Wall clock time and date at job start Tue Mar 31 2020 16:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 H 1.09007 * 109.46704 * 304.99756 * 3 2 1 5 5 C 1.53004 * 109.47287 * 184.99865 * 3 2 1 6 6 S 1.81400 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.81405 * 102.99552 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.47295 * 64.99706 * 3 2 1 9 9 C 1.46498 * 120.00278 * 60.00254 * 8 3 2 10 10 C 1.34783 * 119.99858 * 240.00022 * 8 3 2 11 11 O 1.21348 * 119.99983 * 358.84481 * 10 8 3 12 12 C 1.49442 * 119.99736 * 178.83969 * 10 8 3 13 13 O 1.21349 * 120.00611 * 4.28500 * 12 10 8 14 14 N 1.34788 * 119.99926 * 184.28812 * 12 10 8 15 15 C 1.46494 * 120.00067 * 185.05224 * 14 12 10 16 16 C 1.52999 * 109.47356 * 184.85042 * 15 14 12 17 17 C 1.50703 * 115.55100 * 306.55289 * 16 15 14 18 18 H 1.07995 * 120.00397 * 123.61342 * 17 16 15 19 19 C 1.37880 * 119.99469 * 303.33487 * 17 16 15 20 20 N 1.31512 * 119.99933 * 174.19591 * 19 17 16 21 21 Si 1.86803 * 120.00257 * 354.20000 * 19 17 16 22 22 H 1.48499 * 109.47010 * 94.55053 * 21 19 17 23 23 H 1.48497 * 109.47099 * 214.55228 * 21 19 17 24 24 H 1.48501 * 109.46981 * 334.55052 * 21 19 17 25 25 C 1.52999 * 117.49813 * 92.21490 * 16 15 14 26 26 C 1.52995 * 117.49979 * 160.87542 * 16 15 14 27 27 H 1.09001 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47382 * 300.00672 * 1 2 3 29 29 H 1.08997 * 109.46854 * 60.00466 * 1 2 3 30 30 H 1.08998 * 109.47370 * 239.99846 * 2 1 3 31 31 H 1.09007 * 109.47169 * 119.99090 * 2 1 3 32 32 H 1.08990 * 109.46948 * 299.99678 * 5 3 2 33 33 H 1.08994 * 109.46735 * 59.99856 * 5 3 2 34 34 H 1.09000 * 109.47223 * 299.99828 * 7 6 5 35 35 H 1.08993 * 109.47414 * 59.99846 * 7 6 5 36 36 H 1.08999 * 109.46940 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47165 * 262.55915 * 9 8 3 38 38 H 1.09000 * 109.46609 * 22.56003 * 9 8 3 39 39 H 1.08998 * 109.46806 * 142.55608 * 9 8 3 40 40 H 0.97000 * 119.99812 * 5.04838 * 14 12 10 41 41 H 1.09005 * 109.47232 * 64.85408 * 15 14 12 42 42 H 1.08998 * 109.47350 * 304.85226 * 15 14 12 43 43 H 0.97003 * 120.00188 * 179.97438 * 20 19 17 44 44 H 1.08996 * 117.50127 * 215.00885 * 25 16 15 45 45 H 1.09004 * 117.50010 * 0.02562 * 25 16 15 46 46 H 1.08997 * 117.50109 * 359.97438 * 26 16 15 47 47 H 1.09007 * 117.49636 * 144.97758 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 16 4.1694 3.1546 -0.1264 7 6 5.9655 2.9524 -0.2811 8 7 1.6524 2.0975 1.2518 9 6 2.1138 1.5591 2.5337 10 6 0.8713 3.1956 1.2240 11 8 0.5064 3.6539 0.1612 12 6 0.4546 3.8487 2.5019 13 8 0.8819 3.4378 3.5608 14 7 -0.3959 4.8940 2.4785 15 6 -0.7181 5.6041 3.7187 16 6 -1.7888 6.6605 3.4381 17 6 -1.4750 7.6236 2.3223 18 1 -2.1558 7.7266 1.4903 19 6 -0.3215 8.3776 2.3665 20 7 0.0104 9.1324 1.3420 21 14 0.7701 8.3270 3.8816 22 1 1.8453 7.3221 3.6837 23 1 1.3768 9.6647 4.0995 24 1 -0.0443 7.9539 5.0661 25 6 -3.2509 6.2523 3.6286 26 6 -2.5825 7.1961 4.6314 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.9994 0.9054 0.7161 33 1 3.8532 0.9570 -1.0570 34 1 6.3404 2.3759 0.5646 35 1 6.1934 2.4271 -1.2085 36 1 6.4419 3.9327 -0.2919 37 1 1.3335 0.9335 2.9670 38 1 3.0118 0.9621 2.3749 39 1 2.3394 2.3812 3.2129 40 1 -0.7947 5.1761 1.6404 41 1 0.1791 6.0894 4.1031 42 1 -1.0922 4.8948 4.4569 43 1 0.8218 9.6631 1.3732 44 1 -3.9859 6.6803 2.9470 45 1 -3.4501 5.2313 3.9542 46 1 -2.3423 6.7956 5.6163 47 1 -2.8774 8.2453 4.6096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326145628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:05 Heat of formation + Delta-G solvation = -34.403164 kcal Electronic energy + Delta-G solvation = -27164.286623 eV Core-core repulsion = 23474.978448 eV Total energy + Delta-G solvation = -3689.308175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55200 -38.57092 -37.01074 -36.82961 -33.76573 -32.78645 -32.18918 -30.44197 -29.05040 -27.48180 -26.84120 -25.55300 -24.47394 -23.22728 -21.57895 -20.50846 -19.64091 -19.04802 -17.57572 -17.01820 -16.43547 -16.23939 -16.06427 -15.51461 -15.23697 -14.59879 -14.49942 -14.27160 -14.19595 -14.02896 -13.59466 -13.51772 -13.15904 -13.11890 -12.92254 -12.87078 -12.68668 -12.33134 -12.28514 -12.15466 -12.14014 -11.44384 -11.26422 -11.09972 -11.05510 -10.80948 -10.69288 -10.54206 -10.22901 -9.99494 -9.58465 -9.24503 -9.00353 -8.86140 -8.68625 -8.47845 -8.33488 -7.71899 -6.16393 -4.18393 1.51254 1.85968 2.47390 2.61572 3.28370 3.38666 3.41038 3.63049 3.86922 4.33722 4.37962 4.69993 4.75211 4.78077 4.92407 4.94315 4.97687 5.02453 5.04832 5.20068 5.23114 5.37318 5.50394 5.51242 5.59919 5.64085 5.70728 5.73268 5.89107 5.89616 6.05446 6.11310 6.12620 6.16379 6.41059 6.46074 6.48044 6.65556 6.84367 6.99116 7.10948 7.20142 7.66261 7.81957 8.20273 8.42360 8.55215 8.86913 9.46260 10.94573 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.004126 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.100567 B = 6784.855184 C = 7863.339709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.152 3.848 4 H 0.113 0.887 5 C -0.103 4.103 6 S -0.232 6.232 7 C -0.129 4.129 8 N -0.582 5.582 9 C 0.072 3.928 10 C 0.512 3.488 11 O -0.508 6.508 12 C 0.499 3.501 13 O -0.538 6.538 14 N -0.662 5.662 15 C 0.149 3.851 16 C -0.016 4.016 17 C -0.493 4.493 18 H 0.081 0.919 19 C 0.087 3.913 20 N -0.885 5.885 21 Si 0.868 3.132 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.253 1.253 25 C -0.180 4.180 26 C -0.189 4.189 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.422 0.578 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.266 0.734 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -19.277 -1.167 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.047 3.953 4 H 0.131 0.869 5 C -0.253 4.253 6 S -0.006 6.006 7 C -0.298 4.298 8 N -0.317 5.317 9 C -0.070 4.070 10 C 0.295 3.705 11 O -0.382 6.382 12 C 0.279 3.721 13 O -0.418 6.418 14 N -0.313 5.313 15 C 0.026 3.974 16 C -0.018 4.018 17 C -0.530 4.530 18 H 0.099 0.901 19 C -0.118 4.118 20 N -0.521 5.521 21 Si 0.696 3.304 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.177 1.177 25 C -0.217 4.217 26 C -0.227 4.227 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.126 -18.173 -1.013 19.546 hybrid contribution 1.455 -0.910 0.358 1.753 sum 8.581 -19.083 -0.655 20.934 Atomic orbital electron populations 1.21709 0.94712 1.01583 1.02697 1.21845 0.97210 0.94694 1.02724 1.20936 0.91188 0.94375 0.88765 0.86861 1.23905 0.99282 0.96922 1.05154 1.87747 1.04776 1.10832 1.97245 1.23399 0.95654 1.06387 1.04331 1.47561 1.49515 1.27151 1.07481 1.22262 0.98663 1.01536 0.84581 1.20284 0.79448 0.80722 0.90038 1.90772 1.54167 1.61835 1.31419 1.19951 0.80988 0.82044 0.89066 1.90591 1.55196 1.64144 1.31882 1.45800 1.42861 1.28887 1.13784 1.21212 0.98502 0.93178 0.84488 1.19559 0.88512 0.96403 0.97290 1.20256 1.07387 1.20519 1.04833 0.90144 1.24905 0.96958 0.94473 0.95452 1.69882 1.24821 1.27876 1.29474 0.87065 0.81262 0.77025 0.85066 1.20399 1.21880 1.17746 1.22814 0.97366 0.98037 1.03498 1.23069 1.07129 0.98965 0.93563 0.92517 0.92523 0.92253 0.90594 0.91287 0.89731 0.89004 0.90770 0.90762 0.88079 0.92646 0.92365 0.87291 0.73887 0.92418 0.92243 0.92365 0.89539 0.90837 0.91138 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.80 37.15 0.36 -1.08 16 2 C -0.12 -1.05 5.36 -26.73 -0.14 -1.20 16 3 C 0.15 1.72 2.07 -67.93 -0.14 1.58 16 4 H 0.11 1.55 6.90 -51.92 -0.36 1.19 16 5 C -0.10 -1.01 5.30 37.16 0.20 -0.81 16 6 S -0.23 -3.10 21.96 -107.50 -2.36 -5.46 16 7 C -0.13 -1.17 10.76 101.05 1.09 -0.09 16 8 N -0.58 -8.09 1.75 -174.44 -0.31 -8.40 16 9 C 0.07 0.87 8.39 59.85 0.50 1.37 16 10 C 0.51 9.19 7.74 -11.59 -0.09 9.10 16 11 O -0.51 -10.29 15.82 5.50 0.09 -10.20 16 12 C 0.50 9.82 7.79 -11.58 -0.09 9.73 16 13 O -0.54 -10.67 13.12 5.50 0.07 -10.60 16 14 N -0.66 -13.96 5.39 -60.73 -0.33 -14.28 16 15 C 0.15 3.21 4.98 -4.05 -0.02 3.19 16 16 C -0.02 -0.37 1.01 -155.66 -0.16 -0.52 16 17 C -0.49 -13.14 8.63 -34.44 -0.30 -13.44 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 19 C 0.09 2.42 5.46 -17.82 -0.10 2.33 16 20 N -0.88 -26.48 13.96 55.43 0.77 -25.70 16 21 Si 0.87 21.62 24.52 -169.99 -4.17 17.45 16 22 H -0.28 -7.08 7.07 56.52 0.40 -6.68 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.25 -5.91 6.21 56.52 0.35 -5.56 16 25 C -0.18 -3.49 9.92 -26.69 -0.26 -3.76 16 26 C -0.19 -3.83 9.00 -26.70 -0.24 -4.07 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 7.49 -51.93 -0.39 0.13 16 32 H 0.08 0.71 6.68 -51.93 -0.35 0.36 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 39 H 0.11 1.62 5.50 -51.93 -0.29 1.33 16 40 H 0.42 9.25 7.40 -40.82 -0.30 8.95 16 41 H 0.06 1.35 4.19 -51.93 -0.22 1.13 16 42 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -31.17 387.59 -7.52 -38.69 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.74 Total: 10.31 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 0.61 Total: 2.36 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.14 Total: -48.38 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.16 Total: -20.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.17 Total: 17.45 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.36 Total: -5.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.17 -7.52 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds