Wall clock time and date at job start Tue Mar 31 2020 16:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 H 1.08996 * 109.46901 * 54.99702 * 3 2 1 5 5 C 1.52997 * 109.47135 * 174.99522 * 3 2 1 6 6 S 1.81401 * 109.47106 * 184.99791 * 5 3 2 7 7 C 1.81402 * 102.99984 * 180.02562 * 6 5 3 8 8 N 1.46498 * 109.46765 * 294.99527 * 3 2 1 9 9 C 1.34775 * 120.00024 * 85.00572 * 8 3 2 10 10 O 1.21354 * 120.00128 * 0.26719 * 9 8 3 11 11 C 1.49452 * 120.00212 * 179.97438 * 9 8 3 12 12 O 1.21343 * 120.00038 * 6.17870 * 11 9 8 13 13 N 1.34778 * 120.00124 * 186.17936 * 11 9 8 14 14 C 1.46929 * 120.62989 * 7.95667 * 13 11 9 15 15 C 1.53185 * 108.77846 * 233.58891 * 14 13 11 16 16 C 1.53039 * 109.31144 * 305.36635 * 15 14 13 17 17 C 1.53036 * 109.53814 * 61.36598 * 16 15 14 18 18 H 1.09007 * 109.49854 * 58.61770 * 17 16 15 19 19 C 1.50700 * 109.50128 * 178.67987 * 17 16 15 20 20 H 1.08000 * 119.99597 * 0.02562 * 19 17 16 21 21 C 1.37880 * 120.00442 * 179.97438 * 19 17 16 22 22 N 1.31510 * 119.99859 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00166 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46936 * 60.00312 * 23 21 19 25 25 H 1.48494 * 109.47406 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47251 * 300.00556 * 23 21 19 27 27 C 1.46917 * 120.63098 * 187.68481 * 13 11 9 28 28 H 1.09000 * 109.47373 * 300.00590 * 1 2 3 29 29 H 1.09004 * 109.46730 * 60.00496 * 1 2 3 30 30 H 1.08997 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47373 * 239.99410 * 2 1 3 32 32 H 1.09004 * 109.46416 * 119.99950 * 2 1 3 33 33 H 1.08998 * 109.47394 * 305.00087 * 5 3 2 34 34 H 1.09006 * 109.47209 * 65.00055 * 5 3 2 35 35 H 1.08995 * 109.47111 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46636 * 299.99710 * 7 6 5 37 37 H 1.08994 * 109.47394 * 59.99943 * 7 6 5 38 38 H 0.96995 * 120.00317 * 264.99388 * 8 3 2 39 39 H 1.09003 * 109.58918 * 353.38017 * 14 13 11 40 40 H 1.09008 * 109.58165 * 113.65780 * 14 13 11 41 41 H 1.08997 * 109.49685 * 65.31944 * 15 14 13 42 42 H 1.09004 * 109.49890 * 185.42003 * 15 14 13 43 43 H 1.09002 * 109.46301 * 181.38407 * 16 15 14 44 44 H 1.09001 * 109.46381 * 301.35958 * 16 15 14 45 45 H 0.96997 * 120.00054 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58534 * 246.19720 * 27 13 11 47 47 H 1.09002 * 109.58706 * 6.62117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1258 6 16 4.1573 3.1523 0.2745 7 6 5.9549 2.9504 0.4101 8 7 1.6525 2.0973 -1.2519 9 6 0.4353 2.6643 -1.3671 10 8 -0.3379 2.6367 -0.4322 11 6 0.0402 3.3329 -2.6440 12 8 0.7679 3.2688 -3.6129 13 7 -1.1244 4.0071 -2.7194 14 6 -1.9325 4.2425 -1.5150 15 6 -3.3561 3.7377 -1.7699 16 6 -3.9079 4.3973 -3.0358 17 6 -3.0374 4.0129 -4.2343 18 1 -3.0252 2.9283 -4.3422 19 6 -3.6001 4.6365 -5.4855 20 1 -4.4897 5.2465 -5.4317 21 6 -2.9788 4.4291 -6.6988 22 7 -1.8953 3.6866 -6.7643 23 14 -3.6761 5.2026 -8.2495 24 1 -3.6908 6.6802 -8.1021 25 1 -2.8310 4.8292 -9.4121 26 1 -5.0611 4.7131 -8.4673 27 6 -1.6072 4.5256 -4.0064 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 3.8570 0.8800 1.0114 34 1 4.0030 0.9834 -0.7595 35 1 6.4242 3.9294 0.5064 36 1 6.1876 2.3483 1.2885 37 1 6.3329 2.4520 -0.4825 38 1 2.2720 2.1230 -1.9978 39 1 -1.4988 3.7032 -0.6728 40 1 -1.9550 5.3095 -1.2930 41 1 -3.3405 2.6557 -1.9006 42 1 -3.9902 3.9930 -0.9208 43 1 -4.9299 4.0586 -3.2059 44 1 -3.8999 5.4805 -2.9141 45 1 -1.4584 3.5404 -7.6178 46 1 -1.6060 5.6154 -3.9849 47 1 -0.9590 4.1732 -4.8087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334146876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:07 Heat of formation + Delta-G solvation = -66.213433 kcal Electronic energy + Delta-G solvation = -27100.132843 eV Core-core repulsion = 23409.445271 eV Total energy + Delta-G solvation = -3690.687572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63095 -38.59196 -36.84399 -36.38629 -33.27626 -32.38246 -31.66897 -30.37550 -29.68800 -29.17301 -25.98214 -24.97030 -24.16121 -22.85978 -21.75377 -20.88622 -20.21421 -18.72721 -17.31118 -16.90895 -16.47927 -16.24947 -15.91430 -15.41598 -14.82225 -14.58845 -14.44945 -14.22601 -14.13802 -13.91339 -13.72741 -13.35109 -13.27019 -13.10845 -12.99422 -12.73056 -12.54799 -12.19206 -12.01055 -11.73566 -11.59552 -11.29861 -11.27327 -10.95186 -10.93622 -10.68289 -10.44339 -10.28739 -10.24612 -10.02012 -9.84853 -9.23122 -9.15254 -9.08006 -8.47526 -8.36443 -7.95983 -7.77079 -5.99839 -4.07795 1.30229 1.85664 2.25147 2.72306 3.33088 3.38529 3.40275 3.71001 3.98942 4.21586 4.43665 4.61958 4.75785 4.78217 4.79820 4.84417 4.98263 5.11611 5.26174 5.30782 5.36373 5.52919 5.68305 5.69633 5.73997 5.86688 5.92469 6.03364 6.15270 6.30627 6.38479 6.42998 6.63668 6.67040 6.79875 6.90910 7.02634 7.09943 7.21845 7.30117 7.61797 7.85898 7.98304 8.05268 8.21825 8.38509 8.63487 8.95934 9.57493 11.05816 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.003133 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.343461 B = 8936.013442 C = 9636.798422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.160 3.840 4 H 0.102 0.898 5 C -0.100 4.100 6 S -0.246 6.246 7 C -0.126 4.126 8 N -0.695 5.695 9 C 0.516 3.484 10 O -0.510 6.510 11 C 0.495 3.505 12 O -0.525 6.525 13 N -0.567 5.567 14 C 0.051 3.949 15 C -0.126 4.126 16 C -0.114 4.114 17 C 0.042 3.958 18 H 0.029 0.971 19 C -0.520 4.520 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.109 3.891 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.144 0.856 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.264 0.736 46 H 0.047 0.953 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.461 -6.023 16.824 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.054 3.946 4 H 0.120 0.880 5 C -0.248 4.248 6 S -0.020 6.020 7 C -0.295 4.295 8 N -0.349 5.349 9 C 0.299 3.701 10 O -0.388 6.388 11 C 0.276 3.724 12 O -0.402 6.402 13 N -0.299 5.299 14 C -0.071 4.071 15 C -0.165 4.165 16 C -0.151 4.151 17 C 0.023 3.977 18 H 0.047 0.953 19 C -0.558 4.558 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.011 4.011 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.160 0.840 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.878 -5.180 16.832 21.242 hybrid contribution 0.667 -0.632 -1.315 1.604 sum 12.545 -5.811 15.516 20.782 Atomic orbital electron populations 1.21815 0.94065 1.01109 1.03469 1.21963 0.97781 0.94644 1.02538 1.20824 0.90943 0.94463 0.88332 0.87994 1.23806 0.98496 0.96599 1.05933 1.87376 1.05784 1.11858 1.96959 1.23405 0.94836 1.06482 1.04755 1.45841 1.16368 1.56069 1.16596 1.20684 0.81885 0.78604 0.88878 1.90312 1.49555 1.58060 1.40823 1.19761 0.83320 0.81516 0.87814 1.90752 1.51007 1.60745 1.37678 1.48418 1.18887 1.51116 1.11494 1.23063 0.92636 1.01428 0.89957 1.21842 0.95465 1.00632 0.98512 1.21670 0.99386 0.99131 0.94944 1.19034 0.89704 0.97045 0.91918 0.95275 1.21067 1.11496 1.31895 0.91363 0.92337 1.25054 0.94931 0.94954 0.99095 1.69865 1.18611 1.37699 1.25844 0.86631 0.78940 0.79716 0.82563 1.20228 1.21261 1.20291 1.22553 0.99769 0.96614 0.82120 0.91842 0.92140 0.93174 0.91388 0.90855 0.88367 0.89227 0.88017 0.90598 0.90411 0.74946 0.83970 0.92851 0.92377 0.92371 0.93147 0.93278 0.92611 0.93450 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.52 37.16 0.32 -1.36 16 2 C -0.13 -1.15 5.61 -26.73 -0.15 -1.30 16 3 C 0.16 1.58 2.25 -67.93 -0.15 1.43 16 4 H 0.10 1.14 7.57 -51.93 -0.39 0.75 16 5 C -0.10 -0.76 5.46 37.16 0.20 -0.55 16 6 S -0.25 -2.40 22.11 -107.50 -2.38 -4.78 16 7 C -0.13 -0.81 10.76 101.05 1.09 0.28 16 8 N -0.70 -8.95 4.73 -54.24 -0.26 -9.21 16 9 C 0.52 8.42 6.34 -11.58 -0.07 8.34 16 10 O -0.51 -8.33 10.27 5.49 0.06 -8.27 16 11 C 0.49 10.11 7.74 -11.58 -0.09 10.02 16 12 O -0.52 -12.11 15.95 5.50 0.09 -12.02 16 13 N -0.57 -12.01 2.97 -173.01 -0.51 -12.52 16 14 C 0.05 0.92 6.26 -3.71 -0.02 0.90 16 15 C -0.13 -2.28 6.08 -26.62 -0.16 -2.44 16 16 C -0.11 -2.38 5.10 -26.69 -0.14 -2.51 16 17 C 0.04 1.06 2.26 -91.43 -0.21 0.85 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 19 C -0.52 -14.20 8.56 -34.44 -0.29 -14.50 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -25.59 11.41 55.43 0.63 -24.96 16 23 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.11 2.70 5.40 -3.49 -0.02 2.68 16 28 H 0.06 0.74 7.85 -51.93 -0.41 0.34 16 29 H 0.06 0.87 5.65 -51.93 -0.29 0.57 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.41 5.28 8.09 -40.82 -0.33 4.95 16 39 H 0.14 2.47 3.80 -56.68 -0.22 2.25 16 40 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.12 3.43 5.21 -51.93 -0.27 3.16 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -30.74 380.29 -9.25 -39.98 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.79 Total: 6.29 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 0.20 Total: 3.47 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.14 Total: -46.70 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.14 Total: -20.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.38 Total: -4.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.74 -9.25 -39.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334146876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.228 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds