Wall clock time and date at job start Tue Mar 31 2020 15:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46988 * 2 1 4 4 C 1.52999 * 109.46716 * 119.99339 * 2 1 3 5 5 S 1.81403 * 109.46950 * 174.99983 * 4 2 1 6 6 C 1.81394 * 103.00251 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47339 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47132 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99683 * 180.02562 * 8 7 6 10 10 O 1.21351 * 120.00295 * 0.02562 * 9 8 7 11 11 C 1.49448 * 119.99749 * 180.02562 * 9 8 7 12 12 O 1.21352 * 120.00058 * 354.98777 * 11 9 8 13 13 N 1.34783 * 120.00336 * 175.26827 * 11 9 8 14 14 C 1.46494 * 120.00419 * 185.50960 * 13 11 9 15 15 C 1.52998 * 109.47023 * 183.69145 * 14 13 11 16 16 C 1.50703 * 115.55013 * 306.40857 * 15 14 13 17 17 H 1.07994 * 119.99536 * 145.11396 * 16 15 14 18 18 C 1.37871 * 119.99632 * 325.11414 * 16 15 14 19 19 N 1.31516 * 120.00618 * 349.45167 * 18 16 15 20 20 Si 1.86804 * 119.99653 * 169.45353 * 18 16 15 21 21 H 1.48501 * 109.47265 * 60.00070 * 20 18 16 22 22 H 1.48501 * 109.47498 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47167 * 299.99998 * 20 18 16 24 24 C 1.53010 * 117.49711 * 160.74272 * 15 14 13 25 25 C 1.53001 * 117.50133 * 92.08533 * 15 14 13 26 26 H 1.09000 * 109.47322 * 300.00158 * 1 2 3 27 27 H 1.08997 * 109.47068 * 60.00854 * 1 2 3 28 28 H 1.09007 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47141 * 239.99386 * 2 1 3 30 30 H 1.08998 * 109.47681 * 59.99175 * 3 2 1 31 31 H 1.08995 * 109.47380 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47135 * 299.99796 * 3 2 1 33 33 H 1.08999 * 109.47256 * 55.00608 * 4 2 1 34 34 H 1.08997 * 109.47689 * 295.00164 * 4 2 1 35 35 H 1.09005 * 109.46876 * 60.00290 * 6 5 4 36 36 H 1.08997 * 109.47575 * 300.00717 * 6 5 4 37 37 H 1.09005 * 109.46917 * 60.00294 * 7 6 5 38 38 H 1.08994 * 109.47225 * 300.00336 * 7 6 5 39 39 H 0.97000 * 119.99926 * 0.02562 * 8 7 6 40 40 H 0.97004 * 119.99169 * 5.49828 * 13 11 9 41 41 H 1.09005 * 109.46858 * 303.68883 * 14 13 11 42 42 H 1.09000 * 109.47375 * 63.68800 * 14 13 11 43 43 H 0.96996 * 120.00080 * 185.03698 * 19 18 16 44 44 H 1.08995 * 117.49759 * 359.97438 * 24 15 14 45 45 H 1.08997 * 117.49853 * 145.01978 * 24 15 14 46 46 H 1.08996 * 117.49778 * 214.97964 * 25 15 14 47 47 H 1.09000 * 117.49938 * 359.96950 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 16 3.8478 -0.8513 1.1768 6 6 4.2567 -1.7186 2.7166 7 6 5.7720 -1.9090 2.8079 8 7 6.1021 -2.6100 4.0512 9 6 7.3872 -2.8885 4.3470 10 8 8.2709 -2.5582 3.5836 11 6 7.7239 -3.6041 5.6150 12 8 6.8516 -3.8537 6.4209 13 7 8.9974 -3.9673 5.8662 14 6 9.3095 -4.7733 7.0490 15 6 10.8239 -4.9669 7.1491 16 6 11.4905 -5.5256 5.9184 17 1 12.4844 -5.2010 5.6482 18 6 10.8313 -6.4512 5.1375 19 7 9.7174 -7.0016 5.5689 20 14 11.5203 -6.9236 3.4667 21 1 12.8786 -7.4995 3.6362 22 1 10.6323 -7.9301 2.8315 23 1 11.5983 -5.7171 2.6044 24 6 11.3958 -5.3738 8.5087 25 6 11.6123 -3.9533 7.9810 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.7666 -2.6923 2.7263 36 1 3.9128 -1.1304 3.5673 37 1 6.2617 -0.9352 2.7984 38 1 6.1163 -2.4971 1.9572 39 1 5.3958 -2.8737 4.6615 40 1 9.7071 -3.6950 5.2637 41 1 8.9487 -4.2629 7.9420 42 1 8.8237 -5.7454 6.9649 43 1 9.2929 -7.7052 5.0536 44 1 10.6932 -5.5032 9.3318 45 1 12.2543 -6.0453 8.5129 46 1 12.6132 -3.6909 7.6383 47 1 11.0522 -3.1483 8.4567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327367255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:52 Heat of formation + Delta-G solvation = -82.831460 kcal Electronic energy + Delta-G solvation = -25058.374054 eV Core-core repulsion = 21366.965870 eV Total energy + Delta-G solvation = -3691.408183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61211 -39.69664 -38.44797 -37.09803 -36.76406 -34.85509 -34.15286 -31.91061 -28.62502 -28.36994 -28.02322 -27.49864 -25.51219 -23.47021 -22.92768 -21.40768 -21.23290 -21.09247 -19.62902 -18.12383 -17.97005 -17.26492 -17.18485 -16.75719 -16.70911 -16.24499 -16.16135 -15.93489 -15.44219 -15.31400 -15.04669 -14.71876 -14.59173 -14.34400 -13.72600 -13.62326 -13.43745 -13.42314 -13.14525 -12.94753 -12.88969 -12.79142 -12.72526 -12.65734 -12.32792 -12.05472 -12.02866 -11.87426 -11.69923 -11.44961 -11.10353 -10.91955 -10.71388 -10.60968 -10.42698 -10.17122 -9.83428 -8.69099 -8.06988 -6.20467 0.39765 0.42863 1.40178 1.45472 1.47426 1.49758 1.62528 2.21889 2.39193 2.79050 3.04703 3.51404 3.56403 3.68471 3.75961 3.80348 3.87308 4.16143 4.21870 4.29997 4.49327 4.49860 4.59379 4.61779 4.69815 4.70632 4.70993 4.75756 4.81592 4.97428 5.00011 5.02864 5.03611 5.07041 5.22952 5.26816 5.39764 5.41503 5.46109 5.55287 5.58870 5.88630 5.97209 6.34589 6.50123 6.75457 6.83452 7.07967 7.42125 8.88003 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.002127 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.404051 B =13161.393790 C =13867.190755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.073 4.073 5 S -0.274 6.274 6 C -0.094 4.094 7 C 0.137 3.863 8 N -0.686 5.686 9 C 0.513 3.487 10 O -0.543 6.543 11 C 0.494 3.506 12 O -0.561 6.561 13 N -0.655 5.655 14 C 0.170 3.830 15 C 0.001 3.999 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.039 3.961 19 N -0.892 5.892 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.274 1.274 24 C -0.190 4.190 25 C -0.188 4.188 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.421 0.579 40 H 0.410 0.590 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.261 0.739 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.382 13.392 -8.115 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.207 4.207 4 C -0.221 4.221 5 S -0.048 6.048 6 C -0.243 4.243 7 C 0.013 3.987 8 N -0.341 5.341 9 C 0.293 3.707 10 O -0.420 6.420 11 C 0.274 3.726 12 O -0.442 6.442 13 N -0.303 5.303 14 C 0.047 3.953 15 C 0.001 3.999 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.163 4.163 19 N -0.529 5.529 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.228 4.228 25 C -0.225 4.225 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.259 0.741 40 H 0.246 0.754 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.830 13.687 -8.966 24.199 hybrid contribution -0.131 -1.114 0.221 1.144 sum -17.961 12.572 -8.745 23.603 Atomic orbital electron populations 1.21821 0.92855 1.02491 1.02776 1.20903 0.96827 0.96339 0.95928 1.21901 1.01148 0.95294 1.02384 1.23613 0.90840 1.04694 1.02946 1.87137 1.10949 1.76745 1.29936 1.23425 0.97168 1.04534 0.99127 1.21077 0.94210 0.97749 0.85640 1.45605 1.07033 1.57722 1.23754 1.20173 0.84030 0.79950 0.86506 1.90751 1.47940 1.52723 1.50616 1.20137 0.83915 0.81329 0.87228 1.90660 1.47709 1.57372 1.48429 1.45698 1.07518 1.49600 1.27466 1.20933 0.95645 0.94764 0.83953 1.19259 0.90466 0.99006 0.91200 1.20651 1.01510 1.24687 1.07507 0.92475 1.25486 0.94891 0.95776 1.00134 1.69939 1.19171 1.24723 1.39091 0.85896 0.78420 0.77953 0.81186 1.19632 1.21427 1.19943 1.22933 1.03251 0.97522 0.99097 1.22983 1.01564 0.91998 1.05963 0.91921 0.91524 0.92084 0.91031 0.92097 0.92918 0.91875 0.89121 0.88988 0.87995 0.87522 0.90384 0.91105 0.74069 0.75373 0.94067 0.89679 0.92977 0.90067 0.90502 0.89915 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.19 71.98 0.66 -0.40 16 2 C -0.08 -0.86 2.92 -10.79 -0.03 -0.89 16 3 C -0.15 -1.70 9.02 71.98 0.65 -1.05 16 4 C -0.07 -0.83 5.38 71.98 0.39 -0.44 16 5 S -0.27 -4.66 20.55 -56.49 -1.16 -5.82 16 6 C -0.09 -1.46 6.05 71.98 0.44 -1.03 16 7 C 0.14 3.05 5.68 86.38 0.49 3.54 16 8 N -0.69 -18.23 5.55 -464.41 -2.58 -20.81 16 9 C 0.51 18.48 7.89 87.27 0.69 19.16 16 10 O -0.54 -22.20 16.49 -3.25 -0.05 -22.26 16 11 C 0.49 20.28 7.88 87.27 0.69 20.97 16 12 O -0.56 -24.06 16.48 -3.25 -0.05 -24.11 16 13 N -0.66 -28.96 5.27 -464.41 -2.45 -31.41 16 14 C 0.17 7.89 4.75 86.38 0.41 8.30 16 15 C 0.00 0.06 2.00 -52.92 -0.11 -0.04 16 16 C -0.51 -25.88 8.27 25.60 0.21 -25.67 16 17 H 0.06 2.93 7.84 -2.91 -0.02 2.90 16 18 C 0.04 2.03 5.13 84.65 0.43 2.46 16 19 N -0.89 -48.01 10.75 21.45 0.23 -47.78 16 20 Si 0.94 42.40 29.55 68.60 2.03 44.43 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C -0.19 -7.97 9.96 30.62 0.30 -7.66 16 25 C -0.19 -7.47 9.92 30.62 0.30 -7.16 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.76 7.13 -2.39 -0.02 0.74 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.42 9.65 7.95 -92.71 -0.74 8.91 16 40 H 0.41 18.62 7.41 -92.70 -0.69 17.93 16 41 H 0.04 1.82 8.06 -2.38 -0.02 1.80 16 42 H 0.09 4.49 6.04 -2.39 -0.01 4.48 16 43 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 44 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -60.20 403.01 1.04 -59.17 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.46 Total: 38.50 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.53 Total: 10.10 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -4.79 Total: -100.00 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.11 Total: -46.37 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.16 Total: -5.82 kcal Total: -60.20 1.04 -59.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327367255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.664 kcal (2) G-P(sol) polarization free energy of solvation -60.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds