Wall clock time and date at job start Tue Mar 31 2020 16:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46707 * 2 1 4 4 N 1.46494 * 109.47268 * 120.00229 * 2 1 3 5 5 C 1.46501 * 120.00292 * 294.97964 * 4 2 1 6 6 C 1.50701 * 109.47105 * 263.06321 * 5 4 2 7 7 H 1.08000 * 120.00111 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00068 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00296 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99775 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46715 * 90.00183 * 10 8 6 12 12 H 1.48500 * 109.47140 * 209.99916 * 10 8 6 13 13 H 1.48499 * 109.47363 * 330.00273 * 10 8 6 14 14 C 1.34778 * 120.00195 * 114.98509 * 4 2 1 15 15 O 1.21599 * 119.99658 * 3.77775 * 14 4 2 16 16 C 1.47451 * 120.00286 * 183.78651 * 14 4 2 17 17 N 1.31289 * 125.70612 * 353.18390 * 16 14 4 18 18 C 1.33458 * 108.70811 * 180.02562 * 17 16 14 19 19 C 1.35241 * 107.83322 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.38917 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47118 * 90.00317 * 20 19 18 22 22 C 1.38243 * 120.00134 * 89.99985 * 21 20 19 23 23 C 1.38235 * 119.99931 * 180.02562 * 22 21 20 24 24 C 1.38228 * 120.00331 * 359.95654 * 23 22 21 25 25 C 1.38237 * 119.99992 * 0.27488 * 24 23 22 26 26 C 1.38236 * 120.00020 * 269.97741 * 21 20 19 27 27 O 1.34308 * 107.21877 * 0.23231 * 19 18 17 28 28 H 1.08997 * 109.47033 * 299.99392 * 1 2 3 29 29 H 1.09000 * 109.47189 * 60.00143 * 1 2 3 30 30 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47033 * 240.00607 * 2 1 3 32 32 H 1.09001 * 109.47087 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47650 * 300.00110 * 3 2 1 34 34 H 1.09005 * 109.47197 * 60.00546 * 3 2 1 35 35 H 1.09000 * 109.46720 * 23.05843 * 5 4 2 36 36 H 1.08994 * 109.47522 * 143.05775 * 5 4 2 37 37 H 0.97000 * 120.00263 * 180.02562 * 9 8 6 38 38 H 1.07997 * 126.08168 * 179.97438 * 18 17 16 39 39 H 1.08999 * 109.46999 * 330.00263 * 20 19 18 40 40 H 1.08996 * 109.46961 * 210.00333 * 20 19 18 41 41 H 1.08002 * 119.99721 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99524 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00034 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00169 * 179.72833 * 25 24 23 45 45 H 1.07990 * 120.00332 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7575 -0.1294 2.5239 6 6 2.9571 0.6606 2.9799 7 1 3.8270 0.7367 2.3444 8 6 2.9441 1.2864 4.2085 9 7 3.9907 1.9762 4.6063 10 14 1.4391 1.1555 5.3074 11 1 1.5730 -0.0308 6.1907 12 1 1.3247 2.3810 6.1382 13 1 0.2233 1.0120 4.4668 14 6 2.7079 -1.8424 1.0750 15 8 2.9840 -2.2724 -0.0284 16 6 3.1271 -2.5809 2.2803 17 7 3.0021 -2.1616 3.5181 18 6 3.4909 -3.0946 4.3377 19 6 3.9313 -4.1233 3.5783 20 6 4.5626 -5.3973 4.0779 21 6 3.4901 -6.4276 4.3211 22 6 3.1128 -7.2857 3.3050 23 6 2.1287 -8.2305 3.5279 24 6 1.5224 -8.3179 4.7671 25 6 1.8963 -7.4567 5.7817 26 6 2.8839 -6.5151 5.5603 27 8 3.7061 -3.7954 2.2954 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 0.8876 0.5257 2.4769 36 1 1.5656 -0.9381 3.2290 37 1 3.9817 2.4161 5.4707 38 1 3.5283 -3.0380 5.4155 39 1 5.0935 -5.1988 5.0089 40 1 5.2640 -5.7718 3.3324 41 1 3.5864 -7.2173 2.3367 42 1 1.8337 -8.9005 2.7339 43 1 0.7538 -9.0563 4.9413 44 1 1.4195 -7.5221 6.7486 45 1 3.1785 -5.8448 6.3541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350612442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:18 Heat of formation + Delta-G solvation = 10.202502 kcal Electronic energy + Delta-G solvation = -28086.453760 eV Core-core repulsion = 24263.635880 eV Total energy + Delta-G solvation = -3822.817879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.49036 -40.96026 -40.12645 -37.73693 -36.00231 -34.98475 -34.66589 -33.24101 -31.79414 -30.94468 -29.79828 -28.01839 -27.92435 -25.12206 -24.42940 -23.71847 -23.30957 -22.50141 -21.80649 -20.34436 -19.01072 -18.57342 -18.11364 -18.02989 -17.58371 -16.82591 -16.29179 -16.10497 -15.95195 -15.87272 -15.57491 -15.09151 -14.90455 -14.44949 -14.40526 -14.28538 -14.15705 -14.00586 -13.81197 -13.39127 -13.33845 -13.09895 -13.00825 -12.70463 -12.60908 -12.40186 -12.33225 -12.13841 -11.94115 -11.89130 -11.75733 -11.51787 -11.42352 -11.08096 -10.59824 -9.97040 -9.83434 -9.68756 -9.53099 -8.15984 -6.15827 -0.19388 0.35288 0.48934 1.09166 1.26776 1.43021 1.45099 1.52107 2.09069 2.37309 2.44587 2.85885 3.02697 3.21602 3.66374 3.76394 3.88285 3.94230 3.98321 4.14700 4.19648 4.24499 4.29203 4.34048 4.43496 4.54774 4.59594 4.65706 4.73203 4.81332 4.85736 4.86615 4.95959 5.01652 5.06544 5.10450 5.15973 5.24376 5.35928 5.45113 5.54439 5.58402 5.60982 5.63951 5.68033 6.09279 6.15051 6.38005 6.56826 6.80657 6.97084 7.44814 9.01254 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.004021 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.610246 B = 6962.593133 C = 8104.474245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 C -0.144 4.144 4 N -0.557 5.557 5 C 0.206 3.794 6 C -0.490 4.490 7 H 0.021 0.979 8 C 0.029 3.971 9 N -0.951 5.951 10 Si 0.931 3.069 11 H -0.265 1.265 12 H -0.290 1.290 13 H -0.245 1.245 14 C 0.606 3.394 15 O -0.574 6.574 16 C 0.110 3.890 17 N -0.402 5.402 18 C -0.058 4.058 19 C -0.007 4.007 20 C 0.010 3.990 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.115 4.115 27 O -0.184 6.184 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.263 0.737 38 H 0.211 0.789 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 -17.759 1.417 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.201 4.201 4 N -0.287 5.287 5 C 0.084 3.916 6 C -0.528 4.528 7 H 0.039 0.961 8 C -0.168 4.168 9 N -0.592 5.592 10 Si 0.756 3.244 11 H -0.190 1.190 12 H -0.217 1.217 13 H -0.169 1.169 14 C 0.392 3.608 15 O -0.455 6.455 16 C -0.094 4.094 17 N -0.134 5.134 18 C -0.201 4.201 19 C -0.063 4.063 20 C -0.027 4.027 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.133 4.133 27 O -0.068 6.068 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.227 0.773 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.638 -17.276 1.003 18.534 hybrid contribution 0.446 -0.156 0.490 0.680 sum -6.192 -17.432 1.493 18.559 Atomic orbital electron populations 1.22108 0.92315 1.02523 1.03903 1.21386 0.95985 0.93502 0.86614 1.21988 1.00188 0.94841 1.03117 1.47889 1.50642 1.19886 1.10311 1.20119 0.96338 0.95462 0.79633 1.21059 1.00150 1.29530 1.02094 0.96102 1.25438 0.98556 0.94334 0.98488 1.70051 1.31880 1.35776 1.21507 0.85960 0.81085 0.77621 0.79756 1.19040 1.21661 1.16855 1.16212 0.78930 0.81464 0.84214 1.90722 1.58520 1.69981 1.26318 1.25185 1.04529 0.84728 0.94961 1.70924 1.15575 1.27327 0.99622 1.23868 1.03520 0.90147 1.02584 1.24478 1.01992 0.99951 0.79843 1.19332 0.95051 0.84376 1.03926 1.19718 0.98739 0.96723 0.94888 1.21316 0.98261 0.96015 0.98846 1.21420 0.96467 0.98813 0.98200 1.21527 0.99975 0.99585 0.93153 1.21494 0.97282 0.95474 1.00349 1.21375 0.96354 0.98838 0.96742 1.84391 1.59676 1.32033 1.30712 0.92118 0.88239 0.92620 0.89147 0.95104 0.88708 0.92391 0.93729 0.91491 0.92843 0.77257 0.84160 0.87571 0.85993 0.84471 0.83924 0.83851 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 9.26 71.98 0.67 -3.50 16 2 C 0.13 4.52 3.22 44.99 0.15 4.67 16 3 C -0.14 -5.05 8.66 71.98 0.62 -4.43 16 4 N -0.56 -24.24 2.38 -805.98 -1.91 -26.16 16 5 C 0.21 9.51 2.98 85.63 0.25 9.76 16 6 C -0.49 -26.99 7.98 25.60 0.20 -26.79 16 7 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 8 C 0.03 1.62 5.47 84.66 0.46 2.08 16 9 N -0.95 -58.01 13.96 21.45 0.30 -57.71 16 10 Si 0.93 42.40 27.47 68.60 1.88 44.28 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.25 -10.15 6.54 99.48 0.65 -9.50 16 14 C 0.61 28.18 7.60 86.67 0.66 28.84 16 15 O -0.57 -27.93 16.44 0.94 0.02 -27.91 16 16 C 0.11 4.90 7.78 87.20 0.68 5.57 16 17 N -0.40 -17.63 6.94 -305.19 -2.12 -19.75 16 18 C -0.06 -2.01 11.80 83.75 0.99 -1.02 16 19 C -0.01 -0.22 6.63 24.99 0.17 -0.06 16 20 C 0.01 0.20 5.90 29.10 0.17 0.37 16 21 C -0.10 -2.07 5.12 -19.87 -0.10 -2.17 16 22 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 23 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 24 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 25 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 26 C -0.12 -2.10 9.70 22.27 0.22 -1.88 16 27 O -0.18 -7.28 10.79 0.00 0.00 -7.28 16 28 H 0.06 1.72 6.91 -2.39 -0.02 1.70 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.09 3.28 6.91 -2.39 -0.02 3.26 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.22 7.09 -2.38 -0.02 2.21 16 35 H 0.04 1.95 5.54 -2.39 -0.01 1.94 16 36 H 0.07 3.16 4.83 -2.39 -0.01 3.14 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.21 5.76 8.06 -2.91 -0.02 5.74 16 39 H 0.14 1.98 8.09 -2.39 -0.02 1.96 16 40 H 0.11 1.93 8.09 -2.39 -0.02 1.91 16 41 H 0.12 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.14 2.02 8.06 -2.92 -0.02 2.00 16 Total: -1.00 -75.06 375.41 5.13 -69.93 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.94 Total: 21.51 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.02 Total: 3.08 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.73 Total: -103.62 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: 0.02 Total: -35.19 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -75.06 5.13 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350612442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.136 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds