Wall clock time and date at job start Tue Mar 31 2020 16:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47450 * 87.99773 * 3 2 1 5 5 C 1.46500 * 119.99648 * 269.99628 * 4 3 2 6 6 C 1.52998 * 109.47366 * 269.99594 * 5 4 3 7 7 C 1.52992 * 117.50145 * 243.62452 * 6 5 4 8 8 C 1.52995 * 60.00196 * 252.50901 * 7 6 5 9 9 C 1.34779 * 120.00243 * 89.99168 * 4 3 2 10 10 O 1.21581 * 119.99969 * 179.97438 * 9 4 3 11 11 N 1.34774 * 119.99602 * 0.02562 * 9 4 3 12 12 C 1.46508 * 119.99681 * 179.97438 * 11 9 4 13 13 C 1.50699 * 109.47169 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96224 * 270.02412 * 13 12 11 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99807 * 13 12 11 28 28 H 4.40643 * 5.51431 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47581 * 327.98955 * 3 2 1 30 30 H 1.09006 * 109.46588 * 207.99634 * 3 2 1 31 31 H 1.09001 * 109.47101 * 30.00125 * 5 4 3 32 32 H 1.09007 * 109.46844 * 149.99510 * 5 4 3 33 33 H 1.09004 * 115.54674 * 29.33455 * 6 5 4 34 34 H 1.09004 * 117.49843 * 359.97438 * 7 6 5 35 35 H 1.09002 * 117.50245 * 145.01907 * 7 6 5 36 36 H 1.08998 * 117.49834 * 252.51203 * 8 7 6 37 37 H 1.09000 * 117.49979 * 107.48964 * 8 7 6 38 38 H 0.96993 * 120.00552 * 359.97438 * 11 9 4 39 39 H 1.09004 * 109.46757 * 59.99773 * 12 11 9 40 40 H 1.08998 * 109.46890 * 300.00426 * 12 11 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 42 42 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 44 44 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0474 -1.3803 5 6 3.3792 -1.3394 -2.0261 6 6 4.8244 -1.7717 -1.7704 7 6 5.7479 -1.9021 -2.9832 8 6 5.2458 -3.1566 -2.2657 9 6 3.3584 1.0970 -2.0562 10 8 3.7642 1.0571 -3.2016 11 7 3.1336 2.2855 -1.4619 12 6 3.3776 3.5295 -2.1963 13 6 3.0515 4.7064 -1.3134 14 6 1.7719 5.2318 -1.3071 15 6 1.4687 6.3113 -0.4979 16 6 2.4416 6.8642 0.3117 17 6 3.7284 6.3427 0.3035 18 8 4.6884 6.8877 1.0936 19 6 4.3611 8.0066 1.7710 20 1 3.3495 8.3831 1.7352 21 6 5.3234 8.6738 2.5135 22 7 6.5557 8.2155 2.5567 23 14 4.8702 10.2245 3.4515 24 1 3.8071 9.9120 4.4401 25 1 6.0682 10.7427 4.1594 26 1 4.3751 11.2516 2.5001 27 6 4.0302 5.2588 -0.5111 28 1 -1.0500 0.0002 -0.0001 29 1 3.0098 -0.8706 0.5447 30 1 3.0088 0.9083 0.4824 31 1 2.6988 -2.0855 -1.6157 32 1 3.2122 -1.2466 -3.0993 33 1 5.2639 -1.4152 -0.8387 34 1 5.3258 -1.6803 -3.9634 35 1 6.7953 -1.6312 -2.8497 36 1 5.9627 -3.7110 -1.6602 37 1 4.4934 -3.7598 -2.7738 38 1 2.8102 2.3174 -0.5480 39 1 2.7474 3.5561 -3.0854 40 1 4.4255 3.5771 -2.4923 41 1 1.0081 4.7980 -1.9355 42 1 0.4689 6.7195 -0.4955 43 1 2.2028 7.7040 0.9473 44 1 7.2290 8.6825 3.0759 45 1 5.0291 4.8483 -0.5168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341061688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:03 Heat of formation + Delta-G solvation = 58.922641 kcal Electronic energy + Delta-G solvation = -26623.891481 eV Core-core repulsion = 22803.186265 eV Total energy + Delta-G solvation = -3820.705216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.38123 -39.12525 -37.69179 -36.77919 -35.89473 -34.46030 -32.83263 -32.34096 -30.80421 -29.17751 -28.25793 -26.84739 -25.54325 -24.73026 -22.51155 -21.72347 -21.20739 -20.79021 -20.25128 -18.93172 -18.12901 -17.54901 -16.97688 -16.73309 -15.87593 -15.44591 -15.19079 -14.79539 -14.51542 -14.36687 -14.26709 -14.18131 -13.98248 -13.64171 -13.58560 -13.44480 -12.71646 -12.64553 -12.37718 -12.21341 -11.84202 -11.67192 -11.66226 -11.37349 -10.94166 -10.88286 -10.82262 -10.71043 -10.59986 -10.50477 -10.49767 -10.16234 -10.03814 -9.41972 -9.17012 -8.89504 -8.74062 -8.25442 -7.33282 -6.49596 -4.09212 1.83640 2.21299 2.28791 2.58244 3.01066 3.09943 3.11531 3.14009 3.20685 3.61113 3.92088 3.96357 4.16591 4.51708 4.54862 4.72483 4.77416 4.89017 4.93397 5.06049 5.12775 5.19417 5.25808 5.31818 5.42775 5.51923 5.54988 5.68608 5.77062 5.77979 5.85326 5.90849 5.95242 6.02280 6.07130 6.24371 6.30088 6.55287 6.56730 6.81631 6.81852 6.99420 7.19415 7.27169 7.35121 7.35806 7.70507 7.92373 7.94549 8.59449 8.95660 9.64336 10.68103 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.002450 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.487159 B =11427.647048 C =12039.986274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.215 4.215 3 C 0.218 3.782 4 N -0.625 5.625 5 C 0.165 3.835 6 C -0.171 4.171 7 C -0.168 4.168 8 C -0.179 4.179 9 C 0.708 3.292 10 O -0.585 6.585 11 N -0.735 5.735 12 C 0.186 3.814 13 C -0.073 4.073 14 C -0.193 4.193 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.170 4.170 28 H 0.217 0.783 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.398 0.602 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.271 0.729 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 -18.133 -5.015 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.216 4.216 3 C 0.095 3.905 4 N -0.361 5.361 5 C 0.042 3.958 6 C -0.191 4.191 7 C -0.205 4.205 8 C -0.217 4.217 9 C 0.410 3.590 10 O -0.462 6.462 11 N -0.391 5.391 12 C 0.062 3.938 13 C -0.073 4.073 14 C -0.213 4.213 15 C -0.095 4.095 16 C -0.245 4.245 17 C 0.096 3.904 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.190 4.190 28 H 0.234 0.766 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.234 0.766 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.780 -18.128 -5.728 20.542 hybrid contribution -0.679 0.937 1.099 1.596 sum -8.459 -17.191 -4.629 19.711 Atomic orbital electron populations 1.24987 0.95971 1.00363 0.98240 1.23619 0.95015 1.01099 1.01888 1.18350 0.83682 1.04532 0.83926 1.47087 1.69871 1.05471 1.13651 1.20880 0.93355 0.82548 0.98999 1.22762 0.96712 1.00108 0.99505 1.22979 0.99623 1.00948 0.96926 1.22947 1.03771 0.90597 1.04368 1.15862 0.78452 0.80281 0.84411 1.90905 1.52711 1.86044 1.16577 1.45418 1.71522 1.04287 1.17863 1.20011 1.01458 0.79364 0.92918 1.19281 0.93817 0.96447 0.97797 1.20483 0.95805 1.00466 1.04531 1.20741 0.98009 0.95383 0.95333 1.21236 0.93548 1.04715 1.05013 1.19322 0.88719 0.92462 0.89872 1.83981 1.34825 1.38675 1.50461 1.21272 0.97256 1.01176 1.27279 0.89107 1.25288 0.94612 0.99086 0.97442 1.70023 1.01760 1.39168 1.38641 0.85785 0.78209 0.80148 0.79320 1.19492 1.20244 1.19470 1.20090 0.99610 0.99103 1.00183 0.76601 0.87621 0.88194 0.90349 0.89524 0.87669 0.88432 0.89034 0.88848 0.88826 0.76634 0.91152 0.90938 0.87558 0.87319 0.85486 0.91896 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 19.25 29.55 0.57 -1.06 16 2 C -0.21 -2.14 13.68 -37.12 -0.51 -2.65 16 3 C 0.22 1.95 5.65 -6.83 -0.04 1.91 16 4 N -0.62 -6.98 2.43 -182.77 -0.44 -7.42 16 5 C 0.17 1.61 5.69 -4.04 -0.02 1.59 16 6 C -0.17 -1.59 6.01 -90.63 -0.54 -2.13 16 7 C -0.17 -1.62 10.18 -26.74 -0.27 -1.90 16 8 C -0.18 -1.36 10.25 -26.73 -0.27 -1.64 16 9 C 0.71 10.30 8.27 -86.92 -0.72 9.58 16 10 O -0.58 -10.39 15.92 5.29 0.08 -10.31 16 11 N -0.74 -10.26 5.41 -66.41 -0.36 -10.62 16 12 C 0.19 2.83 5.80 -5.19 -0.03 2.80 16 13 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 14 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 15 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 16 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 17 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 18 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 19 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 20 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.86 13.67 55.48 0.76 -24.11 16 23 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 28 H 0.22 1.30 7.80 -54.09 -0.42 0.88 16 29 H 0.11 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.10 0.87 6.36 -51.93 -0.33 0.54 16 31 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.09 0.98 7.15 -51.92 -0.37 0.61 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 5.11 6.19 -40.82 -0.25 4.86 16 39 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 40 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -32.44 392.02 -9.19 -41.63 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.14 Total: 10.42 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.97 Total: -15.70 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.05 Total: -42.15 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.44 -9.19 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341061688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.554 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds