Wall clock time and date at job start Tue Mar 31 2020 16:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 H 1.08996 * 109.46901 * 54.99702 * 3 2 1 5 5 C 1.52997 * 109.47135 * 174.99522 * 3 2 1 6 6 S 1.81401 * 109.47106 * 184.99791 * 5 3 2 7 7 C 1.81402 * 102.99984 * 180.02562 * 6 5 3 8 8 N 1.46498 * 109.46765 * 294.99527 * 3 2 1 9 9 C 1.34775 * 120.00024 * 85.00572 * 8 3 2 10 10 O 1.21354 * 120.00128 * 0.26719 * 9 8 3 11 11 C 1.49452 * 120.00212 * 179.97438 * 9 8 3 12 12 O 1.21343 * 120.00038 * 6.17870 * 11 9 8 13 13 N 1.34778 * 120.00124 * 186.17936 * 11 9 8 14 14 C 1.46929 * 120.62989 * 7.95667 * 13 11 9 15 15 C 1.53185 * 108.77846 * 233.58891 * 14 13 11 16 16 C 1.53039 * 109.31144 * 305.36635 * 15 14 13 17 17 C 1.53036 * 109.53814 * 61.36598 * 16 15 14 18 18 H 1.09007 * 109.49854 * 58.61770 * 17 16 15 19 19 C 1.50700 * 109.50128 * 178.67987 * 17 16 15 20 20 H 1.08000 * 119.99597 * 0.02562 * 19 17 16 21 21 C 1.37880 * 120.00442 * 179.97438 * 19 17 16 22 22 N 1.31510 * 119.99859 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00166 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46936 * 60.00312 * 23 21 19 25 25 H 1.48494 * 109.47406 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47251 * 300.00556 * 23 21 19 27 27 C 1.46917 * 120.63098 * 187.68481 * 13 11 9 28 28 H 1.09000 * 109.47373 * 300.00590 * 1 2 3 29 29 H 1.09004 * 109.46730 * 60.00496 * 1 2 3 30 30 H 1.08997 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47373 * 239.99410 * 2 1 3 32 32 H 1.09004 * 109.46416 * 119.99950 * 2 1 3 33 33 H 1.08998 * 109.47394 * 305.00087 * 5 3 2 34 34 H 1.09006 * 109.47209 * 65.00055 * 5 3 2 35 35 H 1.08995 * 109.47111 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46636 * 299.99710 * 7 6 5 37 37 H 1.08994 * 109.47394 * 59.99943 * 7 6 5 38 38 H 0.96995 * 120.00317 * 264.99388 * 8 3 2 39 39 H 1.09003 * 109.58918 * 353.38017 * 14 13 11 40 40 H 1.09008 * 109.58165 * 113.65780 * 14 13 11 41 41 H 1.08997 * 109.49685 * 65.31944 * 15 14 13 42 42 H 1.09004 * 109.49890 * 185.42003 * 15 14 13 43 43 H 1.09002 * 109.46301 * 181.38407 * 16 15 14 44 44 H 1.09001 * 109.46381 * 301.35958 * 16 15 14 45 45 H 0.96997 * 120.00054 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58534 * 246.19720 * 27 13 11 47 47 H 1.09002 * 109.58706 * 6.62117 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1258 6 16 4.1573 3.1523 0.2745 7 6 5.9549 2.9504 0.4101 8 7 1.6525 2.0973 -1.2519 9 6 0.4353 2.6643 -1.3671 10 8 -0.3379 2.6367 -0.4322 11 6 0.0402 3.3329 -2.6440 12 8 0.7679 3.2688 -3.6129 13 7 -1.1244 4.0071 -2.7194 14 6 -1.9325 4.2425 -1.5150 15 6 -3.3561 3.7377 -1.7699 16 6 -3.9079 4.3973 -3.0358 17 6 -3.0374 4.0129 -4.2343 18 1 -3.0252 2.9283 -4.3422 19 6 -3.6001 4.6365 -5.4855 20 1 -4.4897 5.2465 -5.4317 21 6 -2.9788 4.4291 -6.6988 22 7 -1.8953 3.6866 -6.7643 23 14 -3.6761 5.2026 -8.2495 24 1 -3.6908 6.6802 -8.1021 25 1 -2.8310 4.8292 -9.4121 26 1 -5.0611 4.7131 -8.4673 27 6 -1.6072 4.5256 -4.0064 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 3.8570 0.8800 1.0114 34 1 4.0030 0.9834 -0.7595 35 1 6.4242 3.9294 0.5064 36 1 6.1876 2.3483 1.2885 37 1 6.3329 2.4520 -0.4825 38 1 2.2720 2.1230 -1.9978 39 1 -1.4988 3.7032 -0.6728 40 1 -1.9550 5.3095 -1.2930 41 1 -3.3405 2.6557 -1.9006 42 1 -3.9902 3.9930 -0.9208 43 1 -4.9299 4.0586 -3.2059 44 1 -3.8999 5.4805 -2.9141 45 1 -1.4584 3.5404 -7.6178 46 1 -1.6060 5.6154 -3.9849 47 1 -0.9590 4.1732 -4.8087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334146876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:06 Heat of formation + Delta-G solvation = -85.624207 kcal Electronic energy + Delta-G solvation = -27100.974557 eV Core-core repulsion = 23409.445271 eV Total energy + Delta-G solvation = -3691.529286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02535 -40.05342 -38.50849 -37.52820 -35.21421 -33.57890 -33.28388 -31.55157 -31.14517 -29.69856 -27.67324 -26.82205 -25.14735 -24.19450 -23.49595 -21.87958 -21.65950 -20.39940 -18.89322 -18.25862 -17.97938 -17.42386 -17.22506 -16.79909 -16.52040 -16.12010 -15.71776 -15.46802 -14.95173 -14.93849 -14.79834 -14.74846 -14.52881 -14.43747 -14.19311 -13.78665 -13.77349 -13.64999 -13.45227 -12.99859 -12.92364 -12.85294 -12.53930 -12.38724 -12.29396 -12.16253 -12.04255 -11.78656 -11.70962 -11.58384 -11.15851 -10.97890 -10.93086 -10.54795 -10.29028 -9.89731 -9.52815 -8.68855 -8.12079 -6.28568 0.40412 0.68921 1.37941 1.42200 1.44882 1.51666 1.67273 2.20430 2.41469 2.59853 3.16175 3.33765 3.49809 3.97904 4.02170 4.15763 4.19872 4.29942 4.33683 4.36595 4.37151 4.46158 4.51469 4.59245 4.72625 4.74674 4.82025 4.84445 4.90944 4.91925 5.05378 5.08124 5.16042 5.20390 5.24153 5.30770 5.42671 5.47242 5.55535 5.58332 5.83773 5.93353 6.02856 6.30064 6.47087 6.77455 6.84588 7.02448 7.41071 8.91902 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.003133 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.343461 B = 8936.013442 C = 9636.798422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.159 3.841 4 H 0.093 0.907 5 C -0.080 4.080 6 S -0.324 6.324 7 C -0.108 4.108 8 N -0.680 5.680 9 C 0.526 3.474 10 O -0.510 6.510 11 C 0.484 3.516 12 O -0.561 6.561 13 N -0.575 5.575 14 C 0.050 3.950 15 C -0.118 4.118 16 C -0.107 4.107 17 C 0.041 3.959 18 H -0.011 1.011 19 C -0.537 4.537 20 H 0.062 0.938 21 C 0.011 3.989 22 N -0.915 5.915 23 Si 0.960 3.040 24 H -0.268 1.268 25 H -0.287 1.287 26 H -0.269 1.269 27 C 0.122 3.878 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.157 0.843 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.261 0.739 46 H 0.041 0.959 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.061 -6.627 18.827 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.055 3.945 4 H 0.111 0.889 5 C -0.228 4.228 6 S -0.098 6.098 7 C -0.277 4.277 8 N -0.332 5.332 9 C 0.307 3.693 10 O -0.389 6.389 11 C 0.267 3.733 12 O -0.440 6.440 13 N -0.307 5.307 14 C -0.070 4.070 15 C -0.156 4.156 16 C -0.145 4.145 17 C 0.022 3.978 18 H 0.007 0.993 19 C -0.576 4.576 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.553 5.553 23 Si 0.785 3.215 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.194 1.194 27 C 0.001 3.999 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.252 0.748 39 H 0.173 0.827 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.485 -5.797 18.882 23.367 hybrid contribution 0.540 -0.487 -1.904 2.038 sum 13.025 -6.284 16.979 22.303 Atomic orbital electron populations 1.21785 0.96024 1.01181 1.01461 1.21953 0.95877 0.93953 1.04466 1.21062 0.92778 0.94647 0.86061 0.88912 1.23756 0.96213 0.94897 1.07943 1.87661 1.09972 1.14980 1.97212 1.23410 0.91131 1.07126 1.05993 1.45854 1.14735 1.54765 1.17838 1.19766 0.83210 0.79257 0.87045 1.90282 1.49874 1.58649 1.40062 1.20585 0.82625 0.80908 0.89226 1.90717 1.52026 1.61784 1.39488 1.48445 1.19714 1.51294 1.11200 1.23306 0.92307 1.02560 0.88831 1.21799 0.95877 0.99598 0.98344 1.21568 0.98705 0.99766 0.94461 1.18959 0.90955 0.94346 0.93525 0.99269 1.21466 1.11671 1.31870 0.92566 0.91957 1.25889 0.95140 0.95396 1.02411 1.70048 1.19902 1.39085 1.26269 0.85584 0.78353 0.79097 0.78478 1.19299 1.21233 1.19402 1.22009 0.98848 0.95955 0.83122 0.92324 0.95563 0.92129 0.90822 0.87455 0.85343 0.87945 0.87799 0.88786 0.89572 0.74846 0.82671 0.91491 0.93493 0.88469 0.92793 0.92558 0.92960 0.94053 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.52 71.98 0.61 -2.53 16 2 C -0.12 -1.85 5.61 30.59 0.17 -1.68 16 3 C 0.16 2.82 2.25 44.99 0.10 2.92 16 4 H 0.09 1.90 7.57 -2.39 -0.02 1.88 16 5 C -0.08 -0.99 5.46 71.98 0.39 -0.59 16 6 S -0.32 -5.90 22.11 -56.49 -1.25 -7.15 16 7 C -0.11 -1.13 10.76 113.37 1.22 0.09 16 8 N -0.68 -17.18 4.73 -443.88 -2.10 -19.28 16 9 C 0.53 17.25 6.34 87.27 0.55 17.80 16 10 O -0.51 -16.41 10.27 -3.26 -0.03 -16.44 16 11 C 0.48 20.53 7.74 87.27 0.68 21.20 16 12 O -0.56 -27.28 15.95 -3.23 -0.05 -27.34 16 13 N -0.58 -25.09 2.97 -819.65 -2.43 -27.53 16 14 C 0.05 1.78 6.26 86.36 0.54 2.32 16 15 C -0.12 -4.12 6.08 30.67 0.19 -3.94 16 16 C -0.11 -4.47 5.10 30.62 0.16 -4.31 16 17 C 0.04 2.16 2.26 -11.32 -0.03 2.13 16 18 H -0.01 -0.65 8.14 -2.38 -0.02 -0.66 16 19 C -0.54 -30.08 8.56 25.60 0.22 -29.86 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.01 0.63 5.30 84.66 0.45 1.08 16 22 N -0.91 -55.32 11.41 21.45 0.24 -55.08 16 23 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.12 6.32 5.40 86.51 0.47 6.79 16 28 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 29 H 0.03 0.73 5.65 -2.39 -0.01 0.72 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.41 10.53 8.09 -92.71 -0.75 9.78 16 39 H 0.16 5.22 3.80 -77.65 -0.30 4.92 16 40 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 43 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.08 4.97 5.21 -2.39 -0.01 4.95 16 Total: -1.00 -70.87 380.29 2.06 -68.82 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.07 Total: 26.11 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.72 Total: 11.42 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -4.28 Total: -101.88 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.08 Total: -43.78 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -1.25 Total: -7.15 kcal Total: -70.87 2.06 -68.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334146876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.806 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds