Wall clock time and date at job start Tue Mar 31 2020 16:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46854 * 2 1 4 4 H 1.09004 * 109.46894 * 304.99585 * 3 2 1 5 5 C 1.53003 * 109.46815 * 184.99802 * 3 2 1 6 6 S 1.81403 * 109.46924 * 179.97438 * 5 3 2 7 7 C 1.81397 * 102.99640 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47333 * 64.99964 * 3 2 1 9 9 C 1.34779 * 120.00027 * 274.99966 * 8 3 2 10 10 O 1.21352 * 119.99891 * 359.97438 * 9 8 3 11 11 C 1.49452 * 120.00177 * 180.02562 * 9 8 3 12 12 O 1.21347 * 119.99776 * 353.06667 * 11 9 8 13 13 N 1.34775 * 119.99837 * 173.07144 * 11 9 8 14 14 C 1.46925 * 120.63321 * 1.66499 * 13 11 9 15 15 C 1.52765 * 109.01159 * 233.58788 * 14 13 11 16 16 C 1.53035 * 109.38152 * 305.59163 * 15 14 13 17 17 C 1.50696 * 109.44785 * 181.25168 * 16 15 14 18 18 H 1.08002 * 120.00311 * 239.93179 * 17 16 15 19 19 C 1.37883 * 120.00155 * 59.93845 * 17 16 15 20 20 N 1.31519 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00376 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47193 * 59.99872 * 21 19 17 23 23 H 1.48498 * 109.47201 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47245 * 300.00295 * 21 19 17 25 25 C 1.53038 * 109.54183 * 61.23945 * 16 15 14 26 26 C 1.46927 * 120.62700 * 181.95309 * 13 11 9 27 27 H 1.09000 * 109.47252 * 60.00376 * 1 2 3 28 28 H 1.09002 * 109.47205 * 300.00020 * 1 2 3 29 29 H 1.09004 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46534 * 119.99420 * 2 1 3 31 31 H 1.08999 * 109.46945 * 239.99260 * 2 1 3 32 32 H 1.09002 * 109.46771 * 299.99882 * 5 3 2 33 33 H 1.08998 * 109.46842 * 59.99779 * 5 3 2 34 34 H 1.09006 * 109.46914 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47321 * 300.00280 * 7 6 5 36 36 H 1.09003 * 109.46956 * 60.00343 * 7 6 5 37 37 H 0.96999 * 120.00445 * 94.99826 * 8 3 2 38 38 H 1.09000 * 109.58707 * 353.42076 * 14 13 11 39 39 H 1.09000 * 109.58752 * 113.84781 * 14 13 11 40 40 H 1.08996 * 109.56534 * 185.55220 * 15 14 13 41 41 H 1.09004 * 109.35574 * 65.49742 * 15 14 13 42 42 H 1.09001 * 109.46039 * 301.21805 * 16 15 14 43 43 H 0.96992 * 120.00139 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.49950 * 178.68687 * 25 16 15 45 45 H 1.08999 * 109.52766 * 58.60093 * 25 16 15 46 46 H 1.09001 * 109.58371 * 246.14874 * 26 13 11 47 47 H 1.08998 * 109.59109 * 6.43640 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 16 4.1694 3.1547 -0.1264 7 6 5.9655 2.9524 -0.2796 8 7 1.6524 2.0975 1.2517 9 6 0.4351 2.6644 1.3669 10 8 -0.3398 2.6327 0.4335 11 6 0.0399 3.3331 2.6437 12 8 0.7611 3.2577 3.6166 13 7 -1.1177 4.0198 2.7145 14 6 -2.0188 4.0896 1.5561 15 6 -2.3224 5.5550 1.2493 16 6 -2.8630 6.2361 2.5086 17 6 -3.1919 7.6739 2.1995 18 1 -2.6969 8.4688 2.7376 19 6 -4.1249 7.9746 1.2299 20 7 -4.7274 7.0066 0.5744 21 14 -4.5331 9.7568 0.8472 22 1 -3.3058 10.4595 0.3943 23 1 -5.5581 9.8104 -0.2260 24 1 -5.0594 10.4174 2.0686 25 6 -1.8061 6.1812 3.6141 26 6 -1.4994 4.7182 3.9495 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 3.9994 0.9053 0.7162 33 1 3.8532 0.9570 -1.0570 34 1 6.4419 3.9328 -0.2911 35 1 6.3397 2.3761 0.5666 36 1 6.1942 2.4268 -1.2067 37 1 2.2718 2.1233 1.9977 38 1 -1.5399 3.6285 0.6923 39 1 -2.9478 3.5668 1.7839 40 1 -3.0666 5.6151 0.4552 41 1 -1.4076 6.0542 0.9299 42 1 -3.7640 5.7210 2.8417 43 1 -5.3835 7.2181 -0.1080 44 1 -2.1829 6.6869 4.5031 45 1 -0.8961 6.6747 3.2730 46 1 -2.3851 4.2477 4.3765 47 1 -0.6788 4.6696 4.6654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323592700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:43 Heat of formation + Delta-G solvation = -82.714295 kcal Electronic energy + Delta-G solvation = -26933.562151 eV Core-core repulsion = 23242.159048 eV Total energy + Delta-G solvation = -3691.403103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09294 -40.13098 -38.58318 -37.54729 -35.33476 -33.43102 -33.00526 -31.75345 -31.14723 -29.69701 -28.38655 -26.35078 -24.86858 -24.15917 -23.74279 -21.89769 -21.68867 -20.46605 -18.72059 -18.37000 -18.15781 -17.45555 -17.28880 -16.88757 -16.51118 -16.15011 -15.77515 -15.34089 -14.96738 -14.90072 -14.77487 -14.64621 -14.64147 -14.43318 -14.24765 -13.88938 -13.78125 -13.63034 -13.36079 -13.18432 -12.91788 -12.79882 -12.54998 -12.44208 -12.23209 -12.13324 -12.03598 -11.92083 -11.76580 -11.48806 -11.05631 -11.00524 -10.91476 -10.44824 -10.28584 -9.85318 -9.68064 -8.70075 -8.06942 -6.21128 0.36178 0.68627 1.31823 1.42073 1.43174 1.50690 1.67955 2.15344 2.44176 2.50045 3.19140 3.28241 3.49464 3.97404 4.03623 4.11568 4.27040 4.30971 4.32116 4.36741 4.37194 4.46952 4.50802 4.52053 4.57203 4.74056 4.79638 4.84213 4.91175 4.92989 4.94839 5.09693 5.13533 5.18565 5.20527 5.38846 5.40247 5.48773 5.57008 5.62898 5.96547 6.03868 6.11490 6.31406 6.38734 6.73027 6.88662 6.97394 7.46387 8.96504 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.003081 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.816360 B = 9086.012803 C = 9486.813683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.156 3.844 4 H 0.083 0.917 5 C -0.078 4.078 6 S -0.329 6.329 7 C -0.107 4.107 8 N -0.676 5.676 9 C 0.516 3.484 10 O -0.514 6.514 11 C 0.498 3.502 12 O -0.553 6.553 13 N -0.568 5.568 14 C 0.060 3.940 15 C -0.109 4.109 16 C 0.044 3.956 17 C -0.536 4.536 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.271 1.271 25 C -0.113 4.113 26 C 0.111 3.889 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.418 0.582 38 H 0.151 0.849 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.019 0.981 42 H 0.003 0.997 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.387 -16.812 -2.088 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.052 3.948 4 H 0.101 0.899 5 C -0.226 4.226 6 S -0.104 6.104 7 C -0.276 4.276 8 N -0.329 5.329 9 C 0.298 3.702 10 O -0.392 6.392 11 C 0.281 3.719 12 O -0.433 6.433 13 N -0.299 5.299 14 C -0.060 4.060 15 C -0.148 4.148 16 C 0.025 3.975 17 C -0.574 4.574 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.553 5.553 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.151 4.151 26 C -0.011 4.011 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.255 0.745 38 H 0.167 0.833 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.038 0.962 42 H 0.021 0.979 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.540 -15.955 -2.312 24.569 hybrid contribution 0.152 0.423 0.037 0.451 sum 18.691 -15.532 -2.276 24.409 Atomic orbital electron populations 1.21797 0.96119 1.01223 1.01430 1.21929 0.95738 0.93642 1.04645 1.21051 0.92799 0.94817 0.86141 0.89886 1.23758 0.96030 0.94572 1.08258 1.87843 1.10027 1.14929 1.97577 1.23407 0.91045 1.07042 1.06066 1.45773 1.14719 1.54603 1.17791 1.19904 0.83385 0.79392 0.87532 1.90348 1.50181 1.57942 1.40759 1.20277 0.81839 0.80773 0.89026 1.90675 1.52201 1.62267 1.38131 1.48220 1.19186 1.47221 1.15290 1.23216 0.93724 0.98817 0.90266 1.21662 0.98804 0.92905 1.01448 1.18637 0.92515 0.94641 0.91686 1.21530 1.22541 0.93192 1.20178 0.93182 1.25707 0.95884 1.00919 0.95938 1.69972 1.27462 1.32923 1.24908 0.85712 0.77830 0.80820 0.77874 1.20049 1.20852 1.19636 1.21852 0.99056 0.94358 0.99821 1.21830 1.01070 0.92524 0.85642 0.93264 0.94943 0.91855 0.89986 0.87877 0.87172 0.85766 0.88001 0.89111 0.89000 0.74462 0.83294 0.92589 0.90626 0.96171 0.97925 0.92964 0.90993 0.93855 0.90477 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.51 71.98 0.61 -2.35 16 2 C -0.12 -1.59 5.61 30.60 0.17 -1.42 16 3 C 0.16 2.65 2.31 44.99 0.10 2.76 16 4 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 5 C -0.08 -0.89 5.50 71.98 0.40 -0.49 16 6 S -0.33 -6.07 21.96 -56.49 -1.24 -7.31 16 7 C -0.11 -1.10 10.76 113.37 1.22 0.12 16 8 N -0.68 -15.21 4.56 -443.86 -2.02 -17.23 16 9 C 0.52 15.78 6.37 87.27 0.56 16.33 16 10 O -0.51 -17.37 10.16 -3.25 -0.03 -17.40 16 11 C 0.50 17.59 7.76 87.27 0.68 18.27 16 12 O -0.55 -20.19 15.91 -3.24 -0.05 -20.24 16 13 N -0.57 -21.68 2.98 -821.29 -2.45 -24.13 16 14 C 0.06 2.49 6.20 86.22 0.53 3.02 16 15 C -0.11 -5.39 5.14 30.53 0.16 -5.24 16 16 C 0.04 2.22 2.07 -11.52 -0.02 2.20 16 17 C -0.54 -30.05 8.56 25.60 0.22 -29.84 16 18 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 19 C 0.01 0.80 5.30 84.66 0.45 1.25 16 20 N -0.91 -52.99 11.30 21.45 0.24 -52.74 16 21 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 C -0.11 -4.78 5.30 30.67 0.16 -4.62 16 26 C 0.11 4.10 6.43 86.36 0.56 4.65 16 27 H 0.05 1.13 7.85 -2.39 -0.02 1.11 16 28 H 0.03 0.81 5.65 -2.39 -0.01 0.80 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.42 8.69 8.09 -92.71 -0.75 7.94 16 38 H 0.15 6.05 3.78 -82.35 -0.31 5.74 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.08 4.17 6.03 -2.39 -0.01 4.16 16 41 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.09 3.21 7.01 -2.39 -0.02 3.20 16 Total: -1.00 -67.17 379.58 2.18 -64.99 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.09 Total: 23.11 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.79 Total: 4.66 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -4.23 Total: -94.11 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.08 Total: -37.64 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -1.24 Total: -7.31 kcal Total: -67.17 2.18 -64.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323592700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.726 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds