Wall clock time and date at job start Tue Mar 31 2020 16:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 119.99922 * 2 1 4 4 N 1.46503 * 109.47442 * 125.00177 * 3 2 1 5 5 C 1.46495 * 119.99671 * 275.02464 * 4 3 2 6 6 C 1.50701 * 109.47110 * 269.99284 * 5 4 3 7 7 H 1.08006 * 119.99546 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00393 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99538 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00118 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47106 * 60.00395 * 10 8 6 12 12 H 1.48502 * 109.47030 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47192 * 300.00302 * 10 8 6 14 14 C 1.34776 * 120.00197 * 95.01558 * 4 3 2 15 15 O 1.21592 * 120.00221 * 185.53482 * 14 4 3 16 16 C 1.47525 * 119.99732 * 5.53996 * 14 4 3 17 17 C 1.39690 * 120.20059 * 54.95892 * 16 14 4 18 18 C 1.37797 * 119.91664 * 180.29763 * 17 16 14 19 19 C 1.38554 * 120.33324 * 359.67711 * 18 17 16 20 20 C 1.38025 * 120.40667 * 359.97438 * 19 18 17 21 21 C 1.38845 * 120.06791 * 0.02574 * 20 19 18 22 22 N 1.39294 * 120.16448 * 180.02562 * 21 20 19 23 23 C 1.46767 * 124.34847 * 89.99724 * 22 21 20 24 24 C 1.54480 * 105.47213 * 197.01380 * 23 22 21 25 25 C 1.54635 * 101.76608 * 334.58952 * 24 23 22 26 26 C 1.34420 * 124.34710 * 269.99514 * 22 21 20 27 27 O 1.21269 * 124.94596 * 359.63427 * 26 22 21 28 28 H 1.08005 * 120.00155 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00226 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00155 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47222 * 4.99837 * 3 2 1 32 32 H 1.09005 * 109.47377 * 244.99769 * 3 2 1 33 33 H 1.08999 * 109.47465 * 29.99490 * 5 4 3 34 34 H 1.09008 * 109.47150 * 149.99760 * 5 4 3 35 35 H 0.97003 * 119.99366 * 180.02562 * 9 8 6 36 36 H 1.07996 * 120.03812 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.82977 * 179.70299 * 18 17 16 38 38 H 1.08003 * 119.80257 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.96583 * 179.97438 * 20 19 18 40 40 H 1.08996 * 110.24386 * 78.01804 * 23 22 21 41 41 H 1.08990 * 110.24651 * 316.01661 * 23 22 21 42 42 H 1.09006 * 110.96900 * 92.70334 * 24 23 22 43 43 H 1.08991 * 110.97003 * 216.46620 * 24 23 22 44 44 H 1.09000 * 110.48772 * 143.47723 * 25 24 23 45 45 H 1.09004 * 110.48244 * 265.98183 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5283 1.7617 2.4523 6 6 2.7133 3.2509 2.5902 7 1 3.1351 3.8204 1.7751 8 6 2.3443 3.8865 3.7568 9 7 1.8311 3.1929 4.7494 10 14 2.5730 5.7325 3.9273 11 1 1.7877 6.4278 2.8761 12 1 2.1025 6.1679 5.2668 13 1 4.0113 6.0693 3.7748 14 6 4.2777 0.9612 0.9571 15 8 5.0243 0.8867 1.9139 16 6 4.7773 0.6459 -0.3947 17 6 4.6444 1.5767 -1.4278 18 6 5.1076 1.2736 -2.6897 19 6 5.7114 0.0517 -2.9387 20 6 5.8562 -0.8752 -1.9263 21 6 5.3956 -0.5873 -0.6485 22 7 5.5412 -1.5210 0.3749 23 6 6.7058 -1.5997 1.2646 24 6 6.6346 -2.9997 1.9138 25 6 5.1217 -3.3088 1.8316 26 6 4.6330 -2.4657 0.6745 27 8 3.5762 -2.6202 0.1002 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.4724 1.5149 2.5635 34 1 3.1041 1.2510 3.2243 35 1 1.5712 3.6401 5.5700 36 1 4.1745 2.5305 -1.2390 37 1 4.9998 1.9924 -3.4886 38 1 6.0718 -0.1768 -3.9309 39 1 6.3276 -1.8256 -2.1284 40 1 6.6487 -0.8257 2.0299 41 1 7.6265 -1.4965 0.6906 42 1 7.2126 -3.7251 1.3411 43 1 6.9703 -2.9665 2.9502 44 1 4.9591 -4.3672 1.6281 45 1 4.6222 -3.0179 2.7558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326339626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:31 Heat of formation + Delta-G solvation = -27.321428 kcal Electronic energy + Delta-G solvation = -29089.482349 eV Core-core repulsion = 25265.037310 eV Total energy + Delta-G solvation = -3824.445039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.13596 -40.77824 -39.21395 -37.58942 -37.20997 -35.17224 -34.09077 -33.78166 -32.43745 -30.26124 -29.44227 -28.55402 -27.09139 -25.73615 -24.07797 -23.87349 -22.75321 -21.37737 -21.01855 -20.11598 -18.68617 -18.58172 -18.18428 -17.73469 -17.52966 -16.60969 -16.46333 -16.22080 -16.08841 -15.92698 -15.42855 -15.08146 -14.78704 -14.67745 -14.53344 -14.28532 -14.19104 -13.91870 -13.67245 -13.60244 -13.34372 -13.05794 -12.93022 -12.86098 -12.61376 -12.40887 -12.39106 -12.30694 -12.24987 -11.92613 -11.74859 -11.08742 -10.79511 -10.68257 -10.48049 -9.98466 -9.91220 -9.82807 -9.53104 -8.25770 -6.42048 -0.06793 0.20088 1.21136 1.34889 1.39404 1.41199 1.47018 1.76220 1.94416 2.26577 2.40328 2.65470 3.03542 3.40943 3.52114 3.61616 3.84319 3.96719 3.98675 4.08263 4.11291 4.17024 4.32352 4.35695 4.38532 4.40066 4.60883 4.68368 4.70881 4.76142 4.81344 4.93810 4.95767 4.99590 5.12219 5.17337 5.25304 5.33308 5.38915 5.43975 5.55861 5.65942 5.68078 5.85524 5.89971 5.99389 6.01302 6.58596 6.66822 7.07012 7.18111 7.33776 8.81852 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.004587 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.783061 B = 6102.533645 C = 6490.362913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.187 4.187 3 C 0.131 3.869 4 N -0.590 5.590 5 C 0.269 3.731 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.972 3.028 11 H -0.259 1.259 12 H -0.277 1.277 13 H -0.275 1.275 14 C 0.547 3.453 15 O -0.578 6.578 16 C -0.139 4.139 17 C -0.098 4.098 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.116 4.116 21 C 0.156 3.844 22 N -0.576 5.576 23 C 0.096 3.904 24 C -0.110 4.110 25 C -0.150 4.150 26 C 0.504 3.496 27 O -0.568 6.568 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.015 0.985 34 H -0.004 1.004 35 H 0.268 0.732 36 H 0.131 0.869 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.149 0.851 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -10.362 -16.278 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.009 3.991 4 N -0.319 5.319 5 C 0.149 3.851 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.795 3.205 11 H -0.183 1.183 12 H -0.202 1.202 13 H -0.201 1.201 14 C 0.336 3.664 15 O -0.459 6.459 16 C -0.143 4.143 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.101 4.101 20 C -0.135 4.135 21 C 0.066 3.934 22 N -0.305 5.305 23 C -0.024 4.024 24 C -0.148 4.148 25 C -0.190 4.190 26 C 0.295 3.705 27 O -0.447 6.447 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.033 0.967 34 H 0.014 0.986 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.188 0.812 38 H 0.192 0.808 39 H 0.167 0.833 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.339 -10.419 -15.894 21.175 hybrid contribution -0.360 1.025 1.066 1.522 sum 8.979 -9.394 -14.828 19.716 Atomic orbital electron populations 1.23992 0.95017 1.02897 0.98418 1.23354 0.97161 0.98303 1.01803 1.20954 0.92701 0.95829 0.89616 1.48105 1.08973 1.63153 1.11665 1.18678 0.93221 0.94156 0.79084 1.21612 1.42475 0.93141 1.01120 0.92550 1.25902 0.94264 1.03966 0.94843 1.70072 1.42788 1.38147 1.05670 0.85409 0.78621 0.78520 0.77914 1.18339 1.20230 1.20060 1.18730 0.82096 0.76457 0.89110 1.90655 1.56982 1.54786 1.43459 1.20382 1.03108 0.97179 0.93658 1.21378 0.99185 0.98455 0.92720 1.21554 0.96645 0.98177 0.95834 1.21655 0.96252 0.92178 1.00058 1.21531 1.00056 1.01424 0.90481 1.17593 0.98920 0.87710 0.89221 1.45545 1.22198 1.30432 1.32363 1.22449 0.87522 0.99518 0.92957 1.22633 0.93788 0.94512 1.03831 1.22364 0.98721 1.01660 0.96233 1.21835 0.82687 0.81241 0.84781 1.90641 1.24056 1.72537 1.57433 0.87239 0.87107 0.88840 0.89856 0.87743 0.96699 0.98637 0.92300 0.85084 0.81236 0.80779 0.83290 0.92599 0.88016 0.86716 0.87322 0.85528 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.36 14.32 67.79 0.97 -4.39 16 2 C -0.19 -7.11 9.84 25.66 0.25 -6.86 16 3 C 0.13 5.12 5.67 85.63 0.49 5.61 16 4 N -0.59 -28.56 2.44 -834.28 -2.04 -30.59 16 5 C 0.27 15.64 5.22 85.63 0.45 16.09 16 6 C -0.55 -32.40 9.39 25.60 0.24 -32.15 16 7 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 10 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.55 25.94 6.75 86.69 0.59 26.53 16 15 O -0.58 -31.42 14.68 -4.00 -0.06 -31.48 16 16 C -0.14 -5.09 4.92 -19.98 -0.10 -5.19 16 17 C -0.10 -2.82 7.48 22.52 0.17 -2.65 16 18 C -0.10 -2.00 10.02 22.24 0.22 -1.78 16 19 C -0.08 -1.42 10.03 22.29 0.22 -1.20 16 20 C -0.12 -2.65 9.96 22.36 0.22 -2.42 16 21 C 0.16 5.02 5.36 38.60 0.21 5.23 16 22 N -0.58 -18.39 2.10 -627.02 -1.32 -19.71 16 23 C 0.10 2.48 7.04 86.83 0.61 3.09 16 24 C -0.11 -1.93 7.18 31.65 0.23 -1.70 16 25 C -0.15 -3.60 6.86 30.59 0.21 -3.39 16 26 C 0.50 17.18 7.98 87.90 0.70 17.89 16 27 O -0.57 -23.41 16.44 -2.99 -0.05 -23.46 16 28 H 0.11 3.24 7.84 -2.91 -0.02 3.22 16 29 H 0.11 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.09 4.02 6.75 -2.91 -0.02 4.00 16 31 H 0.08 3.21 7.76 -2.39 -0.02 3.19 16 32 H 0.10 3.53 4.41 -2.38 -0.01 3.52 16 33 H 0.01 0.90 8.07 -2.39 -0.02 0.88 16 34 H 0.00 -0.30 7.35 -2.38 -0.02 -0.31 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.13 3.75 7.57 -2.91 -0.02 3.73 16 37 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.06 1.87 6.73 -2.39 -0.02 1.86 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -84.78 378.82 5.98 -78.80 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.99 Total: 22.47 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.14 Total: 13.72 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.07 Total: -107.37 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -0.11 Total: -54.93 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -84.78 5.98 -78.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326339626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.475 kcal (2) G-P(sol) polarization free energy of solvation -84.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds