Wall clock time and date at job start Tue Mar 31 2020 16:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 H 1.09007 * 109.46704 * 304.99756 * 3 2 1 5 5 C 1.53004 * 109.47287 * 184.99865 * 3 2 1 6 6 S 1.81400 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.81405 * 102.99552 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.47295 * 64.99706 * 3 2 1 9 9 C 1.46498 * 120.00278 * 60.00254 * 8 3 2 10 10 C 1.34783 * 119.99858 * 240.00022 * 8 3 2 11 11 O 1.21348 * 119.99983 * 358.84481 * 10 8 3 12 12 C 1.49442 * 119.99736 * 178.83969 * 10 8 3 13 13 O 1.21349 * 120.00611 * 4.28500 * 12 10 8 14 14 N 1.34788 * 119.99926 * 184.28812 * 12 10 8 15 15 C 1.46494 * 120.00067 * 185.05224 * 14 12 10 16 16 C 1.52999 * 109.47356 * 184.85042 * 15 14 12 17 17 C 1.50703 * 115.55100 * 306.55289 * 16 15 14 18 18 H 1.07995 * 120.00397 * 123.61342 * 17 16 15 19 19 C 1.37880 * 119.99469 * 303.33487 * 17 16 15 20 20 N 1.31512 * 119.99933 * 174.19591 * 19 17 16 21 21 Si 1.86803 * 120.00257 * 354.20000 * 19 17 16 22 22 H 1.48499 * 109.47010 * 94.55053 * 21 19 17 23 23 H 1.48497 * 109.47099 * 214.55228 * 21 19 17 24 24 H 1.48501 * 109.46981 * 334.55052 * 21 19 17 25 25 C 1.52999 * 117.49813 * 92.21490 * 16 15 14 26 26 C 1.52995 * 117.49979 * 160.87542 * 16 15 14 27 27 H 1.09001 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47382 * 300.00672 * 1 2 3 29 29 H 1.08997 * 109.46854 * 60.00466 * 1 2 3 30 30 H 1.08998 * 109.47370 * 239.99846 * 2 1 3 31 31 H 1.09007 * 109.47169 * 119.99090 * 2 1 3 32 32 H 1.08990 * 109.46948 * 299.99678 * 5 3 2 33 33 H 1.08994 * 109.46735 * 59.99856 * 5 3 2 34 34 H 1.09000 * 109.47223 * 299.99828 * 7 6 5 35 35 H 1.08993 * 109.47414 * 59.99846 * 7 6 5 36 36 H 1.08999 * 109.46940 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47165 * 262.55915 * 9 8 3 38 38 H 1.09000 * 109.46609 * 22.56003 * 9 8 3 39 39 H 1.08998 * 109.46806 * 142.55608 * 9 8 3 40 40 H 0.97000 * 119.99812 * 5.04838 * 14 12 10 41 41 H 1.09005 * 109.47232 * 64.85408 * 15 14 12 42 42 H 1.08998 * 109.47350 * 304.85226 * 15 14 12 43 43 H 0.97003 * 120.00188 * 179.97438 * 20 19 17 44 44 H 1.08996 * 117.50127 * 215.00885 * 25 16 15 45 45 H 1.09004 * 117.50010 * 0.02562 * 25 16 15 46 46 H 1.08997 * 117.50109 * 359.97438 * 26 16 15 47 47 H 1.09007 * 117.49636 * 144.97758 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 16 4.1694 3.1546 -0.1264 7 6 5.9655 2.9524 -0.2811 8 7 1.6524 2.0975 1.2518 9 6 2.1138 1.5591 2.5337 10 6 0.8713 3.1956 1.2240 11 8 0.5064 3.6539 0.1612 12 6 0.4546 3.8487 2.5019 13 8 0.8819 3.4378 3.5608 14 7 -0.3959 4.8940 2.4785 15 6 -0.7181 5.6041 3.7187 16 6 -1.7888 6.6605 3.4381 17 6 -1.4750 7.6236 2.3223 18 1 -2.1558 7.7266 1.4903 19 6 -0.3215 8.3776 2.3665 20 7 0.0104 9.1324 1.3420 21 14 0.7701 8.3270 3.8816 22 1 1.8453 7.3221 3.6837 23 1 1.3768 9.6647 4.0995 24 1 -0.0443 7.9539 5.0661 25 6 -3.2509 6.2523 3.6286 26 6 -2.5825 7.1961 4.6314 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.9994 0.9054 0.7161 33 1 3.8532 0.9570 -1.0570 34 1 6.3404 2.3759 0.5646 35 1 6.1934 2.4271 -1.2085 36 1 6.4419 3.9327 -0.2919 37 1 1.3335 0.9335 2.9670 38 1 3.0118 0.9621 2.3749 39 1 2.3394 2.3812 3.2129 40 1 -0.7947 5.1761 1.6404 41 1 0.1791 6.0894 4.1031 42 1 -1.0922 4.8948 4.4569 43 1 0.8218 9.6631 1.3732 44 1 -3.9859 6.6803 2.9470 45 1 -3.4501 5.2313 3.9542 46 1 -2.3423 6.7956 5.6163 47 1 -2.8774 8.2453 4.6096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326145628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:04 Heat of formation + Delta-G solvation = -54.714149 kcal Electronic energy + Delta-G solvation = -27165.167374 eV Core-core repulsion = 23474.978448 eV Total energy + Delta-G solvation = -3690.188925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92030 -40.00769 -38.68057 -38.03501 -35.22608 -34.31740 -33.91126 -31.25140 -29.78343 -29.10771 -27.98065 -27.46023 -25.65121 -24.29898 -23.16985 -21.71891 -21.24562 -20.49351 -19.08870 -18.32379 -18.14217 -17.46471 -17.29191 -16.96907 -16.92607 -16.03130 -15.84180 -15.47854 -15.13021 -14.98515 -14.94134 -14.88200 -14.61236 -14.38991 -14.07250 -13.99491 -13.87743 -13.75447 -13.60825 -13.41949 -13.02890 -12.94609 -12.65841 -12.37985 -12.21512 -12.14458 -12.07226 -11.99466 -11.77048 -11.48334 -11.11004 -10.86348 -10.77384 -10.55171 -10.26900 -10.07337 -9.77244 -8.73533 -8.33668 -6.36589 0.39178 0.68650 1.27520 1.32349 1.32913 1.42515 1.68895 2.16910 2.30230 2.50728 2.95364 3.31185 3.41367 3.54928 3.92933 3.95878 3.99866 4.16562 4.22812 4.26675 4.30147 4.31262 4.42623 4.46632 4.47900 4.54785 4.66112 4.72277 4.74179 4.83501 4.86198 4.92747 4.95463 5.02480 5.03732 5.14031 5.23086 5.32039 5.35703 5.49581 5.54372 5.65676 5.93612 6.26721 6.32904 6.69260 6.74538 6.98265 7.30233 8.81264 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.004126 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.100567 B = 6784.855184 C = 7863.339709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.146 3.854 4 H 0.084 0.916 5 C -0.077 4.077 6 S -0.345 6.345 7 C -0.103 4.103 8 N -0.566 5.566 9 C 0.071 3.929 10 C 0.508 3.492 11 O -0.545 6.545 12 C 0.495 3.505 13 O -0.539 6.539 14 N -0.675 5.675 15 C 0.155 3.845 16 C -0.048 4.048 17 C -0.480 4.480 18 H 0.041 0.959 19 C 0.036 3.964 20 N -0.937 5.937 21 Si 0.920 3.080 22 H -0.290 1.290 23 H -0.295 1.295 24 H -0.222 1.222 25 C -0.159 4.159 26 C -0.177 4.177 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.415 0.585 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -22.942 0.611 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.042 3.958 4 H 0.103 0.897 5 C -0.225 4.225 6 S -0.120 6.120 7 C -0.272 4.272 8 N -0.299 5.299 9 C -0.071 4.071 10 C 0.290 3.710 11 O -0.422 6.422 12 C 0.277 3.723 13 O -0.419 6.419 14 N -0.325 5.325 15 C 0.032 3.968 16 C -0.049 4.049 17 C -0.518 4.518 18 H 0.059 0.941 19 C -0.164 4.164 20 N -0.576 5.576 21 Si 0.747 3.253 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.145 1.145 25 C -0.195 4.195 26 C -0.215 4.215 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.252 0.748 41 H 0.057 0.943 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.093 -21.895 0.810 23.357 hybrid contribution 1.135 0.127 -0.261 1.172 sum 9.229 -21.768 0.549 23.650 Atomic orbital electron populations 1.21712 0.95910 1.02322 1.00820 1.21844 0.96019 0.92431 1.05114 1.21203 0.92548 0.95605 0.86421 0.89742 1.23878 0.97332 0.93669 1.07643 1.88203 1.10159 1.16032 1.97600 1.23361 0.90970 1.06786 1.06055 1.47661 1.47395 1.25501 1.09323 1.22317 1.00565 1.00952 0.83230 1.20056 0.80354 0.81808 0.88760 1.90755 1.56144 1.63256 1.32078 1.20337 0.80407 0.81705 0.89901 1.90591 1.54915 1.64201 1.32195 1.45869 1.43666 1.29602 1.13346 1.21127 0.97264 0.93241 0.85125 1.19450 0.90900 0.96889 0.97671 1.20379 1.05980 1.20493 1.04898 0.94114 1.25586 0.98552 0.94486 0.97748 1.70019 1.25760 1.30018 1.31793 0.86227 0.79566 0.76231 0.83275 1.21775 1.22266 1.14457 1.22875 0.94759 0.99480 1.02432 1.23108 1.05208 0.99101 0.94063 0.90387 0.94828 0.93805 0.87688 0.89219 0.87320 0.86174 0.89072 0.88792 0.88456 0.91483 0.88676 0.89934 0.74839 0.94272 0.89823 0.92667 0.89981 0.87868 0.88252 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.80 71.98 0.71 -1.93 16 2 C -0.11 -1.54 5.36 30.59 0.16 -1.37 16 3 C 0.15 3.07 2.07 44.99 0.09 3.16 16 4 H 0.08 2.33 6.90 -2.38 -0.02 2.32 16 5 C -0.08 -1.27 5.30 71.98 0.38 -0.89 16 6 S -0.35 -9.10 21.96 -56.49 -1.24 -10.34 16 7 C -0.10 -1.67 10.76 113.37 1.22 -0.45 16 8 N -0.57 -15.24 1.75 -824.17 -1.44 -16.68 16 9 C 0.07 1.56 8.39 127.77 1.07 2.63 16 10 C 0.51 18.68 7.74 87.27 0.68 19.36 16 11 O -0.54 -23.33 15.82 -3.24 -0.05 -23.38 16 12 C 0.50 19.72 7.79 87.26 0.68 20.40 16 13 O -0.54 -21.07 13.12 -3.24 -0.04 -21.12 16 14 N -0.67 -28.90 5.39 -464.42 -2.50 -31.41 16 15 C 0.16 6.53 4.98 86.38 0.43 6.96 16 16 C -0.05 -2.11 1.01 -52.93 -0.05 -2.16 16 17 C -0.48 -26.39 8.63 25.60 0.22 -26.17 16 18 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 19 C 0.04 2.05 5.46 84.66 0.46 2.51 16 20 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 21 Si 0.92 45.42 24.52 68.60 1.68 47.10 16 22 H -0.29 -14.84 7.07 99.48 0.70 -14.13 16 23 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.22 -9.71 6.21 99.48 0.62 -9.09 16 25 C -0.16 -5.80 9.92 30.62 0.30 -5.50 16 26 C -0.18 -6.67 9.00 30.62 0.28 -6.39 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.03 0.73 7.75 -2.39 -0.02 0.71 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.90 7.49 -2.38 -0.02 0.88 16 32 H 0.11 1.30 6.68 -2.40 -0.02 1.29 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.39 6.43 -2.39 -0.02 1.38 16 39 H 0.08 2.35 5.50 -2.39 -0.01 2.34 16 40 H 0.41 19.03 7.40 -92.71 -0.69 18.35 16 41 H 0.04 1.79 4.19 -2.38 -0.01 1.78 16 42 H 0.08 3.09 8.04 -2.39 -0.02 3.07 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 46 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -73.23 387.59 3.52 -69.71 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.19 Total: 34.53 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.63 Total: 10.17 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.65 Total: -106.67 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.09 Total: -44.50 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.68 Total: 47.10 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.24 Total: -10.34 kcal Total: -73.23 3.52 -69.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.997 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds