 * 15 14 13 17 17 C 1.50696 * 109.44785 * 181.25168 * 16 15 14 18 18 H 1.08002 * 120.00311 * 239.93179 * 17 16 15 19 19 C 1.37883 * 120.00155 * 59.93845 * 17 16 15 20 20 N 1.31519 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00376 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47193 * 59.99872 * 21 19 17 23 23 H 1.48498 * 109.47201 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47245 * 300.00295 * 21 19 17 25 25 C 1.53038 * 109.54183 * 61.23945 * 16 15 14 26 26 C 1.46927 * 120.62700 * 181.95309 * 13 11 9 27 27 H 1.09000 * 109.47252 * 60.00376 * 1 2 3 28 28 H 1.09002 * 109.47205 * 300.00020 * 1 2 3 29 29 H 1.09004 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46534 * 119.99420 * 2 1 3 31 31 H 1.08999 * 109.46945 * 239.99260 * 2 1 3 32 32 H 1.09002 * 109.46771 * 299.99882 * 5 3 2 33 33 H 1.08998 * 109.46842 * 59.99779 * 5 3 2 34 34 H 1.09006 * 109.46914 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47321 * 300.00280 * 7 6 5 36 36 H 1.09003 * 109.46956 * 60.00343 * 7 6 5 37 37 H 0.96999 * 120.00445 * 94.99826 * 8 3 2 38 38 H 1.09000 * 109.58707 * 353.42076 * 14 13 11 39 39 H 1.09000 * 109.58752 * 113.84781 * 14 13 11 40 40 H 1.08996 * 109.56534 * 185.55220 * 15 14 13 41 41 H 1.09004 * 109.35574 * 65.49742 * 15 14 13 42 42 H 1.09001 * 109.46039 * 301.21805 * 16 15 14 43 43 H 0.96992 * 120.00139 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.49950 * 178.68687 * 25 16 15 45 45 H 1.08999 * 109.52766 * 58.60093 * 25 16 15 46 46 H 1.09001 * 109.58371 * 246.14874 * 26 13 11 47 47 H 1.08998 * 109.59109 * 6.43640 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 16 4.1694 3.1547 -0.1264 7 6 5.9655 2.9524 -0.2796 8 7 1.6524 2.0975 1.2517 9 6 0.4351 2.6644 1.3669 10 8 -0.3398 2.6327 0.4335 11 6 0.0399 3.3331 2.6437 12 8 0.7611 3.2577 3.6166 13 7 -1.1177 4.0198 2.7145 14 6 -2.0188 4.0896 1.5561 15 6 -2.3224 5.5550 1.2493 16 6 -2.8630 6.2361 2.5086 17 6 -3.1919 7.6739 2.1995 18 1 -2.6969 8.4688 2.7376 19 6 -4.1249 7.9746 1.2299 20 7 -4.7274 7.0066 0.5744 21 14 -4.5331 9.7568 0.8472 22 1 -3.3058 10.4595 0.3943 23 1 -5.5581 9.8104 -0.2260 24 1 -5.0594 10.4174 2.0686 25 6 -1.8061 6.1812 3.6141 26 6 -1.4994 4.7182 3.9495 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 3.9994 0.9053 0.7162 33 1 3.8532 0.9570 -1.0570 34 1 6.4419 3.9328 -0.2911 35 1 6.3397 2.3761 0.5666 36 1 6.1942 2.4268 -1.2067 37 1 2.2718 2.1233 1.9977 38 1 -1.5399 3.6285 0.6923 39 1 -2.9478 3.5668 1.7839 40 1 -3.0666 5.6151 0.4552 41 1 -1.4076 6.0542 0.9299 42 1 -3.7640 5.7210 2.8417 43 1 -5.3835 7.2181 -0.1080 44 1 -2.1829 6.6869 4.5031 45 1 -0.8961 6.6747 3.2730 46 1 -2.3851 4.2477 4.3765 47 1 -0.6788 4.6696 4.6654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323592700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:45 Heat of formation + Delta-G solvation = -64.391793 kcal Electronic energy + Delta-G solvation = -26932.767627 eV Core-core repulsion = 23242.159048 eV Total energy + Delta-G solvation = -3690.608579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78837 -38.80081 -37.00332 -36.45996 -33.47862 -32.43923 -31.16889 -30.42621 -30.00189 -29.18152 -26.61911 -24.90726 -23.90111 -22.46085 -22.21084 -20.92569 -20.31306 -18.83709 -17.27972 -17.05829 -16.49024 -16.43205 -16.02638 -15.67020 -14.97236 -14.58127 -14.49787 -14.30422 -14.16600 -13.98049 -13.75483 -13.32696 -13.30036 -13.05537 -12.92709 -12.82610 -12.67401 -12.25464 -12.14749 -11.69432 -11.62224 -11.34450 -11.31857 -11.01362 -10.89478 -10.76574 -10.56093 -10.30712 -10.28452 -10.01582 -9.64324 -9.28500 -9.17373 -9.11872 -8.44165 -8.24988 -8.02613 -7.96429 -5.96100 -4.02530 1.28624 1.69050 2.24379 2.54026 3.34093 3.38761 3.41530 3.49201 3.79825 4.17214 4.46075 4.54920 4.62614 4.74951 4.77882 4.82106 4.93269 5.07250 5.21164 5.33468 5.35723 5.48335 5.63870 5.69741 5.80544 5.87563 5.92579 6.00079 6.11814 6.17802 6.30962 6.32845 6.52599 6.67546 6.80554 6.87434 7.04025 7.17829 7.23064 7.37411 7.71870 7.85735 7.97395 8.02820 8.13959 8.32564 8.47216 9.00378 9.61950 11.09241 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.003081 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.816360 B = 9086.012803 C = 9486.813683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.159 3.841 4 H 0.104 0.896 5 C -0.101 4.101 6 S -0.241 6.241 7 C -0.127 4.127 8 N -0.695 5.695 9 C 0.516 3.484 10 O -0.497 6.497 11 C 0.499 3.501 12 O -0.546 6.546 13 N -0.558 5.558 14 C 0.044 3.956 15 C -0.120 4.120 16 C 0.046 3.954 17 C -0.513 4.513 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.122 4.122 26 C 0.106 3.894 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.143 0.857 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.290 -15.342 -2.084 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.054 3.946 4 H 0.122 0.878 5 C -0.250 4.250 6 S -0.015 6.015 7 C -0.296 4.296 8 N -0.349 5.349 9 C 0.298 3.702 10 O -0.373 6.373 11 C 0.281 3.719 12 O -0.426 6.426 13 N -0.290 5.290 14 C -0.076 4.076 15 C -0.159 4.159 16 C 0.028 3.972 17 C -0.551 4.551 18 H 0.072 0.928 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.160 4.160 26 C -0.015 4.015 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.159 0.841 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.395 -14.464 -2.322 21.986 hybrid contribution 0.732 0.002 0.034 0.733 sum 17.127 -14.462 -2.288 22.532 Atomic orbital electron populations 1.21826 0.94074 1.01068 1.03551 1.21957 0.97742 0.94622 1.02515 1.20853 0.91027 0.94435 0.88298 0.87829 1.23810 0.98354 0.96820 1.05990 1.87521 1.05543 1.11140 1.97285 1.23415 0.94983 1.06544 1.04659 1.45789 1.16267 1.56085 1.16722 1.20326 0.82253 0.78897 0.88699 1.90384 1.49390 1.56843 1.40702 1.19835 0.82657 0.81295 0.88124 1.90691 1.52301 1.62075 1.37511 1.48242 1.18681 1.46380 1.15651 1.23449 0.93319 1.01564 0.89231 1.21894 1.00680 0.90568 1.02730 1.18673 0.92332 0.96050 0.90163 1.21160 1.22206 0.91893 1.19879 0.92833 1.24960 0.95930 0.97009 0.96053 1.69838 1.27205 1.31184 1.24665 0.86684 0.78048 0.85499 0.77905 1.20356 1.21324 1.20369 1.22010 1.00822 0.92368 1.00834 1.21880 1.00047 0.94168 0.85437 0.91600 0.92346 0.93176 0.91516 0.90744 0.89337 0.88335 0.87966 0.90502 0.90573 0.75055 0.84083 0.92400 0.87746 0.94612 0.95526 0.92944 0.91959 0.92895 0.91622 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.51 37.16 0.32 -1.25 16 2 C -0.13 -1.04 5.61 -26.73 -0.15 -1.19 16 3 C 0.16 1.50 2.31 -67.93 -0.16 1.35 16 4 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 5 C -0.10 -0.73 5.50 37.16 0.20 -0.52 16 6 S -0.24 -2.38 21.96 -107.50 -2.36 -4.74 16 7 C -0.13 -0.81 10.76 101.05 1.09 0.28 16 8 N -0.69 -8.24 4.56 -54.23 -0.25 -8.48 16 9 C 0.52 7.95 6.37 -11.58 -0.07 7.87 16 10 O -0.50 -8.29 10.16 5.50 0.06 -8.24 16 11 C 0.50 8.92 7.76 -11.58 -0.09 8.83 16 12 O -0.55 -10.26 15.91 5.50 0.09 -10.18 16 13 N -0.56 -10.64 2.98 -173.53 -0.52 -11.16 16 14 C 0.04 0.89 6.20 -3.93 -0.02 0.87 16 15 C -0.12 -2.85 5.14 -26.83 -0.14 -2.99 16 16 C 0.05 1.14 2.07 -91.74 -0.19 0.95 16 17 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -25.18 11.30 55.43 0.63 -24.56 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 26 C 0.11 1.99 6.43 -3.71 -0.02 1.96 16 27 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 28 H 0.06 0.75 5.65 -51.93 -0.29 0.46 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.41 4.64 8.09 -40.82 -0.33 4.31 16 38 H 0.14 2.79 3.78 -56.98 -0.22 2.57 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 2.75 6.03 -51.93 -0.31 2.44 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -30.22 379.58 -9.20 -39.42 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.78 Total: 5.16 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.23 Total: 0.71 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.14 Total: -44.20 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.14 Total: -18.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.36 Total: -4.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.22 -9.20 -39.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323592700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.970 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds