Wall clock time and date at job start Tue Mar 31 2020 15:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 C 1.53003 * 109.47085 * 240.00173 * 2 1 3 5 5 S 1.81403 * 109.47319 * 120.00464 * 2 1 3 6 6 C 1.81397 * 102.99871 * 59.99899 * 5 2 1 7 7 C 1.53001 * 109.47058 * 180.02562 * 6 5 2 8 8 N 1.46504 * 109.47294 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21352 * 119.99612 * 359.97438 * 9 8 7 11 11 C 1.49444 * 120.00040 * 180.02562 * 9 8 7 12 12 O 1.21343 * 120.00244 * 354.98254 * 11 9 8 13 13 N 1.34775 * 119.99634 * 175.26615 * 11 9 8 14 14 C 1.46504 * 119.99706 * 185.50576 * 13 11 9 15 15 C 1.53008 * 109.46955 * 183.69064 * 14 13 11 16 16 C 1.50701 * 115.54928 * 306.41002 * 15 14 13 17 17 H 1.08002 * 119.99634 * 145.10991 * 16 15 14 18 18 C 1.37875 * 120.00330 * 325.11820 * 16 15 14 19 19 N 1.31516 * 119.99968 * 349.44791 * 18 16 15 20 20 Si 1.86800 * 120.00208 * 169.45448 * 18 16 15 21 21 H 1.48499 * 109.46903 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47158 * 119.99561 * 20 18 16 23 23 H 1.48507 * 109.46905 * 239.99729 * 20 18 16 24 24 C 1.52995 * 117.49680 * 160.74331 * 15 14 13 25 25 C 1.52996 * 117.49927 * 92.08407 * 15 14 13 26 26 H 1.08992 * 109.47063 * 299.99633 * 1 2 3 27 27 H 1.09000 * 109.47123 * 60.00042 * 1 2 3 28 28 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47833 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47504 * 300.00795 * 3 2 1 31 31 H 1.09006 * 109.46680 * 60.00145 * 3 2 1 32 32 H 1.09003 * 109.47590 * 300.00061 * 4 2 1 33 33 H 1.09008 * 109.47139 * 60.00082 * 4 2 1 34 34 H 1.08995 * 109.47239 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.47478 * 60.00350 * 6 5 2 36 36 H 1.09005 * 109.47277 * 300.00087 * 6 5 2 37 37 H 1.08998 * 109.47563 * 59.99776 * 7 6 5 38 38 H 1.09005 * 109.46787 * 299.99945 * 7 6 5 39 39 H 0.97000 * 119.99937 * 359.97438 * 8 7 6 40 40 H 0.96998 * 120.00335 * 5.49535 * 13 11 9 41 41 H 1.08994 * 109.46955 * 303.69030 * 14 13 11 42 42 H 1.09000 * 109.47239 * 63.69225 * 14 13 11 43 43 H 0.96999 * 120.00319 * 185.02795 * 19 18 16 44 44 H 1.09004 * 117.50172 * 0.02562 * 24 15 14 45 45 H 1.09006 * 117.49733 * 145.01539 * 24 15 14 46 46 H 1.08996 * 117.49683 * 214.98053 * 25 15 14 47 47 H 1.08998 * 117.49786 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 2.1347 -0.8553 1.4811 6 6 1.4375 -2.5205 1.3039 7 6 1.8625 -3.3808 2.4956 8 7 1.3000 -4.7259 2.3523 9 6 1.5431 -5.6616 3.2912 10 8 2.2284 -5.3901 4.2552 11 6 0.9697 -7.0339 3.1447 12 8 0.2118 -7.2803 2.2296 13 7 1.2899 -7.9963 4.0322 14 6 0.8260 -9.3700 3.8222 15 6 1.2454 -10.2372 5.0110 16 6 2.7125 -10.2046 5.3538 17 1 3.0278 -10.2712 6.3846 18 6 3.6523 -10.0895 4.3515 19 7 3.2908 -10.2164 3.0934 20 14 5.4391 -9.7535 4.7805 21 1 5.5837 -9.6534 6.2550 22 1 6.2868 -10.8624 4.2737 23 1 5.8670 -8.4770 4.1537 24 6 0.5002 -11.5569 5.2204 25 6 0.2529 -10.3794 6.1667 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.8032 -2.9712 0.3813 36 1 0.3498 -2.4574 1.2713 37 1 1.4966 -2.9299 3.4181 38 1 2.9502 -3.4438 2.5286 39 1 0.7519 -4.9428 1.5819 40 1 1.8276 -7.7795 4.8099 41 1 -0.2602 -9.3770 3.7327 42 1 1.2684 -9.7673 2.9087 43 1 3.9616 -10.2084 2.3928 44 1 -0.2886 -11.8076 4.5110 45 1 1.0711 -12.4015 5.6064 46 1 0.6611 -10.4497 7.1748 47 1 -0.6986 -9.8549 6.0803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325611975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:46 Heat of formation + Delta-G solvation = -78.502727 kcal Electronic energy + Delta-G solvation = -25528.378756 eV Core-core repulsion = 21837.158281 eV Total energy + Delta-G solvation = -3691.220475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61277 -39.69713 -38.44819 -37.23493 -36.76582 -34.85561 -34.15399 -31.96819 -28.63031 -28.30649 -28.21895 -27.49422 -25.48643 -23.50199 -22.92890 -21.52771 -21.32845 -21.18416 -19.63359 -18.13383 -17.96200 -17.23087 -17.06549 -16.81772 -16.70626 -16.19464 -16.13027 -15.55980 -15.38281 -15.18315 -15.11608 -14.91978 -14.70395 -14.35228 -13.65481 -13.52075 -13.47068 -13.41694 -13.19824 -12.93935 -12.84438 -12.79177 -12.67827 -12.55582 -12.40275 -12.30926 -12.05286 -12.03349 -11.91808 -11.44715 -11.10175 -10.73676 -10.70900 -10.61028 -10.42946 -10.17080 -9.83382 -8.72753 -8.07373 -6.20620 0.40115 0.44187 1.37442 1.42800 1.45231 1.52120 1.60777 2.22063 2.38884 2.78887 3.04564 3.51088 3.56256 3.68541 3.73768 3.76573 3.79511 4.11997 4.21923 4.27286 4.49987 4.55741 4.63257 4.66093 4.69794 4.70721 4.75874 4.79307 4.85455 4.88145 4.88819 4.97557 5.02780 5.07064 5.14678 5.26814 5.26973 5.28469 5.46242 5.55474 5.58962 5.88780 5.97003 6.34643 6.50098 6.75413 6.83612 7.08101 7.42068 8.87940 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.002391 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.005279 B =11707.604064 C =12456.934490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 C -0.127 4.127 4 C -0.146 4.146 5 S -0.273 6.273 6 C -0.092 4.092 7 C 0.138 3.862 8 N -0.686 5.686 9 C 0.513 3.487 10 O -0.543 6.543 11 C 0.494 3.506 12 O -0.560 6.560 13 N -0.655 5.655 14 C 0.170 3.830 15 C 0.002 3.998 16 C -0.505 4.505 17 H 0.057 0.943 18 C 0.039 3.961 19 N -0.892 5.892 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.288 1.288 24 C -0.189 4.189 25 C -0.188 4.188 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.421 0.579 40 H 0.410 0.590 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.260 0.740 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 20.892 -8.865 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.186 4.186 4 C -0.204 4.204 5 S -0.046 6.046 6 C -0.241 4.241 7 C 0.014 3.986 8 N -0.341 5.341 9 C 0.293 3.707 10 O -0.420 6.420 11 C 0.274 3.726 12 O -0.441 6.441 13 N -0.303 5.303 14 C 0.047 3.953 15 C 0.001 3.999 16 C -0.542 4.542 17 H 0.075 0.925 18 C -0.163 4.163 19 N -0.529 5.529 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.214 1.214 24 C -0.228 4.228 25 C -0.225 4.225 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.259 0.741 40 H 0.246 0.754 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.847 21.359 -8.181 23.381 hybrid contribution 0.404 -0.802 -0.666 1.118 sum -4.443 20.557 -8.847 22.817 Atomic orbital electron populations 1.22147 0.91807 1.02751 1.03613 1.22817 0.98959 0.98433 0.93354 1.21679 1.01586 0.91811 1.03512 1.22155 1.01888 1.00199 0.96187 1.87082 1.71294 1.10189 1.35992 1.23454 1.04848 0.94669 1.01083 1.21073 0.99103 0.79969 0.98461 1.45601 1.52415 1.10880 1.25196 1.20185 0.81022 0.86110 0.83361 1.90749 1.38435 1.81219 1.31611 1.20120 0.82827 0.86307 0.83333 1.90657 1.36963 1.82788 1.33715 1.45690 1.50813 1.08752 1.25002 1.20936 0.94948 0.78830 1.00596 1.19257 0.92241 0.95315 0.93096 1.20715 0.89591 1.50957 0.92970 0.92493 1.25480 1.01735 0.94187 0.94869 1.69952 1.34069 1.48985 0.99891 0.85776 0.81411 0.77472 0.78703 1.19125 1.20704 1.21416 1.22931 1.03476 0.93085 1.03299 1.22978 1.00582 1.03394 0.95536 0.91620 0.90032 0.92427 0.92125 0.89144 0.91949 0.92500 0.89992 0.91861 0.88126 0.87644 0.90398 0.91168 0.74106 0.75377 0.94046 0.89687 0.93000 0.90063 0.90497 0.89944 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.32 71.98 0.60 -0.85 16 2 C -0.03 -0.31 0.95 -10.79 -0.01 -0.32 16 3 C -0.13 -1.30 8.48 71.98 0.61 -0.69 16 4 C -0.15 -1.57 8.32 71.98 0.60 -0.97 16 5 S -0.27 -4.84 20.65 -56.49 -1.17 -6.01 16 6 C -0.09 -1.51 5.17 71.98 0.37 -1.14 16 7 C 0.14 3.13 5.68 86.38 0.49 3.62 16 8 N -0.69 -18.42 5.55 -464.40 -2.58 -21.00 16 9 C 0.51 18.55 7.89 87.27 0.69 19.24 16 10 O -0.54 -22.25 16.49 -3.25 -0.05 -22.31 16 11 C 0.49 20.31 7.88 87.27 0.69 21.00 16 12 O -0.56 -24.04 16.48 -3.23 -0.05 -24.09 16 13 N -0.65 -28.93 5.27 -464.41 -2.45 -31.38 16 14 C 0.17 7.88 4.75 86.38 0.41 8.29 16 15 C 0.00 0.07 2.00 -52.93 -0.11 -0.03 16 16 C -0.50 -25.83 8.27 25.60 0.21 -25.62 16 17 H 0.06 2.93 7.84 -2.91 -0.02 2.91 16 18 C 0.04 2.03 5.13 84.65 0.43 2.47 16 19 N -0.89 -47.92 10.75 21.45 0.23 -47.69 16 20 Si 0.94 42.50 29.55 68.60 2.03 44.53 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 C -0.19 -7.95 9.96 30.62 0.30 -7.65 16 25 C -0.19 -7.46 9.92 30.62 0.30 -7.15 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.60 6.68 -2.39 -0.02 0.58 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.64 6.68 -2.39 -0.02 0.62 16 33 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 1.48 6.99 -2.39 -0.02 1.46 16 36 H 0.11 1.44 7.00 -2.39 -0.02 1.42 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.42 9.78 7.95 -92.71 -0.74 9.04 16 40 H 0.41 18.58 7.41 -92.71 -0.69 17.89 16 41 H 0.04 1.83 8.06 -2.39 -0.02 1.81 16 42 H 0.09 4.49 6.04 -2.39 -0.01 4.47 16 43 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 44 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 45 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 46 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -60.45 397.58 1.11 -59.34 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.45 Total: 38.39 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.60 Total: 10.20 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.79 Total: -100.06 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.11 Total: -46.40 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -1.17 Total: -6.01 kcal Total: -60.45 1.11 -59.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325611975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.158 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds