Wall clock time and date at job start Tue Mar 31 2020 16:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 H 1.09005 * 109.46993 * 304.99764 * 3 2 1 5 5 C 1.53004 * 109.47170 * 185.00179 * 3 2 1 6 6 S 1.81397 * 109.46922 * 179.97438 * 5 3 2 7 7 C 1.81400 * 103.00132 * 179.97438 * 6 5 3 8 8 N 1.46492 * 109.47154 * 64.99741 * 3 2 1 9 9 C 1.34776 * 120.00438 * 275.00383 * 8 3 2 10 10 O 1.21353 * 119.99680 * 359.97438 * 9 8 3 11 11 C 1.49446 * 120.00278 * 180.02562 * 9 8 3 12 12 O 1.21352 * 120.00120 * 353.21967 * 11 9 8 13 13 N 1.34779 * 119.99973 * 172.94284 * 11 9 8 14 14 C 1.46923 * 120.63228 * 351.58912 * 13 11 9 15 15 C 1.53186 * 108.77873 * 233.58730 * 14 13 11 16 16 C 1.53043 * 109.31069 * 305.36324 * 15 14 13 17 17 C 1.53042 * 109.53737 * 61.36655 * 16 15 14 18 18 H 1.09003 * 109.49845 * 58.61952 * 17 16 15 19 19 C 1.50698 * 109.49769 * 178.68288 * 17 16 15 20 20 H 1.07999 * 120.00170 * 359.97438 * 19 17 16 21 21 C 1.37874 * 120.00235 * 179.97438 * 19 17 16 22 22 N 1.31518 * 119.99610 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 120.00554 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46925 * 59.99915 * 23 21 19 25 25 H 1.48494 * 109.47468 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47067 * 300.00540 * 23 21 19 27 27 C 1.46927 * 120.63143 * 171.31102 * 13 11 9 28 28 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47113 * 300.00066 * 1 2 3 30 30 H 1.09002 * 109.47022 * 60.00573 * 1 2 3 31 31 H 1.09007 * 109.47311 * 239.99899 * 2 1 3 32 32 H 1.09001 * 109.47406 * 119.99804 * 2 1 3 33 33 H 1.09005 * 109.46824 * 299.99689 * 5 3 2 34 34 H 1.08999 * 109.47238 * 59.99775 * 5 3 2 35 35 H 1.09001 * 109.46968 * 59.99365 * 7 6 5 36 36 H 1.08992 * 109.47804 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.46803 * 300.00122 * 7 6 5 38 38 H 0.97008 * 119.99960 * 95.00571 * 8 3 2 39 39 H 1.09007 * 109.58427 * 353.37354 * 14 13 11 40 40 H 1.09002 * 109.58378 * 113.65488 * 14 13 11 41 41 H 1.08998 * 109.49946 * 65.31644 * 15 14 13 42 42 H 1.09001 * 109.49716 * 185.41300 * 15 14 13 43 43 H 1.09004 * 109.45530 * 181.38365 * 16 15 14 44 44 H 1.08994 * 109.46076 * 301.36040 * 16 15 14 45 45 H 0.97003 * 119.99940 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.58496 * 246.20660 * 27 13 11 47 47 H 1.09000 * 109.58204 * 6.62800 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 16 4.1694 3.1546 -0.1265 7 6 5.9656 2.9525 -0.2797 8 7 1.6524 2.0975 1.2517 9 6 0.4351 2.6644 1.3669 10 8 -0.3398 2.6326 0.4335 11 6 0.0399 3.3330 2.6437 12 8 0.7626 3.2600 3.6159 13 7 -1.1164 4.0219 2.7138 14 6 -1.9080 4.2811 1.5035 15 6 -2.1738 5.7862 1.4010 16 6 -2.8275 6.2740 2.6959 17 6 -1.8786 6.0301 3.8717 18 1 -0.9394 6.5546 3.6961 19 6 -2.5098 6.5402 5.1415 20 1 -3.4896 6.9935 5.1133 21 6 -1.8364 6.4280 6.3394 22 7 -0.6430 5.8763 6.3737 23 14 -2.6183 7.0609 7.9134 24 1 -3.8976 6.3458 8.1527 25 1 -1.6978 6.8227 9.0540 26 1 -2.8815 8.5166 7.7847 27 6 -1.6123 4.5228 4.0030 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.9053 0.7161 34 1 3.8532 0.9570 -1.0571 35 1 6.1942 2.4268 -1.2068 36 1 6.4419 3.9327 -0.2913 37 1 6.3398 2.3762 0.5664 38 1 2.2719 2.1232 1.9977 39 1 -1.3539 3.9473 0.6261 40 1 -2.8545 3.7440 1.5641 41 1 -1.2315 6.3125 1.2484 42 1 -2.8403 5.9815 0.5610 43 1 -3.0401 7.3402 2.6161 44 1 -3.7572 5.7296 2.8609 45 1 -0.1690 5.7978 7.2164 46 1 -2.5363 4.0070 4.2643 47 1 -0.8631 4.3486 4.7753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334146875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:02 Heat of formation + Delta-G solvation = -69.113299 kcal Electronic energy + Delta-G solvation = -27070.919176 eV Core-core repulsion = 23380.105856 eV Total energy + Delta-G solvation = -3690.813319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59714 -38.59729 -36.79994 -36.38450 -33.27046 -32.38874 -31.67248 -30.37107 -29.69825 -29.13084 -25.96561 -24.95972 -24.17135 -22.86654 -21.75955 -20.87930 -20.13239 -18.79319 -17.20224 -16.94569 -16.47508 -16.18911 -15.99396 -15.40649 -14.81068 -14.53416 -14.42154 -14.20774 -14.12183 -13.84716 -13.70940 -13.33124 -13.21720 -13.04374 -12.99112 -12.80807 -12.53381 -12.18809 -12.05942 -11.74899 -11.60085 -11.32020 -11.27076 -10.97748 -10.92519 -10.68131 -10.42322 -10.26371 -10.23783 -10.07913 -9.83127 -9.21248 -9.13868 -9.06644 -8.50679 -8.40595 -7.91138 -7.75993 -5.97598 -4.06307 1.33572 1.87928 2.29389 2.73828 3.33756 3.39257 3.40950 3.70562 4.00111 4.22419 4.44730 4.62321 4.76299 4.81024 4.82885 4.87347 4.96446 5.12137 5.25117 5.32082 5.40653 5.51407 5.65433 5.67365 5.71588 5.82540 5.90646 5.99497 6.16487 6.29114 6.34211 6.41564 6.58498 6.64636 6.76318 6.89774 7.02760 7.08533 7.22492 7.31974 7.62913 7.87128 7.99155 8.03409 8.22368 8.39848 8.64835 8.97413 9.58949 11.07582 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003234 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.313951 B = 8656.526523 C = 9340.668196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.160 3.840 4 H 0.101 0.899 5 C -0.101 4.101 6 S -0.241 6.241 7 C -0.127 4.127 8 N -0.696 5.696 9 C 0.514 3.486 10 O -0.514 6.514 11 C 0.493 3.507 12 O -0.520 6.520 13 N -0.570 5.570 14 C 0.072 3.928 15 C -0.133 4.133 16 C -0.112 4.112 17 C 0.042 3.958 18 H 0.030 0.970 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.109 3.891 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.264 0.736 46 H 0.047 0.953 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 -11.609 -15.697 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.119 0.881 5 C -0.250 4.250 6 S -0.015 6.015 7 C -0.296 4.296 8 N -0.350 5.350 9 C 0.297 3.703 10 O -0.391 6.391 11 C 0.274 3.726 12 O -0.397 6.397 13 N -0.302 5.302 14 C -0.050 4.050 15 C -0.172 4.172 16 C -0.150 4.150 17 C 0.023 3.977 18 H 0.048 0.952 19 C -0.559 4.559 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.518 5.518 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.011 4.011 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.556 -10.757 -15.624 20.809 hybrid contribution 0.633 -0.742 1.180 1.531 sum 9.190 -11.499 -14.444 20.623 Atomic orbital electron populations 1.21810 0.94173 1.00942 1.03453 1.21960 0.97684 0.94757 1.02501 1.20815 0.90966 0.94354 0.88403 0.88068 1.23811 0.98425 0.96827 1.05942 1.87481 1.05567 1.11160 1.97299 1.23411 0.94979 1.06549 1.04632 1.45842 1.16448 1.56056 1.16626 1.20656 0.81983 0.78770 0.88904 1.90472 1.50291 1.57545 1.40825 1.19826 0.83153 0.81642 0.87936 1.90775 1.50447 1.60849 1.37618 1.48414 1.20272 1.50350 1.11147 1.22678 0.96765 0.96147 0.89408 1.21955 1.00727 0.95721 0.98748 1.21655 0.99075 0.99678 0.94599 1.19023 0.95076 0.91140 0.92477 0.95154 1.21059 1.03437 1.39726 0.91707 0.92372 1.25058 0.94799 0.95039 0.99142 1.69886 1.12168 1.43149 1.26590 0.86647 0.79094 0.79376 0.82818 1.20275 1.21269 1.20283 1.22546 0.99617 0.96524 0.82401 0.93279 0.92216 0.91837 0.90866 0.91442 0.89283 0.88445 0.90646 0.87967 0.90436 0.74883 0.85622 0.92329 0.92415 0.92199 0.93115 0.93230 0.92621 0.93432 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.51 37.16 0.32 -1.27 16 2 C -0.13 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.16 1.59 2.31 -67.93 -0.16 1.43 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 C -0.10 -0.79 5.50 37.16 0.20 -0.59 16 6 S -0.24 -2.51 21.96 -107.50 -2.36 -4.87 16 7 C -0.13 -0.88 10.76 101.05 1.09 0.21 16 8 N -0.70 -9.05 4.56 -54.24 -0.25 -9.30 16 9 C 0.51 8.38 6.31 -11.59 -0.07 8.31 16 10 O -0.51 -8.38 10.32 5.49 0.06 -8.32 16 11 C 0.49 10.09 7.73 -11.59 -0.09 10.00 16 12 O -0.52 -12.11 15.93 5.49 0.09 -12.02 16 13 N -0.57 -12.02 2.97 -173.01 -0.51 -12.53 16 14 C 0.07 1.30 5.98 -3.72 -0.02 1.28 16 15 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 16 C -0.11 -2.34 5.10 -26.69 -0.14 -2.48 16 17 C 0.04 1.06 2.26 -91.43 -0.21 0.85 16 18 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 19 C -0.52 -14.24 8.56 -34.44 -0.29 -14.54 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.88 -25.63 11.41 55.43 0.63 -24.99 16 23 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.11 2.67 5.44 -3.49 -0.02 2.65 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.80 5.65 -51.93 -0.29 0.51 16 30 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.41 5.41 8.09 -40.82 -0.33 5.08 16 39 H 0.13 2.18 4.31 -54.79 -0.24 1.94 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.12 3.45 5.15 -51.93 -0.27 3.18 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -30.86 380.27 -9.24 -40.11 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.81 Total: 6.22 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 0.20 Total: 3.69 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.13 Total: -46.83 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.14 Total: -20.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.36 Total: -4.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.86 -9.24 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334146875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.008 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds