Wall clock time and date at job start Tue Mar 31 2020 15:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47062 * 2 1 4 4 H 1.08996 * 109.46944 * 304.77951 * 3 2 1 5 5 C 1.50697 * 109.47037 * 184.78002 * 3 2 1 6 6 H 1.08001 * 119.99955 * 245.45772 * 5 3 2 7 7 C 1.37873 * 119.99946 * 65.44951 * 5 3 2 8 8 N 1.31514 * 120.00065 * 9.49697 * 7 5 3 9 9 Si 1.86799 * 120.00022 * 189.49040 * 7 5 3 10 10 H 1.48503 * 109.47382 * 84.99766 * 9 7 5 11 11 H 1.48503 * 109.47329 * 205.00119 * 9 7 5 12 12 H 1.48507 * 109.47009 * 324.99788 * 9 7 5 13 13 O 1.45199 * 109.46935 * 64.77927 * 3 2 1 14 14 C 1.34777 * 116.99932 * 270.00038 * 13 3 2 15 15 O 1.21532 * 120.00058 * 359.97438 * 14 13 3 16 16 C 1.47145 * 119.99582 * 180.02562 * 14 13 3 17 17 C 1.38046 * 126.82329 * 0.19578 * 16 14 13 18 18 N 1.34121 * 107.87505 * 180.25763 * 17 16 14 19 19 C 1.46498 * 125.15026 * 179.69927 * 18 17 16 20 20 C 1.53002 * 109.47393 * 125.00236 * 19 18 17 21 21 N 1.39759 * 109.69752 * 359.72331 * 18 17 16 22 22 C 1.31354 * 109.09946 * 359.97438 * 21 18 17 23 23 C 1.48287 * 126.51360 * 180.02562 * 22 21 18 24 24 C 1.39380 * 120.12754 * 325.02479 * 23 22 21 25 25 C 1.38006 * 119.87217 * 179.97438 * 24 23 22 26 26 C 1.38328 * 120.12923 * 359.97438 * 25 24 23 27 27 C 1.38332 * 120.24879 * 0.02562 * 26 25 24 28 28 C 1.38003 * 120.13020 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46856 * 299.99757 * 1 2 3 31 31 H 1.08995 * 109.47116 * 59.99736 * 1 2 3 32 32 H 1.09003 * 109.46856 * 240.00243 * 2 1 3 33 33 H 1.08995 * 109.47116 * 120.00263 * 2 1 3 34 34 H 0.96999 * 119.99891 * 179.97438 * 8 7 5 35 35 H 1.08000 * 126.06055 * 359.97438 * 17 16 14 36 36 H 1.08998 * 109.47317 * 245.00365 * 19 18 17 37 37 H 1.09001 * 109.47461 * 5.00144 * 19 18 17 38 38 H 1.08998 * 109.46995 * 300.00327 * 20 19 18 39 39 H 1.09001 * 109.46892 * 59.99560 * 20 19 18 40 40 H 1.08999 * 109.47311 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.06853 * 359.95452 * 24 23 22 42 42 H 1.08007 * 119.93913 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.87917 * 179.72802 * 26 25 24 44 44 H 1.08000 * 119.93549 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.06978 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6085 1.9805 -0.8441 5 6 3.5423 1.4442 -0.1184 6 1 4.1479 1.8095 0.6978 7 6 4.1437 0.9792 -1.2686 8 7 3.4143 0.7103 -2.3294 9 14 5.9944 0.7313 -1.3204 10 1 6.3300 -0.6080 -0.7735 11 1 6.4674 0.8252 -2.7249 12 1 6.6573 1.7797 -0.5038 13 8 1.6514 2.0933 1.2385 14 6 0.4633 2.7296 1.2486 15 8 -0.2287 2.7407 0.2496 16 6 0.0047 3.4118 2.4690 17 6 0.6743 3.4919 3.6735 18 7 -0.0892 4.1948 4.5231 19 6 0.2583 4.5021 5.9127 20 6 0.1914 6.0147 6.1327 21 7 -1.2668 4.5892 3.8821 22 6 -1.2526 4.1454 2.6459 23 6 -2.3101 4.3432 1.6252 24 6 -3.6515 4.3657 2.0030 25 6 -4.6313 4.5506 1.0488 26 6 -4.2842 4.7139 -0.2802 27 6 -2.9544 4.6924 -0.6609 28 6 -1.9661 4.5082 0.2846 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8375 0.3835 -3.1388 35 1 1.6396 3.0607 3.8941 36 1 -0.4453 4.0062 6.5814 37 1 1.2682 4.1490 6.1213 38 1 0.8949 6.5106 5.4640 39 1 -0.8185 6.3678 5.9241 40 1 0.4495 6.2433 7.1667 41 1 -3.9238 4.2385 3.0403 42 1 -5.6711 4.5687 1.3404 43 1 -5.0544 4.8539 -1.0242 44 1 -2.6892 4.8199 -1.7000 45 1 -0.9283 4.4920 -0.0136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348269282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:04 Heat of formation + Delta-G solvation = -8.867167 kcal Electronic energy + Delta-G solvation = -27974.468446 eV Core-core repulsion = 24150.823644 eV Total energy + Delta-G solvation = -3823.644802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31767 -40.81109 -39.78249 -37.41738 -35.50134 -35.37186 -33.45206 -32.74802 -31.86199 -31.34191 -30.05654 -29.15088 -25.57109 -25.16945 -24.51801 -23.51123 -22.87010 -22.10283 -21.13942 -20.53369 -19.08765 -18.28678 -18.21589 -17.34186 -17.13321 -16.89153 -16.44224 -16.27515 -15.95658 -15.69171 -14.94610 -14.89559 -14.80510 -14.68616 -14.27382 -13.95619 -13.87715 -13.68621 -13.42456 -13.35484 -13.16203 -12.99115 -12.97454 -12.79705 -12.54284 -12.43037 -12.24805 -12.11865 -12.03699 -11.81426 -11.64122 -11.39394 -11.10265 -10.87235 -10.71609 -10.50138 -9.92298 -9.75694 -9.30453 -8.25985 -6.38693 -0.01130 0.39975 0.56211 1.18605 1.31574 1.43458 1.45634 1.55644 2.15263 2.26736 2.47900 2.93690 3.05450 3.19722 3.50579 3.88888 4.05193 4.07958 4.15596 4.18791 4.31843 4.33757 4.36984 4.39210 4.40056 4.45184 4.57762 4.65072 4.72746 4.78904 4.84431 4.91119 4.98036 5.10391 5.16328 5.19853 5.25490 5.27057 5.40169 5.55154 5.57156 5.63888 5.65117 5.69757 5.84190 5.95942 6.09934 6.21463 6.40089 6.67953 7.15443 7.34116 8.83453 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.004006 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.281555 B = 6988.610017 C = 8880.502265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 C 0.228 3.772 4 H 0.011 0.989 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.975 3.025 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.265 1.265 13 O -0.360 6.360 14 C 0.524 3.476 15 O -0.533 6.533 16 C -0.306 4.306 17 C 0.148 3.852 18 N -0.352 5.352 19 C 0.114 3.886 20 C -0.162 4.162 21 N -0.292 5.292 22 C 0.160 3.840 23 C -0.052 4.052 24 C -0.094 4.094 25 C -0.130 4.130 26 C -0.102 4.102 27 C -0.141 4.141 28 C -0.075 4.075 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.269 0.731 35 H 0.223 0.777 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.130 0.870 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 7.948 15.779 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C 0.175 3.825 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.799 3.201 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.189 1.189 13 O -0.277 6.277 14 C 0.371 3.629 15 O -0.425 6.425 16 C -0.319 4.319 17 C -0.003 4.003 18 N -0.131 5.131 19 C -0.005 4.005 20 C -0.219 4.219 21 N -0.112 5.112 22 C -0.007 4.007 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.121 4.121 27 C -0.159 4.159 28 C -0.095 4.095 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.239 0.761 36 H 0.124 0.876 37 H 0.153 0.847 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.148 0.852 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.155 8.562 16.394 21.599 hybrid contribution 1.521 -0.756 -1.351 2.171 sum -9.634 7.806 15.042 19.494 Atomic orbital electron populations 1.21679 0.96252 1.00370 1.00183 1.21749 0.94471 0.98177 1.01255 1.20306 0.94369 0.88930 0.78915 0.97114 1.21284 0.90413 1.44534 1.02371 0.91439 1.25777 1.03863 0.94414 0.93937 1.70117 1.38070 1.44346 1.02771 0.85311 0.78128 0.79249 0.77428 1.19124 1.20688 1.18882 1.86479 1.35293 1.63403 1.42551 1.20301 0.79593 0.75859 0.87187 1.90743 1.55867 1.59788 1.36122 1.20555 0.99854 1.16577 0.94898 1.23552 0.97420 0.91339 0.88029 1.48819 1.12587 1.39213 1.12474 1.22388 1.04597 0.98827 0.74642 1.22043 1.02520 0.93313 1.04066 1.77204 1.04528 1.23363 1.06118 1.21962 0.92671 0.94271 0.91814 1.17874 0.91475 1.05076 0.90933 1.21332 0.90895 0.98495 1.00612 1.21382 1.00250 1.00519 0.92617 1.21605 0.95919 0.97457 0.97088 1.21301 0.93485 1.01482 0.99651 1.21494 1.00534 0.95210 0.92213 0.92179 0.94610 0.94556 0.91604 0.92896 0.92201 0.76084 0.87612 0.84697 0.93068 0.92848 0.87505 0.84935 0.82461 0.82854 0.85190 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.56 71.98 0.62 -5.16 16 2 C -0.12 -5.96 5.54 30.60 0.17 -5.79 16 3 C 0.23 12.50 2.12 29.85 0.06 12.56 16 4 H 0.01 0.69 7.10 -2.39 -0.02 0.67 16 5 C -0.55 -31.00 8.82 25.60 0.23 -30.78 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 7 C 0.02 1.12 5.16 84.65 0.44 1.56 16 8 N -0.92 -53.29 12.16 21.45 0.26 -53.03 16 9 Si 0.98 42.76 29.55 68.60 2.03 44.78 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 O -0.36 -17.55 9.65 -56.88 -0.55 -18.10 16 14 C 0.52 23.69 6.26 70.16 0.44 24.13 16 15 O -0.53 -26.18 9.65 19.73 0.19 -25.99 16 16 C -0.31 -11.30 6.26 -18.79 -0.12 -11.41 16 17 C 0.15 4.03 11.23 84.30 0.95 4.98 16 18 N -0.35 -8.35 3.63 -346.41 -1.26 -9.60 16 19 C 0.11 1.42 7.17 86.38 0.62 2.04 16 20 C -0.16 -1.98 10.07 71.98 0.72 -1.26 16 21 N -0.29 -8.78 12.28 -44.51 -0.55 -9.33 16 22 C 0.16 5.61 6.94 44.08 0.31 5.92 16 23 C -0.05 -1.78 5.73 -20.05 -0.11 -1.89 16 24 C -0.09 -2.62 9.76 22.49 0.22 -2.40 16 25 C -0.13 -2.96 10.03 22.24 0.22 -2.74 16 26 C -0.10 -2.43 10.04 22.31 0.22 -2.21 16 27 C -0.14 -4.28 10.03 22.24 0.22 -4.05 16 28 C -0.07 -2.75 7.77 22.49 0.17 -2.57 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.03 1.60 6.06 -2.39 -0.01 1.58 16 31 H 0.04 1.75 7.78 -2.39 -0.02 1.73 16 32 H 0.07 3.58 6.81 -2.39 -0.02 3.57 16 33 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.22 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.14 0.84 8.05 -2.39 -0.02 0.82 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 42 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 45 H 0.11 4.77 5.68 -2.91 -0.02 4.75 16 Total: -1.00 -74.09 376.48 6.50 -67.59 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.99 Total: 22.76 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 5.38 Total: -19.08 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.54 Total: -71.96 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.36 Total: -44.09 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.09 6.50 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348269282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.723 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds