Wall clock time and date at job start Tue Mar 31 2020 15:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47062 * 2 1 4 4 H 1.08996 * 109.46944 * 304.77951 * 3 2 1 5 5 C 1.50697 * 109.47037 * 184.78002 * 3 2 1 6 6 H 1.08001 * 119.99955 * 245.45772 * 5 3 2 7 7 C 1.37873 * 119.99946 * 65.44951 * 5 3 2 8 8 N 1.31514 * 120.00065 * 9.49697 * 7 5 3 9 9 Si 1.86799 * 120.00022 * 189.49040 * 7 5 3 10 10 H 1.48503 * 109.47382 * 84.99766 * 9 7 5 11 11 H 1.48503 * 109.47329 * 205.00119 * 9 7 5 12 12 H 1.48507 * 109.47009 * 324.99788 * 9 7 5 13 13 O 1.45199 * 109.46935 * 64.77927 * 3 2 1 14 14 C 1.34777 * 116.99932 * 270.00038 * 13 3 2 15 15 O 1.21532 * 120.00058 * 359.97438 * 14 13 3 16 16 C 1.47145 * 119.99582 * 180.02562 * 14 13 3 17 17 C 1.38046 * 126.82329 * 0.19578 * 16 14 13 18 18 N 1.34121 * 107.87505 * 180.25763 * 17 16 14 19 19 C 1.46498 * 125.15026 * 179.69927 * 18 17 16 20 20 C 1.53002 * 109.47393 * 125.00236 * 19 18 17 21 21 N 1.39759 * 109.69752 * 359.72331 * 18 17 16 22 22 C 1.31354 * 109.09946 * 359.97438 * 21 18 17 23 23 C 1.48287 * 126.51360 * 180.02562 * 22 21 18 24 24 C 1.39380 * 120.12754 * 325.02479 * 23 22 21 25 25 C 1.38006 * 119.87217 * 179.97438 * 24 23 22 26 26 C 1.38328 * 120.12923 * 359.97438 * 25 24 23 27 27 C 1.38332 * 120.24879 * 0.02562 * 26 25 24 28 28 C 1.38003 * 120.13020 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46856 * 299.99757 * 1 2 3 31 31 H 1.08995 * 109.47116 * 59.99736 * 1 2 3 32 32 H 1.09003 * 109.46856 * 240.00243 * 2 1 3 33 33 H 1.08995 * 109.47116 * 120.00263 * 2 1 3 34 34 H 0.96999 * 119.99891 * 179.97438 * 8 7 5 35 35 H 1.08000 * 126.06055 * 359.97438 * 17 16 14 36 36 H 1.08998 * 109.47317 * 245.00365 * 19 18 17 37 37 H 1.09001 * 109.47461 * 5.00144 * 19 18 17 38 38 H 1.08998 * 109.46995 * 300.00327 * 20 19 18 39 39 H 1.09001 * 109.46892 * 59.99560 * 20 19 18 40 40 H 1.08999 * 109.47311 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.06853 * 359.95452 * 24 23 22 42 42 H 1.08007 * 119.93913 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.87917 * 179.72802 * 26 25 24 44 44 H 1.08000 * 119.93549 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.06978 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6085 1.9805 -0.8441 5 6 3.5423 1.4442 -0.1184 6 1 4.1479 1.8095 0.6978 7 6 4.1437 0.9792 -1.2686 8 7 3.4143 0.7103 -2.3294 9 14 5.9944 0.7313 -1.3204 10 1 6.3300 -0.6080 -0.7735 11 1 6.4674 0.8252 -2.7249 12 1 6.6573 1.7797 -0.5038 13 8 1.6514 2.0933 1.2385 14 6 0.4633 2.7296 1.2486 15 8 -0.2287 2.7407 0.2496 16 6 0.0047 3.4118 2.4690 17 6 0.6743 3.4919 3.6735 18 7 -0.0892 4.1948 4.5231 19 6 0.2583 4.5021 5.9127 20 6 0.1914 6.0147 6.1327 21 7 -1.2668 4.5892 3.8821 22 6 -1.2526 4.1454 2.6459 23 6 -2.3101 4.3432 1.6252 24 6 -3.6515 4.3657 2.0030 25 6 -4.6313 4.5506 1.0488 26 6 -4.2842 4.7139 -0.2802 27 6 -2.9544 4.6924 -0.6609 28 6 -1.9661 4.5082 0.2846 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8375 0.3835 -3.1388 35 1 1.6396 3.0607 3.8941 36 1 -0.4453 4.0062 6.5814 37 1 1.2682 4.1490 6.1213 38 1 0.8949 6.5106 5.4640 39 1 -0.8185 6.3678 5.9241 40 1 0.4495 6.2433 7.1667 41 1 -3.9238 4.2385 3.0403 42 1 -5.6711 4.5687 1.3404 43 1 -5.0544 4.8539 -1.0242 44 1 -2.6892 4.8199 -1.7000 45 1 -0.9283 4.4920 -0.0136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348269282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:05 Heat of formation + Delta-G solvation = 7.542924 kcal Electronic energy + Delta-G solvation = -27973.756851 eV Core-core repulsion = 24150.823644 eV Total energy + Delta-G solvation = -3822.933207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12684 -39.12531 -38.65622 -35.64635 -34.57239 -33.39887 -31.77192 -31.43035 -30.72921 -30.11383 -28.98987 -27.17979 -24.31156 -23.81232 -22.87244 -22.37214 -21.77780 -20.51478 -19.64491 -19.17142 -17.63055 -16.72391 -16.42653 -16.21769 -15.78909 -15.37293 -15.01334 -14.93353 -14.58033 -14.39886 -14.02652 -13.66956 -13.28048 -13.14409 -12.85711 -12.77088 -12.70819 -12.36587 -12.25715 -12.05433 -11.66392 -11.50835 -11.29246 -11.21531 -11.08031 -11.02745 -10.91147 -10.63666 -10.59835 -10.21114 -9.81040 -9.76777 -9.53619 -9.28146 -8.77879 -8.71426 -8.59600 -8.42133 -8.14169 -6.17968 -4.21365 1.15648 1.63828 1.68977 2.25803 2.47249 3.25672 3.31377 3.33785 3.79514 3.80867 4.06864 4.23018 4.38145 4.60121 4.66195 4.74761 4.92157 5.07620 5.15190 5.17148 5.22563 5.31765 5.41761 5.53581 5.56790 5.68941 5.82488 5.86692 5.98814 6.09354 6.25643 6.29415 6.32801 6.37225 6.49335 6.65871 6.77156 6.80966 6.86802 6.91291 7.03520 7.19372 7.20437 7.28859 7.58974 7.62481 7.72689 7.94276 8.18838 8.73245 8.99093 9.42726 10.90968 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.004006 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.281555 B = 6988.610017 C = 8880.502265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.223 3.777 4 H 0.055 0.945 5 C -0.524 4.524 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.905 3.095 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 O -0.356 6.356 14 C 0.530 3.470 15 O -0.511 6.511 16 C -0.262 4.262 17 C 0.125 3.875 18 N -0.367 5.367 19 C 0.127 3.873 20 C -0.166 4.166 21 N -0.288 5.288 22 C 0.171 3.829 23 C -0.029 4.029 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.109 4.109 27 C -0.128 4.128 28 C -0.048 4.048 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.194 0.806 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 7.933 13.276 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.562 4.562 6 H 0.085 0.915 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.732 3.268 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.272 6.272 14 C 0.374 3.626 15 O -0.403 6.403 16 C -0.275 4.275 17 C -0.023 4.023 18 N -0.147 5.147 19 C 0.006 3.994 20 C -0.224 4.224 21 N -0.107 5.107 22 C 0.003 3.997 23 C -0.031 4.031 24 C -0.109 4.109 25 C -0.157 4.157 26 C -0.127 4.127 27 C -0.147 4.147 28 C -0.068 4.068 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.210 0.790 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.741 8.521 13.847 19.486 hybrid contribution 1.484 -0.861 -0.671 1.842 sum -9.257 7.660 13.176 17.832 Atomic orbital electron populations 1.21851 0.97933 0.98971 1.01252 1.21910 0.93069 0.99471 1.02031 1.20631 0.94845 0.88420 0.79102 0.92704 1.20976 0.89633 1.43722 1.01868 0.91469 1.24870 0.98894 0.95233 0.94660 1.69987 1.35924 1.43973 1.02192 0.86403 0.84315 0.78837 0.77251 1.20305 1.21097 1.19739 1.86512 1.33813 1.62760 1.44161 1.19726 0.80557 0.76234 0.86040 1.90747 1.55529 1.59067 1.34910 1.20658 0.98003 1.14018 0.94829 1.23207 0.97080 0.92786 0.89238 1.48326 1.13964 1.41153 1.11222 1.21803 1.02092 0.98160 0.77308 1.22063 1.03956 0.93945 1.02425 1.77249 1.03243 1.23445 1.06782 1.21818 0.92666 0.94106 0.91108 1.17671 0.90222 1.03967 0.91199 1.21108 0.91608 0.98690 0.99449 1.20931 0.98843 1.02719 0.93200 1.21227 0.96370 0.99159 0.95979 1.21106 0.92605 1.01247 0.99703 1.21688 1.01552 0.92573 0.90937 0.95011 0.94503 0.92553 0.89416 0.93857 0.92436 0.78963 0.89501 0.88120 0.91858 0.91019 0.90635 0.86149 0.86219 0.86334 0.85777 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.13 -3.09 5.54 -26.73 -0.15 -3.23 16 3 C 0.22 5.80 2.12 -27.88 -0.06 5.74 16 4 H 0.06 1.60 7.10 -51.93 -0.37 1.23 16 5 C -0.52 -14.40 8.82 -34.44 -0.30 -14.71 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C 0.07 1.80 5.16 -17.82 -0.09 1.71 16 8 N -0.88 -24.94 12.16 55.43 0.67 -24.27 16 9 Si 0.90 20.78 29.55 -169.99 -5.02 15.76 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 O -0.36 -8.30 9.65 -40.70 -0.39 -8.70 16 14 C 0.53 11.30 6.26 34.35 0.21 11.51 16 15 O -0.51 -11.59 9.65 -19.29 -0.19 -11.78 16 16 C -0.26 -4.69 6.26 -102.96 -0.65 -5.33 16 17 C 0.13 1.77 11.23 -16.62 -0.19 1.59 16 18 N -0.37 -4.66 3.63 -60.84 -0.22 -4.88 16 19 C 0.13 1.00 7.17 -4.04 -0.03 0.97 16 20 C -0.17 -1.22 10.07 37.16 0.37 -0.85 16 21 N -0.29 -4.39 12.28 34.58 0.42 -3.97 16 22 C 0.17 2.91 6.94 -80.55 -0.56 2.35 16 23 C -0.03 -0.47 5.73 -104.91 -0.60 -1.07 16 24 C -0.09 -1.27 9.76 -39.24 -0.38 -1.66 16 25 C -0.14 -1.74 10.03 -39.63 -0.40 -2.13 16 26 C -0.11 -1.38 10.04 -39.51 -0.40 -1.77 16 27 C -0.13 -1.88 10.03 -39.63 -0.40 -2.28 16 28 C -0.05 -0.82 7.77 -39.24 -0.31 -1.13 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.80 6.06 -51.93 -0.31 0.48 16 31 H 0.06 1.30 7.78 -51.93 -0.40 0.90 16 32 H 0.09 2.30 6.81 -51.93 -0.35 1.95 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.15 2.77 5.68 -52.49 -0.30 2.47 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -31.87 376.48 -9.00 -40.87 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.35 Total: 4.40 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.60 Total: -13.11 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.88 Total: -33.12 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.58 Total: -20.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.87 -9.00 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348269282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.413 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds