Wall clock time and date at job start Tue Mar 31 2020 16:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 H 1.08994 * 109.47302 * 54.99431 * 3 2 1 5 5 C 1.53003 * 109.47385 * 175.00047 * 3 2 1 6 6 S 1.81393 * 109.47226 * 184.99625 * 5 3 2 7 7 C 1.81397 * 103.00111 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.46620 * 294.99764 * 3 2 1 9 9 C 1.46500 * 120.00254 * 299.99867 * 8 3 2 10 10 C 1.34786 * 119.99702 * 120.00145 * 8 3 2 11 11 O 1.21343 * 120.00046 * 358.88367 * 10 8 3 12 12 C 1.49451 * 119.99766 * 178.88636 * 10 8 3 13 13 O 1.21345 * 120.00114 * 4.30149 * 12 10 8 14 14 N 1.34773 * 119.99671 * 184.30302 * 12 10 8 15 15 C 1.46507 * 119.99991 * 185.04744 * 14 12 10 16 16 C 1.52998 * 109.47287 * 184.87150 * 15 14 12 17 17 C 1.50699 * 115.55251 * 306.61036 * 16 15 14 18 18 H 1.08004 * 120.00175 * 95.30843 * 17 16 15 19 19 C 1.37879 * 119.99711 * 275.03756 * 17 16 15 20 20 N 1.31514 * 120.00115 * 355.35025 * 19 17 16 21 21 Si 1.86795 * 119.99965 * 175.35659 * 19 17 16 22 22 H 1.48504 * 109.47409 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47414 * 119.99498 * 21 19 17 24 24 H 1.48497 * 109.47217 * 239.99767 * 21 19 17 25 25 C 1.52997 * 117.49648 * 92.27564 * 16 15 14 26 26 C 1.52997 * 117.49897 * 160.93334 * 16 15 14 27 27 H 1.08999 * 109.46919 * 299.99986 * 1 2 3 28 28 H 1.08996 * 109.46816 * 60.00333 * 1 2 3 29 29 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 239.99110 * 2 1 3 31 31 H 1.09000 * 109.47260 * 119.99856 * 2 1 3 32 32 H 1.08996 * 109.47017 * 305.00389 * 5 3 2 33 33 H 1.09005 * 109.46770 * 64.99885 * 5 3 2 34 34 H 1.08993 * 109.47066 * 59.99726 * 7 6 5 35 35 H 1.09004 * 109.47090 * 180.02562 * 7 6 5 36 36 H 1.09005 * 109.46943 * 299.99880 * 7 6 5 37 37 H 1.09004 * 109.47190 * 262.51340 * 9 8 3 38 38 H 1.08995 * 109.47018 * 22.51393 * 9 8 3 39 39 H 1.09001 * 109.46828 * 142.51219 * 9 8 3 40 40 H 0.97005 * 120.00401 * 5.05031 * 14 12 10 41 41 H 1.09004 * 109.46771 * 64.87048 * 15 14 12 42 42 H 1.08996 * 109.47117 * 304.87414 * 15 14 12 43 43 H 0.96997 * 120.00305 * 184.99889 * 20 19 17 44 44 H 1.09003 * 117.50108 * 215.00298 * 25 16 15 45 45 H 1.09000 * 117.49858 * 0.02562 * 25 16 15 46 46 H 1.08998 * 117.49741 * 359.97438 * 26 16 15 47 47 H 1.09002 * 117.49898 * 144.97407 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5649 1.4442 0.1257 6 16 4.1574 3.1522 0.2743 7 6 5.9550 2.9503 0.4098 8 7 1.6525 2.0973 -1.2519 9 6 2.1140 1.5587 -2.5338 10 6 0.8714 3.1954 -1.2242 11 8 0.4726 3.6297 -0.1637 12 6 0.4966 3.8780 -2.4998 13 8 0.8297 3.4002 -3.5643 14 7 -0.2115 5.0244 -2.4677 15 6 -0.6740 5.6348 -3.7166 16 6 -1.3410 6.9776 -3.4116 17 6 -2.4400 6.9383 -2.3812 18 1 -2.2206 7.1670 -1.3487 19 6 -3.7266 6.6157 -2.7576 20 7 -4.0136 6.4320 -4.0278 21 14 -5.0620 6.4399 -1.4634 22 1 -4.4851 6.6947 -0.1189 23 1 -6.1441 7.4207 -1.7321 24 1 -5.6184 5.0638 -1.5100 25 6 -0.4630 8.2297 -3.4606 26 6 -1.4899 7.9708 -4.5658 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8571 0.8799 1.0112 33 1 4.0030 0.9834 -0.7597 34 1 6.3329 2.4520 -0.4829 35 1 6.4244 3.9294 0.5060 36 1 6.1878 2.3483 1.2881 37 1 2.9930 2.1117 -2.8649 38 1 2.3706 0.5062 -2.4143 39 1 1.3216 1.6576 -3.2757 40 1 -0.4148 5.4453 -1.6177 41 1 -1.3932 4.9734 -4.1998 42 1 0.1761 5.7938 -4.3800 43 1 -4.9316 6.2769 -4.3001 44 1 -0.6804 9.0250 -2.7475 45 1 0.5896 8.0968 -3.7105 46 1 -1.1123 7.6677 -5.5424 47 1 -2.3830 8.5954 -4.5802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326145630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:09 Heat of formation + Delta-G solvation = -58.289245 kcal Electronic energy + Delta-G solvation = -26834.003564 eV Core-core repulsion = 23143.659611 eV Total energy + Delta-G solvation = -3690.343953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86802 -39.88779 -38.47378 -38.01088 -35.17729 -34.00001 -33.87875 -31.23277 -29.74278 -28.78847 -27.90169 -27.40751 -25.61736 -24.28335 -22.91864 -21.66479 -21.36936 -20.45849 -18.90558 -18.28541 -17.95182 -17.33754 -17.18999 -16.83436 -16.65334 -16.01138 -15.89378 -15.46679 -15.10519 -14.99055 -14.88452 -14.56469 -14.49945 -14.31591 -13.97047 -13.73257 -13.68031 -13.58787 -13.53575 -13.40363 -12.95508 -12.93739 -12.87539 -12.36342 -12.33870 -12.23685 -12.01678 -12.00483 -11.72089 -11.39999 -10.97651 -10.85658 -10.49162 -10.40173 -10.11955 -9.92845 -9.73698 -8.68950 -8.11719 -6.25102 0.44108 0.72119 1.37275 1.38180 1.43136 1.52585 1.71160 2.21857 2.40648 2.58697 3.15633 3.35876 3.52751 3.60242 3.96826 3.98275 4.18955 4.20638 4.29114 4.34757 4.34987 4.46843 4.50262 4.51405 4.64296 4.66804 4.71560 4.72889 4.87050 4.88048 4.91513 5.00727 5.03061 5.03797 5.15712 5.27275 5.34561 5.37021 5.47166 5.56405 5.68970 5.76419 5.97145 6.35097 6.40758 6.78865 6.82505 7.05149 7.44721 8.95010 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.003486 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.819898 B = 8030.333215 C = 8832.664356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.147 3.853 4 H 0.087 0.913 5 C -0.077 4.077 6 S -0.334 6.334 7 C -0.105 4.105 8 N -0.567 5.567 9 C 0.068 3.932 10 C 0.511 3.489 11 O -0.545 6.545 12 C 0.494 3.506 13 O -0.544 6.544 14 N -0.671 5.671 15 C 0.176 3.824 16 C -0.003 4.003 17 C -0.507 4.507 18 H 0.056 0.944 19 C 0.032 3.968 20 N -0.901 5.901 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.286 1.286 25 C -0.184 4.184 26 C -0.144 4.144 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.412 0.588 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.175 -14.902 7.302 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.043 3.957 4 H 0.105 0.895 5 C -0.226 4.226 6 S -0.109 6.109 7 C -0.274 4.274 8 N -0.300 5.300 9 C -0.073 4.073 10 C 0.293 3.707 11 O -0.422 6.422 12 C 0.275 3.725 13 O -0.424 6.424 14 N -0.320 5.320 15 C 0.053 3.947 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.074 0.926 19 C -0.169 4.169 20 N -0.538 5.538 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.212 1.212 25 C -0.221 4.221 26 C -0.182 4.182 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.249 0.751 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.493 -14.167 6.992 23.571 hybrid contribution -0.643 -0.470 0.634 1.018 sum 16.850 -14.637 7.626 23.586 Atomic orbital electron populations 1.21721 0.96258 1.02216 1.00716 1.21874 0.95677 0.92922 1.05178 1.21173 0.92696 0.95390 0.86442 0.89515 1.23839 0.97144 0.94229 1.07387 1.87910 1.09924 1.15834 1.97207 1.23374 0.91132 1.06952 1.05899 1.47666 1.47350 1.25722 1.09227 1.22343 1.01589 0.99910 0.83489 1.20041 0.79899 0.82060 0.88651 1.90724 1.54229 1.65256 1.32031 1.20337 0.79911 0.82343 0.89886 1.90596 1.55236 1.64456 1.32113 1.45844 1.51148 1.22940 1.12077 1.20775 0.95644 0.94507 0.83782 1.19083 0.96276 0.86465 0.98546 1.20628 0.92643 1.47421 0.93746 0.92633 1.25586 1.00386 0.94274 0.96688 1.70084 1.19291 1.48442 1.16004 0.85744 0.79684 0.77427 0.80271 1.19293 1.20475 1.21243 1.23054 0.95243 1.01383 1.02467 1.22376 0.98954 1.04143 0.92704 0.93771 0.95183 0.90548 0.89165 0.87533 0.86146 0.87748 0.89412 0.88028 0.88956 0.92355 0.88108 0.89596 0.75135 0.94160 0.92516 0.93057 0.90098 0.89304 0.90563 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.80 71.98 0.71 -2.21 16 2 C -0.12 -1.60 5.36 30.59 0.16 -1.44 16 3 C 0.15 2.94 2.02 44.99 0.09 3.03 16 4 H 0.09 2.28 6.90 -2.39 -0.02 2.26 16 5 C -0.08 -1.16 5.35 71.98 0.39 -0.77 16 6 S -0.33 -7.48 22.11 -56.49 -1.25 -8.73 16 7 C -0.11 -1.36 10.76 113.37 1.22 -0.14 16 8 N -0.57 -14.81 1.92 -824.17 -1.58 -16.40 16 9 C 0.07 1.50 8.39 127.77 1.07 2.57 16 10 C 0.51 18.13 7.74 87.27 0.68 18.80 16 11 O -0.54 -21.95 15.82 -3.22 -0.05 -22.00 16 12 C 0.49 19.60 7.79 87.27 0.68 20.28 16 13 O -0.54 -21.86 13.12 -3.23 -0.04 -21.90 16 14 N -0.67 -28.77 5.39 -464.41 -2.50 -31.27 16 15 C 0.18 8.06 5.61 86.38 0.48 8.55 16 16 C 0.00 -0.14 1.64 -52.93 -0.09 -0.23 16 17 C -0.51 -26.86 8.02 25.60 0.21 -26.66 16 18 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 19 C 0.03 1.73 5.43 84.66 0.46 2.19 16 20 N -0.90 -50.65 12.65 21.45 0.27 -50.38 16 21 Si 0.94 43.67 29.54 68.60 2.03 45.69 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 C -0.18 -7.69 9.92 30.62 0.30 -7.39 16 26 C -0.14 -6.58 9.18 30.62 0.28 -6.30 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.03 0.73 7.75 -2.39 -0.02 0.71 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.09 0.92 6.51 -2.39 -0.02 0.91 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.20 7.49 -2.39 -0.02 1.18 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.10 1.39 6.35 -2.39 -0.02 1.37 16 39 H 0.09 2.38 5.50 -2.39 -0.01 2.36 16 40 H 0.41 18.15 7.40 -92.70 -0.69 17.47 16 41 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 43 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 44 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -66.07 396.80 3.78 -62.29 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.27 Total: 32.41 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.64 Total: 10.29 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -3.82 Total: -98.05 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.09 Total: -43.90 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.25 Total: -8.73 kcal Total: -66.07 3.78 -62.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.996 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds