Wall clock time and date at job start Tue Mar 31 2020 15:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 C 1.53003 * 109.47085 * 240.00173 * 2 1 3 5 5 S 1.81403 * 109.47319 * 120.00464 * 2 1 3 6 6 C 1.81397 * 102.99871 * 59.99899 * 5 2 1 7 7 C 1.53001 * 109.47058 * 180.02562 * 6 5 2 8 8 N 1.46504 * 109.47294 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21352 * 119.99612 * 359.97438 * 9 8 7 11 11 C 1.49444 * 120.00040 * 180.02562 * 9 8 7 12 12 O 1.21343 * 120.00244 * 354.98254 * 11 9 8 13 13 N 1.34775 * 119.99634 * 175.26615 * 11 9 8 14 14 C 1.46504 * 119.99706 * 185.50576 * 13 11 9 15 15 C 1.53008 * 109.46955 * 183.69064 * 14 13 11 16 16 C 1.50701 * 115.54928 * 306.41002 * 15 14 13 17 17 H 1.08002 * 119.99634 * 145.10991 * 16 15 14 18 18 C 1.37875 * 120.00330 * 325.11820 * 16 15 14 19 19 N 1.31516 * 119.99968 * 349.44791 * 18 16 15 20 20 Si 1.86800 * 120.00208 * 169.45448 * 18 16 15 21 21 H 1.48499 * 109.46903 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47158 * 119.99561 * 20 18 16 23 23 H 1.48507 * 109.46905 * 239.99729 * 20 18 16 24 24 C 1.52995 * 117.49680 * 160.74331 * 15 14 13 25 25 C 1.52996 * 117.49927 * 92.08407 * 15 14 13 26 26 H 1.08992 * 109.47063 * 299.99633 * 1 2 3 27 27 H 1.09000 * 109.47123 * 60.00042 * 1 2 3 28 28 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47833 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47504 * 300.00795 * 3 2 1 31 31 H 1.09006 * 109.46680 * 60.00145 * 3 2 1 32 32 H 1.09003 * 109.47590 * 300.00061 * 4 2 1 33 33 H 1.09008 * 109.47139 * 60.00082 * 4 2 1 34 34 H 1.08995 * 109.47239 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.47478 * 60.00350 * 6 5 2 36 36 H 1.09005 * 109.47277 * 300.00087 * 6 5 2 37 37 H 1.08998 * 109.47563 * 59.99776 * 7 6 5 38 38 H 1.09005 * 109.46787 * 299.99945 * 7 6 5 39 39 H 0.97000 * 119.99937 * 359.97438 * 8 7 6 40 40 H 0.96998 * 120.00335 * 5.49535 * 13 11 9 41 41 H 1.08994 * 109.46955 * 303.69030 * 14 13 11 42 42 H 1.09000 * 109.47239 * 63.69225 * 14 13 11 43 43 H 0.96999 * 120.00319 * 185.02795 * 19 18 16 44 44 H 1.09004 * 117.50172 * 0.02562 * 24 15 14 45 45 H 1.09006 * 117.49733 * 145.01539 * 24 15 14 46 46 H 1.08996 * 117.49683 * 214.98053 * 25 15 14 47 47 H 1.08998 * 117.49786 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 2.1347 -0.8553 1.4811 6 6 1.4375 -2.5205 1.3039 7 6 1.8625 -3.3808 2.4956 8 7 1.3000 -4.7259 2.3523 9 6 1.5431 -5.6616 3.2912 10 8 2.2284 -5.3901 4.2552 11 6 0.9697 -7.0339 3.1447 12 8 0.2118 -7.2803 2.2296 13 7 1.2899 -7.9963 4.0322 14 6 0.8260 -9.3700 3.8222 15 6 1.2454 -10.2372 5.0110 16 6 2.7125 -10.2046 5.3538 17 1 3.0278 -10.2712 6.3846 18 6 3.6523 -10.0895 4.3515 19 7 3.2908 -10.2164 3.0934 20 14 5.4391 -9.7535 4.7805 21 1 5.5837 -9.6534 6.2550 22 1 6.2868 -10.8624 4.2737 23 1 5.8670 -8.4770 4.1537 24 6 0.5002 -11.5569 5.2204 25 6 0.2529 -10.3794 6.1667 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.8032 -2.9712 0.3813 36 1 0.3498 -2.4574 1.2713 37 1 1.4966 -2.9299 3.4181 38 1 2.9502 -3.4438 2.5286 39 1 0.7519 -4.9428 1.5819 40 1 1.8276 -7.7795 4.8099 41 1 -0.2602 -9.3770 3.7327 42 1 1.2684 -9.7673 2.9087 43 1 3.9616 -10.2084 2.3928 44 1 -0.2886 -11.8076 4.5110 45 1 1.0711 -12.4015 5.6064 46 1 0.6611 -10.4497 7.1748 47 1 -0.6986 -9.8549 6.0803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325611975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:47 Heat of formation + Delta-G solvation = -61.486768 kcal Electronic energy + Delta-G solvation = -25527.640889 eV Core-core repulsion = 21837.158281 eV Total energy + Delta-G solvation = -3690.482608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.08510 -38.09725 -36.71581 -36.69523 -35.52908 -33.16781 -32.20692 -30.91091 -27.83524 -27.82867 -26.80359 -25.57709 -24.19686 -22.26475 -21.24643 -20.93381 -19.83776 -19.39015 -18.03307 -16.66907 -16.48982 -16.15819 -15.98239 -15.51648 -15.00029 -14.76391 -14.71449 -14.64576 -14.56032 -14.35152 -13.81109 -13.48277 -13.09723 -12.93011 -12.82119 -12.63259 -12.39212 -12.24135 -11.89844 -11.85695 -11.76846 -11.55549 -11.53415 -11.41506 -11.13684 -11.03146 -10.80194 -10.51818 -10.29884 -10.09238 -9.66568 -9.20020 -9.18547 -9.00585 -8.88016 -8.34409 -8.03024 -7.99889 -6.11949 -4.20908 1.16825 1.95591 2.13928 2.93080 3.23117 3.33964 3.36679 3.79674 4.23890 4.25295 4.26193 4.30618 4.40538 4.55413 4.61790 4.88170 5.03473 5.07553 5.13499 5.20904 5.26364 5.32452 5.33745 5.34857 5.46355 5.50868 5.59394 5.64884 5.73727 5.75978 5.95198 6.24455 6.26401 6.47916 6.54647 6.64470 6.82231 6.99300 7.16754 7.24690 7.37857 7.47276 7.85374 7.98978 8.26404 8.34519 8.75706 8.79468 9.40804 10.85569 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.002391 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.005279 B =11707.604064 C =12456.934490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C -0.128 4.128 4 C -0.146 4.146 5 S -0.231 6.231 6 C -0.106 4.106 7 C 0.136 3.864 8 N -0.708 5.708 9 C 0.510 3.490 10 O -0.517 6.517 11 C 0.496 3.504 12 O -0.549 6.549 13 N -0.649 5.649 14 C 0.158 3.842 15 C 0.034 3.966 16 C -0.497 4.497 17 H 0.064 0.936 18 C 0.075 3.925 19 N -0.872 5.872 20 Si 0.892 3.108 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.193 4.193 25 C -0.211 4.211 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.411 0.589 40 H 0.413 0.587 41 H 0.035 0.965 42 H 0.115 0.885 43 H 0.263 0.737 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 19.642 -8.224 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.186 4.186 4 C -0.205 4.205 5 S -0.004 6.004 6 C -0.255 4.255 7 C 0.012 3.988 8 N -0.364 5.364 9 C 0.291 3.709 10 O -0.391 6.391 11 C 0.275 3.725 12 O -0.429 6.429 13 N -0.297 5.297 14 C 0.036 3.964 15 C 0.033 3.967 16 C -0.534 4.534 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.508 5.508 20 Si 0.719 3.281 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.206 1.206 24 C -0.231 4.231 25 C -0.248 4.248 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.250 0.750 41 H 0.053 0.947 42 H 0.133 0.867 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.025 20.093 -7.516 21.827 hybrid contribution 0.198 -0.470 -0.828 0.972 sum -3.827 19.623 -8.344 21.664 Atomic orbital electron populations 1.22150 0.92623 1.02630 1.03020 1.22715 0.98435 0.98448 0.94923 1.21657 1.01892 0.92323 1.02771 1.22156 1.02252 1.00161 0.95907 1.86909 1.70530 1.09468 1.33448 1.23594 1.04061 0.95512 1.02301 1.20982 0.99809 0.81033 0.97003 1.45678 1.53642 1.10829 1.26266 1.20622 0.81015 0.86493 0.82779 1.90756 1.37005 1.81021 1.30343 1.19710 0.83311 0.85474 0.84021 1.90675 1.36498 1.82248 1.33468 1.45711 1.50515 1.08795 1.24681 1.21225 0.95001 0.78273 1.01931 1.19185 0.92520 0.93635 0.91381 1.20544 0.88162 1.51322 0.93409 0.91739 1.24979 0.99125 0.94011 0.94858 1.69830 1.33597 1.47899 0.99464 0.86526 0.84468 0.78147 0.78967 1.19480 1.20967 1.20620 1.22924 1.03687 0.93670 1.02868 1.22976 1.00908 1.04690 0.96227 0.91243 0.91610 0.92311 0.91569 0.91063 0.91591 0.92291 0.91605 0.91216 0.89062 0.89092 0.90171 0.90167 0.75260 0.75010 0.94710 0.86733 0.92642 0.91418 0.90059 0.90429 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.32 37.16 0.31 -0.59 16 2 C -0.04 -0.24 0.95 -90.62 -0.09 -0.33 16 3 C -0.13 -0.76 8.48 37.16 0.32 -0.45 16 4 C -0.15 -0.93 8.32 37.16 0.31 -0.62 16 5 S -0.23 -2.16 20.65 -107.50 -2.22 -4.38 16 6 C -0.11 -0.95 5.17 37.16 0.19 -0.76 16 7 C 0.14 1.61 5.68 -4.04 -0.02 1.59 16 8 N -0.71 -9.88 5.55 -60.73 -0.34 -10.22 16 9 C 0.51 9.32 7.89 -11.59 -0.09 9.22 16 10 O -0.52 -10.59 16.49 5.49 0.09 -10.50 16 11 C 0.50 10.23 7.88 -11.59 -0.09 10.14 16 12 O -0.55 -11.89 16.48 5.50 0.09 -11.80 16 13 N -0.65 -14.29 5.27 -60.73 -0.32 -14.61 16 14 C 0.16 3.67 4.75 -4.04 -0.02 3.65 16 15 C 0.03 0.79 2.00 -155.66 -0.31 0.48 16 16 C -0.50 -12.73 8.27 -34.44 -0.28 -13.02 16 17 H 0.06 1.67 7.84 -52.49 -0.41 1.25 16 18 C 0.07 1.93 5.13 -17.82 -0.09 1.84 16 19 N -0.87 -23.16 10.75 55.43 0.60 -22.57 16 20 Si 0.89 20.61 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.19 -4.17 9.96 -26.70 -0.27 -4.44 16 25 C -0.21 -4.37 9.92 -26.70 -0.26 -4.64 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.37 6.68 -51.93 -0.35 0.03 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 6.68 -51.93 -0.35 0.04 16 33 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.76 6.99 -51.93 -0.36 0.39 16 36 H 0.09 0.72 7.00 -51.92 -0.36 0.36 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.41 5.10 7.95 -40.82 -0.32 4.77 16 40 H 0.41 9.27 7.41 -40.82 -0.30 8.97 16 41 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 42 H 0.12 2.98 6.04 -51.93 -0.31 2.66 16 43 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 46 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -28.59 397.58 -9.36 -37.95 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.82 Total: 12.47 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.40 Total: 2.08 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.06 Total: -47.40 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.18 Total: -22.30 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.22 Total: -4.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.59 -9.36 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325611975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.536 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds