Wall clock time and date at job start Tue Mar 31 2020 16:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 H 1.08994 * 109.47302 * 54.99431 * 3 2 1 5 5 C 1.53003 * 109.47385 * 175.00047 * 3 2 1 6 6 S 1.81393 * 109.47226 * 184.99625 * 5 3 2 7 7 C 1.81397 * 103.00111 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.46620 * 294.99764 * 3 2 1 9 9 C 1.46500 * 120.00254 * 299.99867 * 8 3 2 10 10 C 1.34786 * 119.99702 * 120.00145 * 8 3 2 11 11 O 1.21343 * 120.00046 * 358.88367 * 10 8 3 12 12 C 1.49451 * 119.99766 * 178.88636 * 10 8 3 13 13 O 1.21345 * 120.00114 * 4.30149 * 12 10 8 14 14 N 1.34773 * 119.99671 * 184.30302 * 12 10 8 15 15 C 1.46507 * 119.99991 * 185.04744 * 14 12 10 16 16 C 1.52998 * 109.47287 * 184.87150 * 15 14 12 17 17 C 1.50699 * 115.55251 * 306.61036 * 16 15 14 18 18 H 1.08004 * 120.00175 * 95.30843 * 17 16 15 19 19 C 1.37879 * 119.99711 * 275.03756 * 17 16 15 20 20 N 1.31514 * 120.00115 * 355.35025 * 19 17 16 21 21 Si 1.86795 * 119.99965 * 175.35659 * 19 17 16 22 22 H 1.48504 * 109.47409 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47414 * 119.99498 * 21 19 17 24 24 H 1.48497 * 109.47217 * 239.99767 * 21 19 17 25 25 C 1.52997 * 117.49648 * 92.27564 * 16 15 14 26 26 C 1.52997 * 117.49897 * 160.93334 * 16 15 14 27 27 H 1.08999 * 109.46919 * 299.99986 * 1 2 3 28 28 H 1.08996 * 109.46816 * 60.00333 * 1 2 3 29 29 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 239.99110 * 2 1 3 31 31 H 1.09000 * 109.47260 * 119.99856 * 2 1 3 32 32 H 1.08996 * 109.47017 * 305.00389 * 5 3 2 33 33 H 1.09005 * 109.46770 * 64.99885 * 5 3 2 34 34 H 1.08993 * 109.47066 * 59.99726 * 7 6 5 35 35 H 1.09004 * 109.47090 * 180.02562 * 7 6 5 36 36 H 1.09005 * 109.46943 * 299.99880 * 7 6 5 37 37 H 1.09004 * 109.47190 * 262.51340 * 9 8 3 38 38 H 1.08995 * 109.47018 * 22.51393 * 9 8 3 39 39 H 1.09001 * 109.46828 * 142.51219 * 9 8 3 40 40 H 0.97005 * 120.00401 * 5.05031 * 14 12 10 41 41 H 1.09004 * 109.46771 * 64.87048 * 15 14 12 42 42 H 1.08996 * 109.47117 * 304.87414 * 15 14 12 43 43 H 0.96997 * 120.00305 * 184.99889 * 20 19 17 44 44 H 1.09003 * 117.50108 * 215.00298 * 25 16 15 45 45 H 1.09000 * 117.49858 * 0.02562 * 25 16 15 46 46 H 1.08998 * 117.49741 * 359.97438 * 26 16 15 47 47 H 1.09002 * 117.49898 * 144.97407 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5649 1.4442 0.1257 6 16 4.1574 3.1522 0.2743 7 6 5.9550 2.9503 0.4098 8 7 1.6525 2.0973 -1.2519 9 6 2.1140 1.5587 -2.5338 10 6 0.8714 3.1954 -1.2242 11 8 0.4726 3.6297 -0.1637 12 6 0.4966 3.8780 -2.4998 13 8 0.8297 3.4002 -3.5643 14 7 -0.2115 5.0244 -2.4677 15 6 -0.6740 5.6348 -3.7166 16 6 -1.3410 6.9776 -3.4116 17 6 -2.4400 6.9383 -2.3812 18 1 -2.2206 7.1670 -1.3487 19 6 -3.7266 6.6157 -2.7576 20 7 -4.0136 6.4320 -4.0278 21 14 -5.0620 6.4399 -1.4634 22 1 -4.4851 6.6947 -0.1189 23 1 -6.1441 7.4207 -1.7321 24 1 -5.6184 5.0638 -1.5100 25 6 -0.4630 8.2297 -3.4606 26 6 -1.4899 7.9708 -4.5658 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8571 0.8799 1.0112 33 1 4.0030 0.9834 -0.7597 34 1 6.3329 2.4520 -0.4829 35 1 6.4244 3.9294 0.5060 36 1 6.1878 2.3483 1.2881 37 1 2.9930 2.1117 -2.8649 38 1 2.3706 0.5062 -2.4143 39 1 1.3216 1.6576 -3.2757 40 1 -0.4148 5.4453 -1.6177 41 1 -1.3932 4.9734 -4.1998 42 1 0.1761 5.7938 -4.3800 43 1 -4.9316 6.2769 -4.3001 44 1 -0.6804 9.0250 -2.7475 45 1 0.5896 8.0968 -3.7105 46 1 -1.1123 7.6677 -5.5424 47 1 -2.3830 8.5954 -4.5802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326145630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:11 Heat of formation + Delta-G solvation = -41.662743 kcal Electronic energy + Delta-G solvation = -26833.282584 eV Core-core repulsion = 23143.659611 eV Total energy + Delta-G solvation = -3689.622974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.51583 -38.44252 -36.84240 -36.68146 -33.67669 -32.73978 -31.96256 -30.44452 -29.12495 -27.20103 -26.72396 -25.47157 -24.48334 -23.17654 -21.14631 -20.43886 -19.67487 -19.08365 -17.46856 -17.01540 -16.38490 -16.16286 -15.92494 -15.41133 -14.79566 -14.59839 -14.46858 -14.28073 -14.18953 -14.01283 -13.70610 -13.38500 -13.26093 -13.05113 -12.92508 -12.72874 -12.64724 -12.34252 -12.10910 -11.89610 -11.60114 -11.44219 -11.22060 -11.12511 -10.98180 -10.93382 -10.76410 -10.48414 -10.20896 -10.09662 -9.55158 -9.04967 -8.93536 -8.68600 -8.51566 -8.35114 -8.07679 -7.81310 -6.07538 -4.17162 1.44319 1.89652 2.40010 2.64591 3.27493 3.36783 3.41462 3.68561 3.93382 4.33276 4.37975 4.70125 4.76192 4.86193 4.90096 4.92551 4.96400 5.11214 5.14509 5.20815 5.30716 5.36782 5.43401 5.55010 5.60721 5.75043 5.78286 5.89033 6.00210 6.09146 6.17406 6.30577 6.45294 6.45455 6.51226 6.72330 6.81399 7.08919 7.11122 7.20947 7.33987 7.52648 7.82783 7.88779 8.26356 8.33646 8.63528 8.85673 9.50947 10.99453 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.003486 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.819898 B = 8030.333215 C = 8832.664356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.152 3.848 4 H 0.113 0.887 5 C -0.100 4.100 6 S -0.239 6.239 7 C -0.128 4.128 8 N -0.583 5.583 9 C 0.068 3.932 10 C 0.512 3.488 11 O -0.515 6.515 12 C 0.497 3.503 13 O -0.538 6.538 14 N -0.662 5.662 15 C 0.160 3.840 16 C 0.021 3.979 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.075 3.925 20 N -0.875 5.875 21 Si 0.889 3.111 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.415 0.585 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.951 -12.793 6.452 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.047 3.953 4 H 0.131 0.869 5 C -0.249 4.249 6 S -0.013 6.013 7 C -0.296 4.296 8 N -0.317 5.317 9 C -0.074 4.074 10 C 0.296 3.704 11 O -0.390 6.390 12 C 0.277 3.723 13 O -0.418 6.418 14 N -0.312 5.312 15 C 0.038 3.962 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.129 4.129 20 N -0.511 5.511 21 Si 0.716 3.284 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.247 4.247 26 C -0.179 4.179 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.127 0.873 40 H 0.252 0.748 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.232 -12.022 6.145 20.354 hybrid contribution -0.037 -1.062 0.899 1.392 sum 15.195 -13.084 7.044 21.253 Atomic orbital electron populations 1.21715 0.94570 1.01657 1.02842 1.21866 0.97327 0.94687 1.02728 1.20924 0.91059 0.94488 0.88834 0.86915 1.23890 0.99346 0.96522 1.05162 1.87524 1.05024 1.11839 1.96880 1.23393 0.95454 1.06333 1.04467 1.47579 1.49351 1.27351 1.07418 1.22316 1.02676 0.97558 0.84856 1.20428 0.78922 0.80974 0.90122 1.90739 1.52518 1.64036 1.31692 1.19872 0.80630 0.82867 0.88906 1.90594 1.55226 1.64526 1.31478 1.45884 1.50316 1.22106 1.12884 1.21118 0.96262 0.95720 0.83137 1.19025 0.95483 0.85157 0.98290 1.20411 0.91770 1.48106 0.93508 0.91914 1.24977 0.98532 0.94187 0.95229 1.69997 1.19055 1.47284 1.14734 0.86581 0.81793 0.77771 0.82216 1.19476 1.21033 1.20938 1.23064 0.94535 1.03218 1.03910 1.22461 0.98978 1.04546 0.91895 0.92289 0.92351 0.92485 0.91168 0.90612 0.89031 0.89672 0.90701 0.88120 0.90755 0.92404 0.92222 0.87255 0.74754 0.91061 0.93454 0.92945 0.90280 0.91632 0.91782 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.80 37.16 0.36 -1.19 16 2 C -0.13 -1.08 5.36 -26.73 -0.14 -1.22 16 3 C 0.15 1.67 2.02 -67.93 -0.14 1.53 16 4 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 5 C -0.10 -0.91 5.35 37.16 0.20 -0.71 16 6 S -0.24 -2.82 22.11 -107.50 -2.38 -5.19 16 7 C -0.13 -0.99 10.76 101.05 1.09 0.09 16 8 N -0.58 -7.88 1.92 -174.44 -0.34 -8.22 16 9 C 0.07 0.81 8.39 59.85 0.50 1.31 16 10 C 0.51 8.93 7.74 -11.58 -0.09 8.84 16 11 O -0.52 -10.02 15.82 5.50 0.09 -9.94 16 12 C 0.50 9.64 7.79 -11.59 -0.09 9.55 16 13 O -0.54 -10.68 13.12 5.50 0.07 -10.61 16 14 N -0.66 -13.82 5.39 -60.73 -0.33 -14.14 16 15 C 0.16 3.59 5.61 -4.04 -0.02 3.57 16 16 C 0.02 0.50 1.64 -155.66 -0.26 0.25 16 17 C -0.50 -13.02 8.02 -34.44 -0.28 -13.30 16 18 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 19 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 20 N -0.87 -24.06 12.65 55.43 0.70 -23.36 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.21 -4.46 9.92 -26.70 -0.26 -4.73 16 26 C -0.14 -3.21 9.18 -26.70 -0.24 -3.45 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 6.51 -51.93 -0.34 0.20 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.68 7.49 -51.92 -0.39 0.30 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 39 H 0.11 1.55 5.50 -51.93 -0.29 1.27 16 40 H 0.42 8.82 7.40 -40.82 -0.30 8.52 16 41 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 43 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -29.32 396.80 -8.55 -37.87 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.86 Total: 9.28 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.53 Total: 2.44 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.04 Total: -45.72 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.16 Total: -20.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.38 Total: -5.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.32 -8.55 -37.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.788 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds