Wall clock time and date at job start Tue Mar 31 2020 16:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46707 * 2 1 4 4 N 1.46494 * 109.47268 * 120.00229 * 2 1 3 5 5 C 1.46501 * 120.00292 * 294.97964 * 4 2 1 6 6 C 1.50701 * 109.47105 * 263.06321 * 5 4 2 7 7 H 1.08000 * 120.00111 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00068 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00296 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99775 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46715 * 90.00183 * 10 8 6 12 12 H 1.48500 * 109.47140 * 209.99916 * 10 8 6 13 13 H 1.48499 * 109.47363 * 330.00273 * 10 8 6 14 14 C 1.34778 * 120.00195 * 114.98509 * 4 2 1 15 15 O 1.21599 * 119.99658 * 3.77775 * 14 4 2 16 16 C 1.47451 * 120.00286 * 183.78651 * 14 4 2 17 17 N 1.31289 * 125.70612 * 353.18390 * 16 14 4 18 18 C 1.33458 * 108.70811 * 180.02562 * 17 16 14 19 19 C 1.35241 * 107.83322 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.38917 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47118 * 90.00317 * 20 19 18 22 22 C 1.38243 * 120.00134 * 89.99985 * 21 20 19 23 23 C 1.38235 * 119.99931 * 180.02562 * 22 21 20 24 24 C 1.38228 * 120.00331 * 359.95654 * 23 22 21 25 25 C 1.38237 * 119.99992 * 0.27488 * 24 23 22 26 26 C 1.38236 * 120.00020 * 269.97741 * 21 20 19 27 27 O 1.34308 * 107.21877 * 0.23231 * 19 18 17 28 28 H 1.08997 * 109.47033 * 299.99392 * 1 2 3 29 29 H 1.09000 * 109.47189 * 60.00143 * 1 2 3 30 30 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47033 * 240.00607 * 2 1 3 32 32 H 1.09001 * 109.47087 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47650 * 300.00110 * 3 2 1 34 34 H 1.09005 * 109.47197 * 60.00546 * 3 2 1 35 35 H 1.09000 * 109.46720 * 23.05843 * 5 4 2 36 36 H 1.08994 * 109.47522 * 143.05775 * 5 4 2 37 37 H 0.97000 * 120.00263 * 180.02562 * 9 8 6 38 38 H 1.07997 * 126.08168 * 179.97438 * 18 17 16 39 39 H 1.08999 * 109.46999 * 330.00263 * 20 19 18 40 40 H 1.08996 * 109.46961 * 210.00333 * 20 19 18 41 41 H 1.08002 * 119.99721 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99524 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00034 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00169 * 179.72833 * 25 24 23 45 45 H 1.07990 * 120.00332 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7575 -0.1294 2.5239 6 6 2.9571 0.6606 2.9799 7 1 3.8270 0.7367 2.3444 8 6 2.9441 1.2864 4.2085 9 7 3.9907 1.9762 4.6063 10 14 1.4391 1.1555 5.3074 11 1 1.5730 -0.0308 6.1907 12 1 1.3247 2.3810 6.1382 13 1 0.2233 1.0120 4.4668 14 6 2.7079 -1.8424 1.0750 15 8 2.9840 -2.2724 -0.0284 16 6 3.1271 -2.5809 2.2803 17 7 3.0021 -2.1616 3.5181 18 6 3.4909 -3.0946 4.3377 19 6 3.9313 -4.1233 3.5783 20 6 4.5626 -5.3973 4.0779 21 6 3.4901 -6.4276 4.3211 22 6 3.1128 -7.2857 3.3050 23 6 2.1287 -8.2305 3.5279 24 6 1.5224 -8.3179 4.7671 25 6 1.8963 -7.4567 5.7817 26 6 2.8839 -6.5151 5.5603 27 8 3.7061 -3.7954 2.2954 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 0.8876 0.5257 2.4769 36 1 1.5656 -0.9381 3.2290 37 1 3.9817 2.4161 5.4707 38 1 3.5283 -3.0380 5.4155 39 1 5.0935 -5.1988 5.0089 40 1 5.2640 -5.7718 3.3324 41 1 3.5864 -7.2173 2.3367 42 1 1.8337 -8.9005 2.7339 43 1 0.7538 -9.0563 4.9413 44 1 1.4195 -7.5221 6.7486 45 1 3.1785 -5.8448 6.3541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350612442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:19 Heat of formation + Delta-G solvation = 29.616230 kcal Electronic energy + Delta-G solvation = -28085.611917 eV Core-core repulsion = 24263.635880 eV Total energy + Delta-G solvation = -3821.976037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.00734 -39.43760 -39.20853 -36.05434 -34.48302 -33.97479 -32.73701 -31.58621 -31.05465 -29.76927 -27.85386 -26.77478 -26.68686 -23.64022 -22.78409 -22.52646 -22.15286 -21.35212 -20.54391 -18.76397 -17.13057 -16.97755 -16.78772 -16.51253 -16.27858 -15.48779 -15.29959 -15.12115 -14.44357 -14.40737 -13.94761 -13.65891 -13.57654 -13.40201 -13.20684 -13.11694 -12.59244 -12.57827 -12.46347 -12.23334 -11.96718 -11.76052 -11.67897 -11.38344 -11.16538 -10.99337 -10.94069 -10.83283 -10.65875 -10.25872 -10.11667 -9.75439 -9.48629 -9.37742 -9.08031 -8.96264 -8.53161 -8.40630 -7.83555 -6.01778 -3.97320 1.07367 1.24383 1.40493 2.55064 2.74881 3.31752 3.37302 3.39505 3.57954 3.74282 3.92301 4.45495 4.58240 4.59768 4.61659 4.83595 4.92718 4.96263 5.13799 5.28939 5.31214 5.34479 5.35637 5.47613 5.48768 5.55297 5.69708 5.77103 5.86851 5.96589 6.01017 6.07775 6.17800 6.24519 6.28088 6.32712 6.34331 6.43648 6.49997 6.59849 6.65279 6.82454 6.95746 7.07140 7.35385 7.64684 7.92571 8.06824 8.50935 8.67294 9.00904 9.59671 11.11706 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.004021 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.610246 B = 6962.593133 C = 8104.474245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.555 5.555 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.072 0.928 8 C 0.081 3.919 9 N -0.901 5.901 10 Si 0.871 3.129 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.268 1.268 14 C 0.614 3.386 15 O -0.553 6.553 16 C 0.148 3.852 17 N -0.378 5.378 18 C -0.035 4.035 19 C -0.039 4.039 20 C 0.008 3.992 21 C -0.085 4.085 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.107 4.107 27 O -0.173 6.173 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.066 0.934 37 H 0.262 0.738 38 H 0.183 0.817 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -16.187 0.279 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.210 4.210 4 N -0.285 5.285 5 C 0.072 3.928 6 C -0.541 4.541 7 H 0.090 0.910 8 C -0.121 4.121 9 N -0.540 5.540 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.217 1.217 13 H -0.193 1.193 14 C 0.399 3.601 15 O -0.432 6.432 16 C -0.057 4.057 17 N -0.110 5.110 18 C -0.178 4.178 19 C -0.094 4.094 20 C -0.029 4.029 21 C -0.085 4.085 22 C -0.126 4.126 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.125 4.125 27 O -0.057 6.057 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.200 0.800 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.528 -15.696 -0.096 16.337 hybrid contribution -0.315 -0.517 0.847 1.041 sum -4.843 -16.214 0.750 16.938 Atomic orbital electron populations 1.22165 0.95376 1.01901 1.02383 1.21053 0.93585 0.93973 0.87929 1.22057 1.02239 0.94645 1.02049 1.47773 1.50848 1.20028 1.09894 1.20387 0.97869 0.95889 0.78653 1.21078 1.00635 1.29544 1.02889 0.91031 1.24675 0.95576 0.94758 0.97046 1.69895 1.29271 1.34067 1.20792 0.86941 0.84131 0.77543 0.81504 1.19931 1.21665 1.19316 1.15960 0.79090 0.81119 0.83965 1.90764 1.57546 1.69310 1.25543 1.25429 1.01685 0.83474 0.95114 1.71076 1.15020 1.25806 0.99082 1.23369 1.02703 0.90296 1.01441 1.23515 1.05312 0.99224 0.81394 1.19013 0.94884 0.86635 1.02398 1.19703 0.98164 0.96407 0.94248 1.21126 0.97524 0.95232 0.98675 1.21144 0.96703 0.98766 0.97233 1.21174 0.99880 0.99363 0.93528 1.21148 0.97526 0.95879 0.99302 1.21094 0.96369 0.98391 0.96680 1.84384 1.59849 1.32695 1.28814 0.91830 0.91644 0.92788 0.88927 0.91999 0.92731 0.90651 0.95096 0.91639 0.92845 0.80020 0.87288 0.88762 0.85839 0.86012 0.86167 0.85958 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.26 37.16 0.34 -2.05 16 2 C 0.14 2.47 3.22 -67.93 -0.22 2.25 16 3 C -0.15 -2.67 8.66 37.16 0.32 -2.35 16 4 N -0.55 -11.87 2.38 -168.73 -0.40 -12.27 16 5 C 0.19 4.44 2.98 -5.19 -0.02 4.43 16 6 C -0.50 -13.47 7.98 -34.44 -0.27 -13.74 16 7 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 8 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 9 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 10 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 14 C 0.61 13.83 7.60 -12.51 -0.10 13.73 16 15 O -0.55 -13.00 16.44 0.09 0.00 -13.00 16 16 C 0.15 3.23 7.78 -14.03 -0.11 3.12 16 17 N -0.38 -8.25 6.94 -11.79 -0.08 -8.33 16 18 C -0.04 -0.62 11.80 -17.91 -0.21 -0.83 16 19 C -0.04 -0.63 6.63 -35.37 -0.23 -0.86 16 20 C 0.01 0.09 5.90 -29.04 -0.17 -0.08 16 21 C -0.09 -0.96 5.12 -104.62 -0.54 -1.49 16 22 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 23 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 24 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.11 -1.11 9.70 -39.58 -0.38 -1.50 16 27 O -0.17 -3.38 10.79 -0.17 0.00 -3.38 16 28 H 0.06 0.98 6.91 -51.93 -0.36 0.62 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.67 6.91 -51.93 -0.36 1.32 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.45 7.09 -51.93 -0.37 1.08 16 35 H 0.03 0.70 5.54 -51.93 -0.29 0.41 16 36 H 0.07 1.56 4.83 -51.93 -0.25 1.31 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.18 2.69 8.06 -52.49 -0.42 2.26 16 39 H 0.11 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -33.07 375.41 -8.26 -41.33 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.28 Total: 3.32 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.26 Total: -3.53 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.29 Total: -46.58 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.00 Total: -16.38 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.07 -8.26 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350612442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.945 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds