Wall clock time and date at job start Tue Mar 31 2020 16:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46763 * 2 1 4 4 H 1.09000 * 109.47191 * 55.00259 * 3 2 1 5 5 C 1.53006 * 109.46799 * 175.00217 * 3 2 1 6 6 S 1.81403 * 109.46845 * 184.99981 * 5 3 2 7 7 C 1.81397 * 102.99679 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47097 * 294.99937 * 3 2 1 9 9 C 1.34777 * 120.00152 * 85.00505 * 8 3 2 10 10 O 1.21356 * 119.99678 * 359.97438 * 9 8 3 11 11 C 1.49450 * 120.00196 * 180.02562 * 9 8 3 12 12 O 1.21341 * 119.99883 * 6.74159 * 11 9 8 13 13 N 1.34781 * 119.99836 * 186.74220 * 11 9 8 14 14 C 1.46922 * 120.63064 * 8.42497 * 13 11 9 15 15 C 1.53629 * 108.54401 * 126.36782 * 14 13 11 16 16 C 1.53042 * 109.23914 * 54.85278 * 15 14 13 17 17 C 1.53037 * 109.53916 * 298.51322 * 16 15 14 18 18 H 1.09001 * 109.49766 * 301.41350 * 17 16 15 19 19 C 1.50702 * 109.52247 * 181.33554 * 17 16 15 20 20 H 1.08004 * 120.00091 * 0.14102 * 19 17 16 21 21 C 1.37873 * 119.99854 * 180.14792 * 19 17 16 22 22 N 1.31515 * 120.00409 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99784 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47060 * 89.99828 * 23 21 19 25 25 H 1.48503 * 109.46958 * 209.99818 * 23 21 19 26 26 H 1.48503 * 109.47340 * 329.99697 * 23 21 19 27 27 C 1.46921 * 120.62701 * 188.70394 * 13 11 9 28 28 H 1.09005 * 109.47465 * 299.99606 * 1 2 3 29 29 H 1.08999 * 109.47755 * 60.00070 * 1 2 3 30 30 H 1.09004 * 109.47316 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47272 * 119.99802 * 2 1 3 32 32 H 1.08998 * 109.46992 * 239.99906 * 2 1 3 33 33 H 1.08998 * 109.46712 * 304.99947 * 5 3 2 34 34 H 1.08999 * 109.47228 * 65.00159 * 5 3 2 35 35 H 1.08997 * 109.47496 * 59.99947 * 7 6 5 36 36 H 1.08996 * 109.46853 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47140 * 299.99827 * 7 6 5 38 38 H 0.97000 * 120.00531 * 265.00215 * 8 3 2 39 39 H 1.08991 * 109.58849 * 246.20048 * 14 13 11 40 40 H 1.09003 * 109.58922 * 6.62839 * 14 13 11 41 41 H 1.09005 * 109.63176 * 294.86328 * 15 14 13 42 42 H 1.08994 * 109.43197 * 174.72268 * 15 14 13 43 43 H 1.08998 * 109.45728 * 178.49028 * 16 15 14 44 44 H 1.09001 * 109.44679 * 58.52887 * 16 15 14 45 45 H 0.96998 * 120.00079 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.59345 * 353.37330 * 27 13 11 47 47 H 1.09001 * 109.59008 * 113.80184 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 16 4.1571 3.1525 0.2744 7 6 5.9546 2.9505 0.4114 8 7 1.6523 2.0975 -1.2518 9 6 0.4350 2.6644 -1.3669 10 8 -0.3401 2.6319 -0.4338 11 6 0.0394 3.3320 -2.6441 12 8 0.7619 3.2586 -3.6162 13 7 -1.1199 4.0157 -2.7162 14 6 -1.9150 4.2707 -1.5073 15 6 -2.1844 5.7800 -1.4091 16 6 -2.8406 6.2605 -2.7055 17 6 -1.8912 6.0165 -3.8807 18 1 -0.9540 6.5451 -3.7070 19 6 -2.5243 6.5196 -5.1524 20 1 -3.5052 6.9709 -5.1255 21 6 -1.8514 6.4037 -6.3501 22 7 -0.6568 5.8545 -6.3829 23 14 -2.6364 7.0267 -7.9266 24 1 -2.2613 8.4479 -8.1382 25 1 -2.1584 6.2126 -9.0729 26 1 -4.1135 6.9149 -7.8218 27 6 -1.6156 4.5147 -4.0061 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.8570 0.8801 1.0112 34 1 4.0029 0.9837 -0.7597 35 1 6.3333 2.4520 -0.4809 36 1 6.4240 3.9296 0.5069 37 1 6.1867 2.3487 1.2900 38 1 2.2717 2.1232 -1.9978 39 1 -2.8600 3.7314 -1.5709 40 1 -1.3611 3.9391 -0.6289 41 1 -1.2443 6.3108 -1.2586 42 1 -2.8515 5.9753 -0.5695 43 1 -3.0579 7.3258 -2.6293 44 1 -3.7682 5.7114 -2.8679 45 1 -0.1833 5.7733 -7.2255 46 1 -0.8643 4.3443 -4.7771 47 1 -2.5369 3.9950 -4.2694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334146873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:56 Heat of formation + Delta-G solvation = -69.143146 kcal Electronic energy + Delta-G solvation = -27056.289779 eV Core-core repulsion = 23365.475166 eV Total energy + Delta-G solvation = -3690.814613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60180 -38.60265 -36.80369 -36.39036 -33.27987 -32.39183 -31.66954 -30.37198 -29.69788 -29.13950 -25.96900 -24.96416 -24.17383 -22.87460 -21.76376 -20.88723 -20.14109 -18.79249 -17.20948 -16.94163 -16.47997 -16.19538 -15.99790 -15.41985 -14.80832 -14.53804 -14.41644 -14.21328 -14.12767 -13.86376 -13.71906 -13.32542 -13.18604 -13.05183 -13.00764 -12.81023 -12.54100 -12.19541 -12.06598 -11.75575 -11.60659 -11.32202 -11.27873 -10.98088 -10.94255 -10.66721 -10.41156 -10.26663 -10.24292 -10.08168 -9.83604 -9.21800 -9.14059 -9.07440 -8.50616 -8.40767 -7.91864 -7.76499 -5.98129 -4.06816 1.33520 1.87444 2.28727 2.72879 3.32269 3.39318 3.41902 3.70179 3.99333 4.22018 4.44361 4.63041 4.75460 4.80420 4.82407 4.86792 4.96463 5.11676 5.24846 5.31696 5.40070 5.51569 5.65506 5.67248 5.70385 5.82522 5.90462 5.99402 6.16080 6.29025 6.34120 6.41179 6.58369 6.64879 6.75982 6.89457 7.02790 7.08031 7.22706 7.31133 7.63219 7.87113 7.98795 8.03111 8.22144 8.39482 8.64429 8.97234 9.58590 11.07012 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003202 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.932740 B = 8741.152640 C = 9384.335859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.160 3.840 4 H 0.102 0.898 5 C -0.100 4.100 6 S -0.243 6.243 7 C -0.126 4.126 8 N -0.696 5.696 9 C 0.514 3.486 10 O -0.514 6.514 11 C 0.494 3.506 12 O -0.520 6.520 13 N -0.570 5.570 14 C 0.072 3.928 15 C -0.133 4.133 16 C -0.112 4.112 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.519 4.519 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.109 3.891 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.059 0.941 40 H 0.127 0.873 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.124 0.876 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -11.577 15.710 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.120 0.880 5 C -0.249 4.249 6 S -0.017 6.017 7 C -0.295 4.295 8 N -0.350 5.350 9 C 0.297 3.703 10 O -0.391 6.391 11 C 0.274 3.726 12 O -0.397 6.397 13 N -0.302 5.302 14 C -0.051 4.051 15 C -0.171 4.171 16 C -0.150 4.150 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.558 4.558 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.011 4.011 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.559 -10.730 15.719 20.868 hybrid contribution 0.657 -0.733 -1.286 1.619 sum 9.216 -11.463 14.433 20.607 Atomic orbital electron populations 1.21812 0.94170 1.00948 1.03455 1.21958 0.97689 0.94736 1.02507 1.20814 0.90988 0.94353 0.88385 0.88030 1.23802 0.98476 0.96777 1.05867 1.87451 1.05744 1.11582 1.96937 1.23406 0.94896 1.06511 1.04702 1.45835 1.16471 1.56103 1.16581 1.20658 0.81989 0.78757 0.88901 1.90472 1.50254 1.57525 1.40842 1.19822 0.83168 0.81631 0.87933 1.90771 1.50587 1.60733 1.37634 1.48415 1.19957 1.50612 1.11181 1.22784 0.96692 0.96121 0.89454 1.22033 1.00706 0.95689 0.98720 1.21653 0.99058 0.99702 0.94588 1.18955 0.95067 0.91252 0.92528 0.95202 1.21093 1.03355 1.39773 0.91589 0.92309 1.25060 0.94812 0.95030 0.99166 1.69887 1.12178 1.43234 1.26517 0.86588 0.79548 0.78787 0.83047 1.20683 1.21199 1.19920 1.22461 0.99719 0.96563 0.82371 0.91831 0.92219 0.93274 0.90857 0.91439 0.88418 0.89268 0.90426 0.87978 0.90628 0.74952 0.92288 0.85567 0.92398 0.92230 0.93117 0.93229 0.92674 0.85843 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.51 37.16 0.32 -1.27 16 2 C -0.13 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.16 1.59 2.25 -67.93 -0.15 1.44 16 4 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 5 C -0.10 -0.79 5.46 37.16 0.20 -0.58 16 6 S -0.24 -2.52 22.11 -107.50 -2.38 -4.89 16 7 C -0.13 -0.87 10.76 101.05 1.09 0.22 16 8 N -0.70 -9.01 4.73 -54.23 -0.26 -9.27 16 9 C 0.51 8.36 6.31 -11.58 -0.07 8.29 16 10 O -0.51 -8.36 10.31 5.49 0.06 -8.31 16 11 C 0.49 10.07 7.73 -11.58 -0.09 9.98 16 12 O -0.52 -12.09 15.93 5.50 0.09 -12.00 16 13 N -0.57 -12.00 2.97 -173.02 -0.51 -12.52 16 14 C 0.07 1.29 6.01 -3.49 -0.02 1.27 16 15 C -0.13 -2.39 6.10 -26.38 -0.16 -2.55 16 16 C -0.11 -2.34 5.11 -26.69 -0.14 -2.48 16 17 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 18 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.52 -14.20 8.57 -34.44 -0.29 -14.49 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -25.61 11.39 55.43 0.63 -24.98 16 23 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.11 2.66 5.41 -3.71 -0.02 2.64 16 28 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 29 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.41 5.34 8.09 -40.82 -0.33 5.01 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.13 2.19 4.31 -54.83 -0.24 1.95 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 3.47 5.12 -51.93 -0.27 3.20 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -30.88 380.45 -9.26 -40.14 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.81 Total: 6.15 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.21 Total: 3.66 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.14 Total: -46.76 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.14 Total: -20.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.38 Total: -4.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.88 -9.26 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334146873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.007 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds