Wall clock time and date at job start Tue Mar 31 2020 16:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17411 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47153 * 55.87847 * 3 2 1 5 5 C 1.48529 * 110.99927 * 287.39684 * 4 3 2 6 6 C 1.55101 * 103.28311 * 200.33291 * 5 4 3 7 7 C 1.54594 * 102.84406 * 37.30508 * 6 5 4 8 8 C 1.47901 * 110.99724 * 169.99921 * 4 3 2 9 9 H 1.08997 * 110.08058 * 26.40576 * 8 4 3 10 10 C 1.50700 * 109.91753 * 265.19751 * 8 4 3 11 11 O 1.21274 * 119.99865 * 0.96078 * 10 8 4 12 12 N 1.34777 * 119.99715 * 180.96130 * 10 8 4 13 13 C 1.46508 * 119.99636 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.46464 * 179.97438 * 13 12 10 15 15 C 1.38326 * 119.96854 * 90.00461 * 14 13 12 16 16 C 1.38272 * 120.14270 * 179.97438 * 15 14 13 17 17 C 1.38132 * 120.06535 * 359.97358 * 16 15 14 18 18 C 1.38854 * 119.93210 * 0.02562 * 17 16 15 19 19 O 1.35752 * 120.06961 * 180.02562 * 18 17 16 20 20 C 1.34832 * 116.99604 * 354.46093 * 19 18 17 21 21 H 1.07998 * 120.00524 * 5.05678 * 20 19 18 22 22 C 1.38661 * 119.99714 * 185.05943 * 20 19 18 23 23 N 1.31555 * 119.99844 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46816 * 59.99879 * 24 22 20 26 26 H 1.48496 * 109.47159 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47301 * 300.00361 * 24 22 20 28 28 C 1.38083 * 119.96321 * 269.71912 * 14 13 12 29 29 H 4.40893 * 5.52069 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47247 * 295.88118 * 3 2 1 31 31 H 1.08997 * 109.47080 * 175.87884 * 3 2 1 32 32 H 1.08997 * 110.67275 * 318.71090 * 5 4 3 33 33 H 1.09006 * 110.66883 * 81.84679 * 5 4 3 34 34 H 1.09011 * 110.70943 * 278.99682 * 6 5 4 35 35 H 1.08998 * 110.81438 * 155.66885 * 6 5 4 36 36 H 1.09006 * 110.31002 * 219.18329 * 7 6 5 37 37 H 1.09003 * 110.30552 * 97.12391 * 7 6 5 38 38 H 0.96993 * 120.00258 * 359.97438 * 12 10 8 39 39 H 1.08994 * 109.47003 * 299.99427 * 13 12 10 40 40 H 1.08996 * 109.47015 * 59.99755 * 13 12 10 41 41 H 1.07999 * 119.92616 * 0.02562 * 15 14 13 42 42 H 1.07994 * 119.96904 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.02779 * 180.02562 * 17 16 15 44 44 H 0.97002 * 120.00165 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.03494 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1361 -0.7761 -1.1466 5 6 2.9233 -2.2306 -0.9342 6 6 3.9277 -2.8851 -1.9182 7 6 5.1499 -1.9417 -1.8399 8 6 4.5947 -0.6029 -1.3195 9 1 5.0579 -0.3550 -0.3645 10 6 4.8668 0.4898 -2.3210 11 8 3.9436 1.0865 -2.8332 12 7 6.1362 0.8039 -2.6473 13 6 6.4008 1.8666 -3.6205 14 6 7.8886 2.0186 -3.8060 15 6 8.5424 1.2832 -4.7781 16 6 9.9073 1.4202 -4.9518 17 6 10.6221 2.2931 -4.1548 18 6 9.9687 3.0328 -3.1781 19 8 10.6684 3.8918 -2.3936 20 6 12.0093 3.8960 -2.5350 21 1 12.4732 3.2958 -3.3037 22 6 12.7927 4.6710 -1.6934 23 7 12.2277 5.4017 -0.7566 24 14 14.6504 4.6764 -1.8888 25 1 15.0036 5.1551 -3.2495 26 1 15.2522 5.5786 -0.8744 27 1 15.1723 3.2993 -1.6976 28 6 8.5968 2.8964 -3.0093 29 1 -1.0499 0.0001 -0.0002 30 1 3.0096 -0.4478 0.9246 31 1 3.0089 1.0258 -0.0739 32 1 3.1577 -2.5077 0.0936 33 1 1.9002 -2.5105 -1.1855 34 1 3.5199 -2.9051 -2.9289 35 1 4.1940 -3.8895 -1.5888 36 1 5.5902 -1.8100 -2.8284 37 1 5.8909 -2.3392 -1.1464 38 1 6.8746 0.3269 -2.2373 39 1 5.9399 1.6090 -4.5740 40 1 5.9826 2.8050 -3.2565 41 1 7.9855 0.6010 -5.4033 42 1 10.4150 0.8444 -5.7113 43 1 11.6882 2.4000 -4.2912 44 1 12.7757 5.9442 -0.1681 45 1 8.0851 3.4734 -2.2534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331912757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:34 Heat of formation + Delta-G solvation = 6.546415 kcal Electronic energy + Delta-G solvation = -26517.721148 eV Core-core repulsion = 22694.744729 eV Total energy + Delta-G solvation = -3822.976419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36068 -40.76279 -39.21415 -38.32842 -35.75405 -34.99968 -34.27951 -32.46447 -32.09894 -30.92154 -30.22191 -27.55310 -27.15600 -26.68612 -23.45849 -23.21003 -22.37517 -22.17618 -21.01176 -19.63115 -19.24350 -18.88652 -18.06233 -17.28346 -17.00241 -16.74736 -16.51795 -16.12798 -15.88874 -15.68457 -15.57428 -15.43198 -15.11223 -14.94042 -14.47102 -14.34407 -13.91264 -13.77632 -13.63766 -13.50913 -13.35368 -13.03104 -12.95979 -12.54696 -12.39792 -12.36049 -12.26066 -12.13696 -12.09719 -11.73067 -11.41177 -11.21632 -11.11959 -10.87791 -10.77492 -10.08567 -9.76376 -9.47058 -9.02562 -8.46488 -6.15042 0.39112 0.71392 1.36160 1.46293 1.52155 1.64935 1.70411 1.90053 2.17059 2.22087 2.84244 3.10873 3.20298 3.39244 3.45002 3.58786 3.69988 3.83121 3.93508 4.07909 4.11218 4.25554 4.31494 4.32951 4.41899 4.44454 4.53829 4.55510 4.67404 4.72705 4.75291 4.87662 4.99859 5.02506 5.07135 5.12224 5.12764 5.24225 5.26322 5.39932 5.63066 5.71303 5.72642 5.74266 5.89524 6.01990 6.17378 6.60301 6.69422 6.98217 7.29648 7.78614 8.76343 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002208 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.249082 B =12677.203912 C =13219.912720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.213 4.213 3 C 0.155 3.845 4 N -0.516 5.516 5 C 0.037 3.963 6 C -0.117 4.117 7 C -0.119 4.119 8 C 0.050 3.950 9 H 0.101 0.899 10 C 0.517 3.483 11 O -0.566 6.566 12 N -0.715 5.715 13 C 0.176 3.824 14 C -0.057 4.057 15 C -0.168 4.168 16 C -0.069 4.069 17 C -0.234 4.234 18 C 0.112 3.888 19 O -0.232 6.232 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.018 2.982 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.255 1.255 28 C -0.182 4.182 29 H 0.247 0.753 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.123 -19.094 -1.010 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.214 4.214 3 C 0.029 3.971 4 N -0.241 5.241 5 C -0.089 4.089 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.062 4.062 9 H 0.119 0.881 10 C 0.303 3.697 11 O -0.444 6.444 12 N -0.368 5.368 13 C 0.052 3.948 14 C -0.057 4.057 15 C -0.187 4.187 16 C -0.086 4.086 17 C -0.254 4.254 18 C 0.062 3.938 19 O -0.139 6.139 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.837 3.163 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.180 1.180 28 C -0.202 4.202 29 H 0.263 0.737 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.083 -18.160 -1.501 23.654 hybrid contribution 1.369 0.511 1.025 1.785 sum -13.714 -17.649 -0.476 22.356 Atomic orbital electron populations 1.25676 0.96751 0.99345 0.99112 1.23170 0.94886 1.01773 1.01542 1.19157 0.85753 0.99347 0.92866 1.64186 1.12389 1.08115 1.39404 1.23371 1.00767 0.85470 0.99328 1.22521 0.94004 0.99305 0.99666 1.22466 0.98914 0.91279 1.03074 1.22374 0.89977 0.95625 0.98199 0.88146 1.20973 0.81989 0.83934 0.82759 1.90684 1.44887 1.53930 1.54913 1.45998 1.07919 1.38129 1.44721 1.19980 0.90400 0.90985 0.93387 1.19425 0.94209 0.96143 0.95955 1.20984 0.94312 1.02822 1.00557 1.21162 0.94291 0.95829 0.97366 1.21374 1.01080 1.02800 1.00123 1.19860 0.92595 0.90064 0.91300 1.83951 1.20837 1.52943 1.56151 1.21786 0.78834 1.29563 1.18665 0.87871 1.26587 1.05967 0.95094 0.94461 1.70180 1.38478 1.27864 1.19411 0.84658 0.73487 0.79285 0.78884 1.18210 1.19908 1.17966 1.20210 0.91122 1.04588 1.04237 0.73705 0.90028 0.90059 0.91672 0.90326 0.91615 0.87927 0.90454 0.87488 0.75208 0.89833 0.92310 0.83447 0.83308 0.86139 0.91896 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 19.25 74.32 1.43 -2.12 16 2 C -0.21 -4.74 13.18 31.12 0.41 -4.33 16 3 C 0.16 3.19 5.21 84.50 0.44 3.63 16 4 N -0.52 -10.86 4.36 -873.11 -3.81 -14.66 16 5 C 0.04 0.56 6.11 86.71 0.53 1.09 16 6 C -0.12 -1.40 7.08 31.86 0.23 -1.18 16 7 C -0.12 -1.51 6.46 31.47 0.20 -1.31 16 8 C 0.05 0.92 2.84 44.31 0.13 1.05 16 9 H 0.10 1.50 7.78 -2.39 -0.02 1.48 16 10 C 0.52 13.39 6.99 87.66 0.61 14.00 16 11 O -0.57 -19.94 16.46 -3.01 -0.05 -19.99 16 12 N -0.71 -16.88 5.41 -466.79 -2.53 -19.41 16 13 C 0.18 4.82 5.80 85.63 0.50 5.32 16 14 C -0.06 -1.77 5.25 -19.88 -0.10 -1.87 16 15 C -0.17 -4.64 9.70 22.30 0.22 -4.42 16 16 C -0.07 -2.09 10.04 22.25 0.22 -1.87 16 17 C -0.23 -9.47 9.17 22.39 0.21 -9.26 16 18 C 0.11 5.31 6.65 22.58 0.15 5.46 16 19 O -0.23 -13.59 9.76 -22.78 -0.22 -13.81 16 20 C -0.41 -23.33 9.49 67.92 0.64 -22.68 16 21 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 22 C -0.02 -1.31 5.49 84.84 0.47 -0.85 16 23 N -0.92 -55.85 13.67 21.61 0.30 -55.55 16 24 Si 1.02 41.78 29.55 68.60 2.03 43.80 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 28 C -0.18 -7.35 9.64 22.39 0.22 -7.14 16 29 H 0.25 2.53 7.80 -4.42 -0.03 2.50 16 30 H 0.08 1.25 7.83 -2.38 -0.02 1.23 16 31 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 32 H 0.07 0.76 7.81 -2.39 -0.02 0.74 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.07 7.63 -2.38 -0.02 1.05 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.41 8.16 8.43 -92.71 -0.78 7.38 16 39 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 40 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 43 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 44 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -77.67 386.29 2.43 -75.24 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.22 Total: 30.86 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 6.49 Total: -26.48 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -6.04 Total: -89.62 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.27 Total: -33.80 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -77.67 2.43 -75.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331912757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.785 kcal (2) G-P(sol) polarization free energy of solvation -77.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds