Wall clock time and date at job start Tue Mar 31 2020 16:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17411 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47153 * 55.87847 * 3 2 1 5 5 C 1.48529 * 110.99927 * 287.39684 * 4 3 2 6 6 C 1.55101 * 103.28311 * 200.33291 * 5 4 3 7 7 C 1.54594 * 102.84406 * 37.30508 * 6 5 4 8 8 C 1.47901 * 110.99724 * 169.99921 * 4 3 2 9 9 H 1.08997 * 110.08058 * 26.40576 * 8 4 3 10 10 C 1.50700 * 109.91753 * 265.19751 * 8 4 3 11 11 O 1.21274 * 119.99865 * 0.96078 * 10 8 4 12 12 N 1.34777 * 119.99715 * 180.96130 * 10 8 4 13 13 C 1.46508 * 119.99636 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.46464 * 179.97438 * 13 12 10 15 15 C 1.38326 * 119.96854 * 90.00461 * 14 13 12 16 16 C 1.38272 * 120.14270 * 179.97438 * 15 14 13 17 17 C 1.38132 * 120.06535 * 359.97358 * 16 15 14 18 18 C 1.38854 * 119.93210 * 0.02562 * 17 16 15 19 19 O 1.35752 * 120.06961 * 180.02562 * 18 17 16 20 20 C 1.34832 * 116.99604 * 354.46093 * 19 18 17 21 21 H 1.07998 * 120.00524 * 5.05678 * 20 19 18 22 22 C 1.38661 * 119.99714 * 185.05943 * 20 19 18 23 23 N 1.31555 * 119.99844 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46816 * 59.99879 * 24 22 20 26 26 H 1.48496 * 109.47159 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47301 * 300.00361 * 24 22 20 28 28 C 1.38083 * 119.96321 * 269.71912 * 14 13 12 29 29 H 4.40893 * 5.52069 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47247 * 295.88118 * 3 2 1 31 31 H 1.08997 * 109.47080 * 175.87884 * 3 2 1 32 32 H 1.08997 * 110.67275 * 318.71090 * 5 4 3 33 33 H 1.09006 * 110.66883 * 81.84679 * 5 4 3 34 34 H 1.09011 * 110.70943 * 278.99682 * 6 5 4 35 35 H 1.08998 * 110.81438 * 155.66885 * 6 5 4 36 36 H 1.09006 * 110.31002 * 219.18329 * 7 6 5 37 37 H 1.09003 * 110.30552 * 97.12391 * 7 6 5 38 38 H 0.96993 * 120.00258 * 359.97438 * 12 10 8 39 39 H 1.08994 * 109.47003 * 299.99427 * 13 12 10 40 40 H 1.08996 * 109.47015 * 59.99755 * 13 12 10 41 41 H 1.07999 * 119.92616 * 0.02562 * 15 14 13 42 42 H 1.07994 * 119.96904 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.02779 * 180.02562 * 17 16 15 44 44 H 0.97002 * 120.00165 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.03494 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1361 -0.7761 -1.1466 5 6 2.9233 -2.2306 -0.9342 6 6 3.9277 -2.8851 -1.9182 7 6 5.1499 -1.9417 -1.8399 8 6 4.5947 -0.6029 -1.3195 9 1 5.0579 -0.3550 -0.3645 10 6 4.8668 0.4898 -2.3210 11 8 3.9436 1.0865 -2.8332 12 7 6.1362 0.8039 -2.6473 13 6 6.4008 1.8666 -3.6205 14 6 7.8886 2.0186 -3.8060 15 6 8.5424 1.2832 -4.7781 16 6 9.9073 1.4202 -4.9518 17 6 10.6221 2.2931 -4.1548 18 6 9.9687 3.0328 -3.1781 19 8 10.6684 3.8918 -2.3936 20 6 12.0093 3.8960 -2.5350 21 1 12.4732 3.2958 -3.3037 22 6 12.7927 4.6710 -1.6934 23 7 12.2277 5.4017 -0.7566 24 14 14.6504 4.6764 -1.8888 25 1 15.0036 5.1551 -3.2495 26 1 15.2522 5.5786 -0.8744 27 1 15.1723 3.2993 -1.6976 28 6 8.5968 2.8964 -3.0093 29 1 -1.0499 0.0001 -0.0002 30 1 3.0096 -0.4478 0.9246 31 1 3.0089 1.0258 -0.0739 32 1 3.1577 -2.5077 0.0936 33 1 1.9002 -2.5105 -1.1855 34 1 3.5199 -2.9051 -2.9289 35 1 4.1940 -3.8895 -1.5888 36 1 5.5902 -1.8100 -2.8284 37 1 5.8909 -2.3392 -1.1464 38 1 6.8746 0.3269 -2.2373 39 1 5.9399 1.6090 -4.5740 40 1 5.9826 2.8050 -3.2565 41 1 7.9855 0.6010 -5.4033 42 1 10.4150 0.8444 -5.7113 43 1 11.6882 2.4000 -4.2912 44 1 12.7757 5.9442 -0.1681 45 1 8.0851 3.4734 -2.2534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331912757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:36 Heat of formation + Delta-G solvation = 28.632608 kcal Electronic energy + Delta-G solvation = -26516.763419 eV Core-core repulsion = 22694.744729 eV Total energy + Delta-G solvation = -3822.018690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.38718 -39.19781 -38.17627 -36.74956 -34.55818 -34.19164 -32.36033 -31.47735 -31.07436 -29.64290 -28.99463 -26.44276 -25.92905 -25.10238 -22.46758 -21.72773 -21.57482 -20.81524 -20.01446 -18.53951 -17.96449 -17.33345 -16.83350 -16.43701 -15.99716 -15.30643 -15.03777 -14.93974 -14.73663 -14.45964 -14.38841 -14.29444 -13.77605 -13.67647 -13.32573 -13.05068 -12.74822 -12.73413 -12.41947 -12.34605 -12.14246 -11.73974 -11.64335 -11.47271 -11.40358 -11.10698 -10.94511 -10.84260 -10.72252 -10.63054 -10.50808 -10.33843 -9.78915 -9.43569 -8.93865 -8.90660 -8.74495 -8.24963 -7.35018 -6.51229 -4.10865 1.87842 2.24916 2.47063 2.69199 2.72526 3.08874 3.08985 3.12838 3.24881 3.88522 3.91077 4.14759 4.27498 4.39045 4.49907 4.60043 4.84828 4.88228 4.94510 5.02962 5.05535 5.17687 5.22084 5.26171 5.33470 5.46307 5.52682 5.54690 5.70010 5.73989 5.77744 5.82771 5.83393 5.92692 6.05785 6.23241 6.43122 6.52731 6.54547 6.59821 6.79762 6.97199 7.17058 7.25256 7.33425 7.46360 7.62043 7.70188 7.92771 8.34814 8.93974 9.62585 10.66403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002208 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.249082 B =12677.203912 C =13219.912720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.156 3.844 4 N -0.490 5.490 5 C 0.036 3.964 6 C -0.122 4.122 7 C -0.124 4.124 8 C 0.048 3.952 9 H 0.083 0.917 10 C 0.517 3.483 11 O -0.520 6.520 12 N -0.723 5.723 13 C 0.170 3.830 14 C -0.072 4.072 15 C -0.195 4.195 16 C -0.076 4.076 17 C -0.226 4.226 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.394 4.394 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.171 4.171 29 H 0.217 0.783 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.402 0.598 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.271 0.729 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 -15.754 0.359 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.172 4.172 3 C 0.029 3.971 4 N -0.214 5.214 5 C -0.091 4.091 6 C -0.160 4.160 7 C -0.162 4.162 8 C -0.064 4.064 9 H 0.101 0.899 10 C 0.302 3.698 11 O -0.395 6.395 12 N -0.376 5.376 13 C 0.047 3.953 14 C -0.073 4.073 15 C -0.215 4.215 16 C -0.094 4.094 17 C -0.246 4.246 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.191 4.191 29 H 0.234 0.766 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.236 0.764 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.979 -14.760 -0.104 21.030 hybrid contribution 1.675 -0.355 0.774 1.879 sum -13.305 -15.116 0.670 20.148 Atomic orbital electron populations 1.24836 0.95818 1.00783 1.00410 1.22659 0.93948 1.00390 1.00232 1.19165 0.85861 1.00098 0.91989 1.64277 1.11882 1.06571 1.38678 1.23339 1.00736 0.86932 0.98090 1.22516 0.94688 0.98230 1.00545 1.22419 0.98337 0.92663 1.02774 1.22334 0.89826 0.95717 0.98555 0.89904 1.20307 0.82707 0.83882 0.82939 1.90705 1.43589 1.52140 1.53032 1.46121 1.07513 1.38789 1.45202 1.20124 0.92108 0.90689 0.92364 1.19275 0.93400 0.97657 0.96928 1.20475 0.94541 1.04371 1.02084 1.20746 0.93840 0.97077 0.97763 1.21238 1.01005 1.02269 1.00057 1.19332 0.91556 0.89097 0.90393 1.83984 1.20397 1.49991 1.53545 1.21275 0.78336 1.29225 1.18149 0.89084 1.25298 1.00482 0.95693 0.94994 1.70025 1.36412 1.25686 1.17440 0.85779 0.80460 0.78665 0.78526 1.19462 1.20243 1.19483 1.20087 0.91899 1.03641 1.03484 0.76633 0.92082 0.88251 0.93292 0.89607 0.90383 0.90431 0.89998 0.90052 0.76410 0.91008 0.90977 0.87514 0.87301 0.85488 0.91885 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.17 -1.94 13.18 -37.12 -0.49 -2.43 16 3 C 0.16 1.62 5.21 -6.61 -0.03 1.59 16 4 N -0.49 -5.39 4.36 -227.32 -0.99 -6.38 16 5 C 0.04 0.31 6.11 -1.81 -0.01 0.29 16 6 C -0.12 -0.90 7.08 -24.78 -0.18 -1.07 16 7 C -0.12 -0.97 6.46 -25.38 -0.16 -1.13 16 8 C 0.05 0.48 2.84 -67.80 -0.19 0.29 16 9 H 0.08 0.70 7.78 -51.93 -0.40 0.30 16 10 C 0.52 6.95 6.99 -10.99 -0.08 6.87 16 11 O -0.52 -9.14 16.46 5.56 0.09 -9.05 16 12 N -0.72 -9.14 5.41 -61.47 -0.33 -9.48 16 13 C 0.17 2.46 5.80 -5.19 -0.03 2.43 16 14 C -0.07 -1.19 5.25 -104.65 -0.55 -1.73 16 15 C -0.20 -3.11 9.70 -39.54 -0.38 -3.49 16 16 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 17 C -0.23 -4.64 9.17 -39.39 -0.36 -5.00 16 18 C 0.15 3.45 6.65 -39.11 -0.26 3.19 16 19 O -0.18 -4.85 9.76 0.04 0.00 -4.85 16 20 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 21 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.71 13.67 55.48 0.76 -23.96 16 24 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.17 -3.40 9.64 -39.39 -0.38 -3.78 16 29 H 0.22 1.33 7.80 -54.10 -0.42 0.91 16 30 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 31 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.05 0.35 7.81 -51.93 -0.41 -0.06 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.69 7.63 -51.93 -0.40 0.30 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 4.44 8.43 -40.82 -0.34 4.10 16 39 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -32.93 386.29 -8.71 -41.65 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.30 Total: 7.78 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.74 Total: -16.47 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.56 Total: -39.82 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.93 -8.71 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331912757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.279 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds