Wall clock time and date at job start Tue Mar 31 2020 16:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 H 1.09003 * 109.47361 * 54.99796 * 3 2 1 5 5 C 1.53004 * 109.47415 * 174.99676 * 3 2 1 6 6 S 1.81391 * 109.47444 * 184.99736 * 5 3 2 7 7 C 1.81398 * 103.00235 * 179.97438 * 6 5 3 8 8 N 1.46498 * 109.47277 * 294.99769 * 3 2 1 9 9 C 1.34780 * 120.00035 * 85.00047 * 8 3 2 10 10 O 1.21344 * 120.00036 * 359.97438 * 9 8 3 11 11 C 1.49450 * 119.99956 * 180.02562 * 9 8 3 12 12 O 1.21345 * 120.00218 * 6.76879 * 11 9 8 13 13 N 1.34781 * 120.00016 * 186.76048 * 11 9 8 14 14 C 1.46924 * 120.63105 * 188.38835 * 13 11 9 15 15 C 1.52765 * 109.00859 * 233.58823 * 14 13 11 16 16 C 1.53043 * 109.38009 * 305.59035 * 15 14 13 17 17 C 1.50701 * 109.44651 * 181.25497 * 16 15 14 18 18 H 1.07999 * 119.99950 * 239.94432 * 17 16 15 19 19 C 1.37875 * 120.00061 * 59.93625 * 17 16 15 20 20 N 1.31513 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99924 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47094 * 60.00191 * 21 19 17 23 23 H 1.48498 * 109.46833 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47068 * 299.99813 * 21 19 17 25 25 C 1.53036 * 109.53805 * 61.24157 * 16 15 14 26 26 C 1.46933 * 120.62807 * 8.67419 * 13 11 9 27 27 H 1.08999 * 109.47449 * 300.00137 * 1 2 3 28 28 H 1.09000 * 109.46926 * 60.00553 * 1 2 3 29 29 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47449 * 239.99863 * 2 1 3 31 31 H 1.09000 * 109.46926 * 119.99447 * 2 1 3 32 32 H 1.09008 * 109.46750 * 65.00008 * 5 3 2 33 33 H 1.09003 * 109.46810 * 305.00585 * 5 3 2 34 34 H 1.08996 * 109.47296 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47131 * 300.00497 * 7 6 5 36 36 H 1.09002 * 109.46719 * 60.00032 * 7 6 5 37 37 H 0.97000 * 120.00566 * 265.00446 * 8 3 2 38 38 H 1.08996 * 109.58590 * 353.42299 * 14 13 11 39 39 H 1.08998 * 109.58670 * 113.84872 * 14 13 11 40 40 H 1.08988 * 109.56361 * 185.55274 * 15 14 13 41 41 H 1.08998 * 109.35636 * 65.49843 * 15 14 13 42 42 H 1.08996 * 109.46168 * 301.21491 * 16 15 14 43 43 H 0.96998 * 120.00099 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.49500 * 178.68296 * 25 16 15 45 45 H 1.08998 * 109.52777 * 58.60469 * 25 16 15 46 46 H 1.08994 * 109.58298 * 246.15249 * 26 13 11 47 47 H 1.08998 * 109.58452 * 6.43395 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1258 6 16 4.1571 3.1525 0.2744 7 6 5.9546 2.9506 0.4116 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3670 10 8 -0.3401 2.6319 -0.4340 11 6 0.0396 3.3321 -2.6442 12 8 0.7619 3.2583 -3.6165 13 7 -1.1196 4.0160 -2.7163 14 6 -1.6118 4.5211 -4.0052 15 6 -1.8888 6.0182 -3.8798 16 6 -2.8382 6.2624 -2.7045 17 6 -3.1369 7.7357 -2.5986 18 1 -2.8844 8.2744 -1.6973 19 6 -3.7324 8.3959 -3.6524 20 7 -4.0402 7.7399 -4.7498 21 14 -4.1020 10.2223 -3.5212 22 1 -2.8376 10.9685 -3.2990 23 1 -4.7377 10.6902 -4.7791 24 1 -5.0241 10.4602 -2.3818 25 6 -2.1826 5.7806 -1.4084 26 6 -1.9118 4.2760 -1.5064 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 4.0030 0.9837 -0.7596 33 1 3.8570 0.8801 1.0114 34 1 6.4240 3.9297 0.5070 35 1 6.1866 2.3488 1.2902 36 1 6.3333 2.4520 -0.4807 37 1 2.2719 2.1232 -1.9978 38 1 -0.8587 4.3535 -4.7750 39 1 -2.5327 4.0031 -4.2730 40 1 -2.3467 6.3829 -4.7992 41 1 -0.9511 6.5458 -3.7057 42 1 -3.7663 5.7146 -2.8675 43 1 -4.4588 8.2045 -5.4913 44 1 -2.8496 5.9761 -0.5688 45 1 -1.2422 6.3104 -1.2569 46 1 -2.8576 3.7376 -1.5664 47 1 -1.3575 3.9443 -0.6285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323592701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:51 Heat of formation + Delta-G solvation = -69.147842 kcal Electronic energy + Delta-G solvation = -26799.443057 eV Core-core repulsion = 23108.628239 eV Total energy + Delta-G solvation = -3690.814817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79247 -38.81753 -37.00016 -36.48687 -33.51054 -32.46732 -31.05087 -30.45885 -30.18988 -29.20898 -26.57397 -24.92659 -23.91392 -22.65078 -22.10548 -20.96045 -20.28158 -18.85308 -17.28999 -17.08477 -16.53930 -16.49249 -16.04861 -15.66536 -14.93565 -14.59720 -14.51992 -14.31214 -14.20090 -13.97115 -13.77631 -13.32409 -13.28383 -13.14004 -13.05179 -12.71379 -12.67517 -12.28468 -12.15784 -11.81694 -11.64008 -11.36406 -11.16231 -11.06117 -10.93802 -10.86925 -10.59671 -10.33787 -10.31365 -10.04552 -9.53147 -9.47206 -9.32402 -8.91049 -8.59243 -8.32837 -8.04237 -7.99452 -5.98047 -4.04331 1.26122 1.66074 2.21391 2.52673 3.33415 3.37968 3.40855 3.45564 3.76771 4.13453 4.44962 4.52262 4.59508 4.70734 4.75700 4.79770 4.89292 5.03940 5.17316 5.31408 5.33677 5.44204 5.59442 5.71638 5.77450 5.89607 5.94556 6.01097 6.08852 6.20673 6.27248 6.36206 6.43018 6.60862 6.73330 6.82957 7.03918 7.10525 7.22206 7.35909 7.71203 7.77964 7.92135 7.98231 8.10477 8.30405 8.45567 8.98900 9.60469 11.07409 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.002879 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.949756 B = 9724.450793 C =10431.686274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.160 3.840 4 H 0.103 0.897 5 C -0.101 4.101 6 S -0.243 6.243 7 C -0.126 4.126 8 N -0.696 5.696 9 C 0.515 3.485 10 O -0.505 6.505 11 C 0.499 3.501 12 O -0.540 6.540 13 N -0.562 5.562 14 C 0.105 3.895 15 C -0.122 4.122 16 C 0.047 3.953 17 C -0.512 4.512 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.124 4.124 26 C 0.070 3.930 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.039 0.961 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.976 -16.563 9.594 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.121 0.879 5 C -0.249 4.249 6 S -0.017 6.017 7 C -0.295 4.295 8 N -0.349 5.349 9 C 0.297 3.703 10 O -0.381 6.381 11 C 0.280 3.720 12 O -0.419 6.419 13 N -0.294 5.294 14 C -0.016 4.016 15 C -0.161 4.161 16 C 0.028 3.972 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.162 4.162 26 C -0.052 4.052 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.249 0.751 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.133 -15.627 9.577 23.769 hybrid contribution 0.820 -0.001 -0.399 0.912 sum 15.953 -15.629 9.178 24.145 Atomic orbital electron populations 1.21816 0.94118 1.01039 1.03470 1.21959 0.97713 0.94648 1.02552 1.20838 0.91055 0.94398 0.88252 0.87892 1.23801 0.98395 0.96841 1.05903 1.87471 1.05802 1.11488 1.96949 1.23409 0.94837 1.06550 1.04722 1.45799 1.16306 1.56172 1.16672 1.20357 0.82211 0.79078 0.88654 1.90525 1.50129 1.56940 1.40535 1.19873 0.82683 0.81217 0.88192 1.90704 1.51174 1.61967 1.38035 1.48191 1.20296 1.49899 1.10975 1.21980 0.98442 0.98032 0.83136 1.21944 0.99458 0.89969 1.04713 1.18662 0.93561 0.95942 0.88992 1.21173 1.39077 0.94052 1.00700 0.92749 1.24966 0.95520 0.98071 0.95435 1.69827 1.42400 1.35894 1.04981 0.86675 0.78536 0.85647 0.77240 1.20345 1.21339 1.20320 1.22016 1.00554 0.92654 1.00963 1.22912 0.96257 0.98208 0.87777 0.91709 0.92330 0.93192 0.91473 0.90755 0.89304 0.88328 0.87949 0.90563 0.90463 0.75066 0.90421 0.91695 0.87629 0.94236 0.95456 0.92932 0.91993 0.93125 0.92025 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.51 37.16 0.32 -1.16 16 2 C -0.13 -0.99 5.61 -26.73 -0.15 -1.14 16 3 C 0.16 1.44 2.25 -67.93 -0.15 1.28 16 4 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 5 C -0.10 -0.69 5.46 37.16 0.20 -0.49 16 6 S -0.24 -2.31 22.11 -107.50 -2.38 -4.68 16 7 C -0.13 -0.77 10.76 101.05 1.09 0.32 16 8 N -0.70 -7.98 4.73 -54.24 -0.26 -8.24 16 9 C 0.51 7.63 6.31 -11.58 -0.07 7.56 16 10 O -0.51 -7.88 10.32 5.50 0.06 -7.82 16 11 C 0.50 8.88 7.73 -11.58 -0.09 8.79 16 12 O -0.54 -10.41 15.93 5.50 0.09 -10.32 16 13 N -0.56 -10.66 2.98 -173.54 -0.52 -11.18 16 14 C 0.11 2.13 6.42 -3.93 -0.03 2.10 16 15 C -0.12 -2.88 5.14 -26.83 -0.14 -3.02 16 16 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 17 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -25.11 11.31 55.43 0.63 -24.48 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.12 -2.59 5.30 -26.62 -0.14 -2.73 16 26 C 0.07 1.28 5.99 -3.71 -0.02 1.26 16 27 H 0.06 0.70 7.85 -51.93 -0.41 0.30 16 28 H 0.06 0.73 5.64 -51.93 -0.29 0.43 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.41 4.54 8.09 -40.82 -0.33 4.21 16 38 H 0.08 1.55 7.00 -51.93 -0.36 1.19 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.11 2.74 6.03 -51.94 -0.31 2.43 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.13 2.20 4.31 -54.78 -0.24 1.96 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.04 380.18 -9.23 -39.27 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.80 Total: 4.39 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 0.24 Total: 1.05 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.15 Total: -43.89 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.14 Total: -18.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.38 Total: -4.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.04 -9.23 -39.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323592701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.876 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds