Wall clock time and date at job start Tue Mar 31 2020 16:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47450 * 87.99773 * 3 2 1 5 5 C 1.46500 * 119.99648 * 269.99628 * 4 3 2 6 6 C 1.52998 * 109.47366 * 269.99594 * 5 4 3 7 7 C 1.52992 * 117.50145 * 243.62452 * 6 5 4 8 8 C 1.52995 * 60.00196 * 252.50901 * 7 6 5 9 9 C 1.34779 * 120.00243 * 89.99168 * 4 3 2 10 10 O 1.21581 * 119.99969 * 179.97438 * 9 4 3 11 11 N 1.34774 * 119.99602 * 0.02562 * 9 4 3 12 12 C 1.46508 * 119.99681 * 179.97438 * 11 9 4 13 13 C 1.50699 * 109.47169 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96224 * 270.02412 * 13 12 11 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99807 * 13 12 11 28 28 H 4.40643 * 5.51431 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47581 * 327.98955 * 3 2 1 30 30 H 1.09006 * 109.46588 * 207.99634 * 3 2 1 31 31 H 1.09001 * 109.47101 * 30.00125 * 5 4 3 32 32 H 1.09007 * 109.46844 * 149.99510 * 5 4 3 33 33 H 1.09004 * 115.54674 * 29.33455 * 6 5 4 34 34 H 1.09004 * 117.49843 * 359.97438 * 7 6 5 35 35 H 1.09002 * 117.50245 * 145.01907 * 7 6 5 36 36 H 1.08998 * 117.49834 * 252.51203 * 8 7 6 37 37 H 1.09000 * 117.49979 * 107.48964 * 8 7 6 38 38 H 0.96993 * 120.00552 * 359.97438 * 11 9 4 39 39 H 1.09004 * 109.46757 * 59.99773 * 12 11 9 40 40 H 1.08998 * 109.46890 * 300.00426 * 12 11 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 42 42 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 44 44 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0474 -1.3803 5 6 3.3792 -1.3394 -2.0261 6 6 4.8244 -1.7717 -1.7704 7 6 5.7479 -1.9021 -2.9832 8 6 5.2458 -3.1566 -2.2657 9 6 3.3584 1.0970 -2.0562 10 8 3.7642 1.0571 -3.2016 11 7 3.1336 2.2855 -1.4619 12 6 3.3776 3.5295 -2.1963 13 6 3.0515 4.7064 -1.3134 14 6 1.7719 5.2318 -1.3071 15 6 1.4687 6.3113 -0.4979 16 6 2.4416 6.8642 0.3117 17 6 3.7284 6.3427 0.3035 18 8 4.6884 6.8877 1.0936 19 6 4.3611 8.0066 1.7710 20 1 3.3495 8.3831 1.7352 21 6 5.3234 8.6738 2.5135 22 7 6.5557 8.2155 2.5567 23 14 4.8702 10.2245 3.4515 24 1 3.8071 9.9120 4.4401 25 1 6.0682 10.7427 4.1594 26 1 4.3751 11.2516 2.5001 27 6 4.0302 5.2588 -0.5111 28 1 -1.0500 0.0002 -0.0001 29 1 3.0098 -0.8706 0.5447 30 1 3.0088 0.9083 0.4824 31 1 2.6988 -2.0855 -1.6157 32 1 3.2122 -1.2466 -3.0993 33 1 5.2639 -1.4152 -0.8387 34 1 5.3258 -1.6803 -3.9634 35 1 6.7953 -1.6312 -2.8497 36 1 5.9627 -3.7110 -1.6602 37 1 4.4934 -3.7598 -2.7738 38 1 2.8102 2.3174 -0.5480 39 1 2.7474 3.5561 -3.0854 40 1 4.4255 3.5771 -2.4923 41 1 1.0081 4.7980 -1.9355 42 1 0.4689 6.7195 -0.4955 43 1 2.2028 7.7040 0.9473 44 1 7.2290 8.6825 3.0759 45 1 5.0291 4.8483 -0.5168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341061688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:02 Heat of formation + Delta-G solvation = 40.768287 kcal Electronic energy + Delta-G solvation = -26624.678712 eV Core-core repulsion = 22803.186265 eV Total energy + Delta-G solvation = -3821.492447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47717 -40.75950 -38.74243 -38.22036 -36.80130 -35.74924 -34.28223 -33.59801 -32.21930 -30.78954 -29.07913 -27.95920 -27.30241 -26.04269 -23.27479 -23.19475 -22.52738 -21.94985 -21.19962 -20.04768 -19.39470 -18.93557 -18.48403 -17.74105 -16.93162 -16.72677 -16.41753 -16.29828 -16.10869 -15.55807 -15.46700 -15.28448 -15.08447 -14.88516 -14.82529 -14.41459 -14.28047 -13.90500 -13.69383 -13.42101 -13.36303 -13.00378 -12.65391 -12.52161 -12.38155 -12.34893 -12.28088 -12.14361 -11.71333 -11.36002 -11.31504 -11.21649 -11.04546 -10.85813 -10.79850 -10.30679 -9.78573 -9.72961 -9.04065 -8.46570 -6.15182 0.35521 0.69827 1.34660 1.36045 1.46608 1.52018 1.88095 2.03172 2.15136 2.18054 2.76256 2.89563 3.06184 3.19828 3.39698 3.49432 3.81127 3.81530 3.99733 4.08499 4.09395 4.19804 4.30324 4.38069 4.41264 4.48816 4.52272 4.53184 4.66465 4.72445 4.75896 4.82535 5.01042 5.04412 5.06990 5.11564 5.24128 5.25125 5.28298 5.37913 5.45119 5.61653 5.69993 5.71344 5.83047 6.01701 6.15724 6.66702 6.85208 6.98097 7.47561 7.78122 8.76280 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.002450 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.487159 B =11427.647048 C =12039.986274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.244 4.244 3 C 0.216 3.784 4 N -0.618 5.618 5 C 0.166 3.834 6 C -0.178 4.178 7 C -0.190 4.190 8 C -0.153 4.153 9 C 0.705 3.295 10 O -0.622 6.622 11 N -0.731 5.731 12 C 0.193 3.807 13 C -0.059 4.059 14 C -0.168 4.168 15 C -0.069 4.069 16 C -0.233 4.233 17 C 0.113 3.887 18 O -0.231 6.231 19 C -0.413 4.413 20 H 0.104 0.896 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.258 1.258 27 C -0.179 4.179 28 H 0.242 0.758 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.404 0.596 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.272 0.728 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 -19.284 -5.162 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.245 4.245 3 C 0.094 3.906 4 N -0.353 5.353 5 C 0.043 3.957 6 C -0.197 4.197 7 C -0.227 4.227 8 C -0.190 4.190 9 C 0.406 3.594 10 O -0.502 6.502 11 N -0.387 5.387 12 C 0.069 3.931 13 C -0.059 4.059 14 C -0.187 4.187 15 C -0.087 4.087 16 C -0.253 4.253 17 C 0.063 3.937 18 O -0.138 6.138 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.182 1.182 27 C -0.199 4.199 28 H 0.259 0.741 29 H 0.150 0.850 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.241 0.759 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.109 -19.332 -5.877 23.058 hybrid contribution 0.132 1.049 0.923 1.404 sum -10.977 -18.283 -4.954 21.893 Atomic orbital electron populations 1.25741 0.96866 0.99404 0.96996 1.23877 0.95566 1.02087 1.03003 1.18540 0.83665 1.05799 0.82627 1.47125 1.68916 1.04869 1.14367 1.20981 0.94294 0.82349 0.98056 1.22746 0.96205 1.01738 0.99011 1.22974 0.99491 1.03551 0.96692 1.23023 1.03477 0.89665 1.02875 1.16020 0.78233 0.81021 0.84121 1.90881 1.54392 1.86666 1.18310 1.45252 1.71568 1.03854 1.18036 1.19871 1.01191 0.79188 0.92839 1.19427 0.93493 0.96458 0.96557 1.20969 0.95879 0.98897 1.02975 1.21147 0.98892 0.94916 0.93710 1.21375 0.93341 1.04808 1.05737 1.19834 0.89407 0.93677 0.90775 1.83949 1.37012 1.39923 1.52883 1.21786 0.98077 1.01550 1.27507 0.87898 1.26576 0.94340 1.02693 0.98398 1.70177 1.03266 1.41509 1.40946 0.84664 0.78243 0.75445 0.77995 1.17978 1.19855 1.18231 1.20202 1.00200 0.98820 1.00690 0.74119 0.84986 0.88294 0.87768 0.91372 0.87817 0.89749 0.89524 0.87512 0.87426 0.75880 0.89966 0.92026 0.83776 0.83329 0.86031 0.91873 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.24 -4.28 13.68 31.12 0.43 -3.86 16 3 C 0.22 3.45 5.65 84.57 0.48 3.93 16 4 N -0.62 -13.00 2.43 -850.44 -2.07 -15.07 16 5 C 0.17 3.01 5.69 86.38 0.49 3.50 16 6 C -0.18 -3.09 6.01 -10.80 -0.06 -3.16 16 7 C -0.19 -3.66 10.18 30.59 0.31 -3.35 16 8 C -0.15 -2.04 10.25 30.59 0.31 -1.72 16 9 C 0.70 19.95 8.27 179.05 1.48 21.43 16 10 O -0.62 -22.10 15.92 -3.97 -0.06 -22.16 16 11 N -0.73 -19.50 5.41 -482.29 -2.61 -22.12 16 12 C 0.19 5.62 5.80 85.63 0.50 6.11 16 13 C -0.06 -1.91 5.25 -19.88 -0.10 -2.01 16 14 C -0.17 -4.91 9.70 22.30 0.22 -4.69 16 15 C -0.07 -2.17 10.04 22.25 0.22 -1.95 16 16 C -0.23 -9.58 9.17 22.39 0.21 -9.37 16 17 C 0.11 5.44 6.65 22.58 0.15 5.59 16 18 O -0.23 -13.60 9.76 -22.74 -0.22 -13.82 16 19 C -0.41 -23.51 9.49 67.92 0.64 -22.87 16 20 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 21 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 22 N -0.92 -56.05 13.67 21.61 0.30 -55.75 16 23 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 27 C -0.18 -7.40 9.65 22.39 0.22 -7.18 16 28 H 0.24 2.05 7.80 -4.42 -0.03 2.01 16 29 H 0.13 1.39 8.07 -2.39 -0.02 1.37 16 30 H 0.10 1.59 6.36 -2.38 -0.02 1.58 16 31 H 0.10 1.34 8.07 -2.39 -0.02 1.33 16 32 H 0.07 1.51 7.15 -2.38 -0.02 1.50 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.83 8.03 -2.38 -0.02 1.81 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.40 9.78 6.19 -92.71 -0.57 9.21 16 39 H 0.08 2.25 8.09 -2.38 -0.02 2.23 16 40 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 42 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 43 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -75.42 392.02 5.17 -70.25 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.43 Total: 36.23 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 7.38 Total: -21.63 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -4.38 Total: -92.94 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.29 Total: -35.99 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -75.42 5.17 -70.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341061688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.017 kcal (2) G-P(sol) polarization free energy of solvation -75.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds