Wall clock time and date at job start Tue Mar 31 2020 16:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46763 * 2 1 4 4 H 1.09000 * 109.47191 * 55.00259 * 3 2 1 5 5 C 1.53006 * 109.46799 * 175.00217 * 3 2 1 6 6 S 1.81403 * 109.46845 * 184.99981 * 5 3 2 7 7 C 1.81397 * 102.99679 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47097 * 294.99937 * 3 2 1 9 9 C 1.34777 * 120.00152 * 85.00505 * 8 3 2 10 10 O 1.21356 * 119.99678 * 359.97438 * 9 8 3 11 11 C 1.49450 * 120.00196 * 180.02562 * 9 8 3 12 12 O 1.21341 * 119.99883 * 6.74159 * 11 9 8 13 13 N 1.34781 * 119.99836 * 186.74220 * 11 9 8 14 14 C 1.46922 * 120.63064 * 8.42497 * 13 11 9 15 15 C 1.53629 * 108.54401 * 126.36782 * 14 13 11 16 16 C 1.53042 * 109.23914 * 54.85278 * 15 14 13 17 17 C 1.53037 * 109.53916 * 298.51322 * 16 15 14 18 18 H 1.09001 * 109.49766 * 301.41350 * 17 16 15 19 19 C 1.50702 * 109.52247 * 181.33554 * 17 16 15 20 20 H 1.08004 * 120.00091 * 0.14102 * 19 17 16 21 21 C 1.37873 * 119.99854 * 180.14792 * 19 17 16 22 22 N 1.31515 * 120.00409 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99784 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47060 * 89.99828 * 23 21 19 25 25 H 1.48503 * 109.46958 * 209.99818 * 23 21 19 26 26 H 1.48503 * 109.47340 * 329.99697 * 23 21 19 27 27 C 1.46921 * 120.62701 * 188.70394 * 13 11 9 28 28 H 1.09005 * 109.47465 * 299.99606 * 1 2 3 29 29 H 1.08999 * 109.47755 * 60.00070 * 1 2 3 30 30 H 1.09004 * 109.47316 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47272 * 119.99802 * 2 1 3 32 32 H 1.08998 * 109.46992 * 239.99906 * 2 1 3 33 33 H 1.08998 * 109.46712 * 304.99947 * 5 3 2 34 34 H 1.08999 * 109.47228 * 65.00159 * 5 3 2 35 35 H 1.08997 * 109.47496 * 59.99947 * 7 6 5 36 36 H 1.08996 * 109.46853 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47140 * 299.99827 * 7 6 5 38 38 H 0.97000 * 120.00531 * 265.00215 * 8 3 2 39 39 H 1.08991 * 109.58849 * 246.20048 * 14 13 11 40 40 H 1.09003 * 109.58922 * 6.62839 * 14 13 11 41 41 H 1.09005 * 109.63176 * 294.86328 * 15 14 13 42 42 H 1.08994 * 109.43197 * 174.72268 * 15 14 13 43 43 H 1.08998 * 109.45728 * 178.49028 * 16 15 14 44 44 H 1.09001 * 109.44679 * 58.52887 * 16 15 14 45 45 H 0.96998 * 120.00079 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.59345 * 353.37330 * 27 13 11 47 47 H 1.09001 * 109.59008 * 113.80184 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 16 4.1571 3.1525 0.2744 7 6 5.9546 2.9505 0.4114 8 7 1.6523 2.0975 -1.2518 9 6 0.4350 2.6644 -1.3669 10 8 -0.3401 2.6319 -0.4338 11 6 0.0394 3.3320 -2.6441 12 8 0.7619 3.2586 -3.6162 13 7 -1.1199 4.0157 -2.7162 14 6 -1.9150 4.2707 -1.5073 15 6 -2.1844 5.7800 -1.4091 16 6 -2.8406 6.2605 -2.7055 17 6 -1.8912 6.0165 -3.8807 18 1 -0.9540 6.5451 -3.7070 19 6 -2.5243 6.5196 -5.1524 20 1 -3.5052 6.9709 -5.1255 21 6 -1.8514 6.4037 -6.3501 22 7 -0.6568 5.8545 -6.3829 23 14 -2.6364 7.0267 -7.9266 24 1 -2.2613 8.4479 -8.1382 25 1 -2.1584 6.2126 -9.0729 26 1 -4.1135 6.9149 -7.8218 27 6 -1.6156 4.5147 -4.0061 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.8570 0.8801 1.0112 34 1 4.0029 0.9837 -0.7597 35 1 6.3333 2.4520 -0.4809 36 1 6.4240 3.9296 0.5069 37 1 6.1867 2.3487 1.2900 38 1 2.2717 2.1232 -1.9978 39 1 -2.8600 3.7314 -1.5709 40 1 -1.3611 3.9391 -0.6289 41 1 -1.2443 6.3108 -1.2586 42 1 -2.8515 5.9753 -0.5695 43 1 -3.0579 7.3258 -2.6293 44 1 -3.7682 5.7114 -2.8679 45 1 -0.1833 5.7733 -7.2255 46 1 -0.8643 4.3443 -4.7771 47 1 -2.5369 3.9950 -4.2694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334146873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:55 Heat of formation + Delta-G solvation = -88.658134 kcal Electronic energy + Delta-G solvation = -27057.136013 eV Core-core repulsion = 23365.475166 eV Total energy + Delta-G solvation = -3691.660847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99443 -40.06018 -38.48040 -37.51171 -35.21777 -33.58241 -33.26640 -31.55821 -31.13953 -29.70541 -27.66437 -26.81154 -25.14612 -24.19399 -23.49930 -21.86718 -21.59801 -20.44413 -18.81055 -18.28131 -17.98841 -17.42660 -17.24372 -16.86706 -16.43613 -16.11555 -15.66398 -15.42134 -14.95287 -14.90253 -14.81132 -14.63080 -14.61448 -14.42102 -14.15274 -13.87169 -13.78017 -13.65395 -13.46443 -12.99692 -12.91649 -12.86653 -12.51741 -12.37355 -12.28262 -12.13157 -12.04568 -11.79471 -11.72316 -11.60034 -11.13635 -10.97514 -10.92715 -10.53640 -10.32258 -9.95622 -9.52185 -8.69764 -8.10532 -6.27858 0.42493 0.68790 1.37585 1.42520 1.44436 1.53525 1.67165 2.20371 2.41932 2.60389 3.17134 3.35132 3.50088 3.98031 4.02655 4.13359 4.17498 4.30251 4.33054 4.35595 4.36516 4.46826 4.51374 4.59800 4.71759 4.74804 4.81755 4.86054 4.90253 4.92685 5.05588 5.07811 5.15272 5.20369 5.23451 5.29990 5.39659 5.47933 5.52498 5.57853 5.85153 5.94949 6.03808 6.30909 6.46314 6.77620 6.85033 7.03589 7.42008 8.93116 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003202 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.932740 B = 8741.152640 C = 9384.335859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.159 3.841 4 H 0.090 0.910 5 C -0.079 4.079 6 S -0.329 6.329 7 C -0.107 4.107 8 N -0.681 5.681 9 C 0.524 3.476 10 O -0.513 6.513 11 C 0.483 3.517 12 O -0.559 6.559 13 N -0.577 5.577 14 C 0.073 3.927 15 C -0.126 4.126 16 C -0.106 4.106 17 C 0.040 3.960 18 H -0.013 1.013 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.011 3.989 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.263 1.263 27 C 0.122 3.878 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.414 0.586 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.261 0.739 46 H 0.084 0.916 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -12.985 17.557 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C 0.054 3.946 4 H 0.108 0.892 5 C -0.227 4.227 6 S -0.103 6.103 7 C -0.276 4.276 8 N -0.334 5.334 9 C 0.305 3.695 10 O -0.392 6.392 11 C 0.266 3.734 12 O -0.438 6.438 13 N -0.309 5.309 14 C -0.048 4.048 15 C -0.164 4.164 16 C -0.144 4.144 17 C 0.021 3.979 18 H 0.005 0.995 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.552 5.552 23 Si 0.785 3.215 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.187 1.187 27 C 0.000 4.000 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.091 0.909 40 H 0.156 0.844 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.631 -12.150 17.615 23.074 hybrid contribution 0.703 -0.320 -1.823 1.979 sum 9.334 -12.471 15.793 22.182 Atomic orbital electron populations 1.21782 0.95878 1.01215 1.01500 1.21945 0.96018 0.93704 1.04487 1.21062 0.92677 0.94783 0.86039 0.89179 1.23764 0.96332 0.94685 1.07950 1.87761 1.10111 1.15232 1.97213 1.23403 0.91060 1.07085 1.06024 1.45855 1.14884 1.54855 1.17798 1.19737 0.83298 0.79360 0.87066 1.90453 1.50573 1.58059 1.40070 1.20648 0.82413 0.81060 0.89310 1.90737 1.51614 1.61932 1.39507 1.48442 1.20737 1.50732 1.10953 1.23004 0.97053 0.96429 0.88335 1.22002 1.00760 0.95206 0.98424 1.21546 0.98371 1.00215 0.94227 1.18886 0.94053 0.91047 0.93958 0.99478 1.21486 1.03544 1.39724 0.92728 0.91937 1.25894 0.95204 0.95168 1.02604 1.70073 1.13662 1.44436 1.27052 0.85534 0.79074 0.78138 0.78786 1.20175 1.21122 1.18722 1.21922 0.98278 0.96359 0.83449 0.92584 0.95286 0.91947 0.87584 0.90633 0.85326 0.87878 0.89540 0.87930 0.88673 0.74924 0.90902 0.84359 0.93546 0.88211 0.92813 0.92362 0.92991 0.89727 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.51 71.98 0.61 -2.29 16 2 C -0.12 -1.73 5.61 30.59 0.17 -1.56 16 3 C 0.16 2.83 2.25 44.99 0.10 2.93 16 4 H 0.09 1.90 7.58 -2.39 -0.02 1.88 16 5 C -0.08 -1.02 5.46 71.98 0.39 -0.63 16 6 S -0.33 -6.48 22.11 -56.49 -1.25 -7.73 16 7 C -0.11 -1.26 10.76 113.37 1.22 -0.04 16 8 N -0.68 -17.33 4.73 -443.86 -2.10 -19.43 16 9 C 0.52 17.14 6.31 87.27 0.55 17.69 16 10 O -0.51 -16.40 10.31 -3.27 -0.03 -16.44 16 11 C 0.48 20.46 7.73 87.27 0.67 21.14 16 12 O -0.56 -27.43 15.93 -3.22 -0.05 -27.48 16 13 N -0.58 -25.04 2.97 -819.66 -2.43 -27.47 16 14 C 0.07 2.56 6.01 86.51 0.52 3.08 16 15 C -0.13 -4.36 6.10 30.82 0.19 -4.17 16 16 C -0.11 -4.39 5.11 30.62 0.16 -4.23 16 17 C 0.04 2.08 2.25 -11.46 -0.03 2.05 16 18 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 19 C -0.54 -30.02 8.57 25.60 0.22 -29.80 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 21 C 0.01 0.61 5.30 84.65 0.45 1.06 16 22 N -0.91 -55.49 11.39 21.45 0.24 -55.24 16 23 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 27 C 0.12 6.24 5.41 86.36 0.47 6.70 16 28 H 0.06 1.18 7.85 -2.38 -0.02 1.16 16 29 H 0.03 0.75 5.64 -2.39 -0.01 0.73 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.41 10.68 8.09 -92.71 -0.75 9.93 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.14 4.63 4.31 -48.38 -0.21 4.42 16 41 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 46 H 0.08 5.05 5.12 -2.39 -0.01 5.04 16 47 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -71.43 380.45 2.12 -69.31 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.02 Total: 26.08 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.70 Total: 11.93 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -4.28 Total: -102.15 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.08 Total: -43.92 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.25 Total: -7.73 kcal Total: -71.43 2.12 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334146873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.351 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds