Wall clock time and date at job start Tue Mar 31 2020 16:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 N 1.46500 * 109.47130 * 119.99670 * 2 1 3 5 5 C 1.46494 * 120.00342 * 300.00425 * 4 2 1 6 6 C 1.50702 * 109.46908 * 269.99689 * 5 4 2 7 7 H 1.07997 * 120.00094 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00090 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00036 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46983 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46994 * 119.99975 * 10 8 6 13 13 H 1.48500 * 109.46839 * 239.99608 * 10 8 6 14 14 C 1.34786 * 119.99598 * 120.00105 * 4 2 1 15 15 O 1.21280 * 119.99484 * 180.02562 * 14 4 2 16 16 C 1.50699 * 120.00060 * 0.02562 * 14 4 2 17 17 C 1.50695 * 109.47019 * 180.02562 * 16 14 4 18 18 C 1.36081 * 119.01793 * 125.00230 * 17 16 14 19 19 C 1.40808 * 118.81106 * 179.97438 * 18 17 16 20 20 C 1.40190 * 122.18918 * 180.02562 * 19 18 17 21 21 C 1.36262 * 119.48068 * 179.97438 * 20 19 18 22 22 C 1.39312 * 120.98264 * 0.02562 * 21 20 19 23 23 C 1.36263 * 121.05723 * 359.97438 * 22 21 20 24 24 C 1.40164 * 119.52784 * 0.27741 * 23 22 21 25 25 C 1.41066 * 122.05628 * 180.29010 * 24 23 22 26 26 O 1.35488 * 120.12731 * 359.44938 * 25 24 23 27 27 N 1.31768 * 119.74788 * 179.70086 * 25 24 23 28 28 H 1.09007 * 109.47125 * 299.99923 * 1 2 3 29 29 H 1.09002 * 109.47386 * 59.99863 * 1 2 3 30 30 H 1.08998 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46983 * 240.00122 * 2 1 3 32 32 H 1.09003 * 109.46636 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46807 * 299.99944 * 3 2 1 34 34 H 1.09000 * 109.46822 * 60.00293 * 3 2 1 35 35 H 1.08996 * 109.47384 * 29.99569 * 5 4 2 36 36 H 1.08998 * 109.47185 * 149.99903 * 5 4 2 37 37 H 0.96992 * 120.00207 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.47198 * 59.99464 * 16 14 4 39 39 H 1.09006 * 109.46887 * 300.00270 * 16 14 4 40 40 H 1.07997 * 120.59319 * 359.97126 * 18 17 16 41 41 H 1.08001 * 120.26072 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.51192 * 179.97438 * 21 20 19 43 43 H 1.07999 * 119.46947 * 179.97438 * 22 21 20 44 44 H 1.08002 * 120.23206 * 179.97438 * 23 22 21 45 45 H 0.96704 * 113.99931 * 270.25296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5817 1.4100 4.2144 9 7 1.5591 1.1249 4.9907 10 14 3.8690 2.6401 4.7797 11 1 4.9098 2.7848 3.7304 12 1 3.2238 3.9555 5.0223 13 1 4.4968 2.1575 6.0359 14 6 2.7933 -1.7864 1.0725 15 8 3.1971 -2.3583 2.0628 16 6 3.1578 -2.3009 -0.2962 17 6 4.0235 -3.5266 -0.1580 18 6 3.6431 -4.6768 -0.7777 19 6 4.4556 -5.8193 -0.6460 20 6 4.1318 -7.0401 -1.2543 21 6 4.9584 -8.1109 -1.0907 22 6 6.1197 -8.0105 -0.3277 23 6 6.4643 -6.8391 0.2772 24 6 5.6349 -5.7181 0.1350 25 6 5.9431 -4.4781 0.7327 26 8 7.0644 -4.3440 1.4813 27 7 5.1337 -3.4520 0.5644 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.6905 0.2974 2.4844 36 1 1.6238 -1.0226 3.2291 37 1 1.4734 1.5530 5.8568 38 1 3.7029 -1.5301 -0.8409 39 1 2.2495 -2.5576 -0.8416 40 1 2.7343 -4.7128 -1.3600 41 1 3.2342 -7.1312 -1.8479 42 1 4.7092 -9.0518 -1.5587 43 1 6.7571 -8.8749 -0.2139 44 1 7.3675 -6.7762 0.8660 45 1 6.9376 -4.5437 2.4189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433639024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:26 Heat of formation + Delta-G solvation = -20.769530 kcal Electronic energy + Delta-G solvation = -27761.129189 eV Core-core repulsion = 23936.968262 eV Total energy + Delta-G solvation = -3824.160927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08523 -39.16151 -37.89343 -37.02712 -35.75334 -32.84782 -32.39576 -31.79244 -30.85967 -30.67114 -28.20357 -26.77061 -26.42597 -24.15895 -23.36071 -22.33276 -22.12021 -21.14693 -18.79259 -18.15865 -17.78759 -17.08546 -16.61568 -16.37757 -16.07642 -15.26035 -15.19312 -14.77573 -14.50258 -14.26329 -13.92160 -13.66907 -13.56668 -13.39022 -13.13188 -12.82157 -12.67532 -12.29743 -12.08444 -11.97522 -11.67364 -11.60912 -11.51062 -11.41555 -11.30914 -11.12228 -10.84861 -10.79019 -10.53539 -10.33089 -10.11641 -9.95229 -9.45647 -9.28519 -9.15265 -8.79986 -8.36401 -7.98117 -7.56108 -5.97580 -3.99953 0.26172 0.80446 1.77546 2.90267 3.33751 3.41574 3.45311 3.49697 3.56599 3.90946 4.08178 4.38749 4.50909 4.52406 4.66323 4.73311 4.95692 5.00233 5.10757 5.19632 5.30111 5.34100 5.37668 5.45430 5.57592 5.60601 5.65360 5.70224 5.75326 5.89261 5.92913 6.03835 6.19192 6.22232 6.26895 6.29889 6.40832 6.44455 6.63480 6.66320 7.01116 7.17912 7.49436 7.53528 7.65820 8.00264 8.10566 8.32891 8.52498 9.00139 9.21024 9.64127 11.10602 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.003307 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.882735 B = 8465.473401 C = 9654.999455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.596 5.596 5 C 0.248 3.752 6 C -0.514 4.514 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.513 3.487 15 O -0.525 6.525 16 C -0.099 4.099 17 C 0.167 3.833 18 C -0.172 4.172 19 C -0.008 4.008 20 C -0.115 4.115 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.075 4.075 24 C -0.127 4.127 25 C 0.356 3.644 26 O -0.478 6.478 27 N -0.468 5.468 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -15.106 -15.675 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.329 5.329 5 C 0.129 3.871 6 C -0.553 4.553 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.298 3.702 15 O -0.401 6.401 16 C -0.139 4.139 17 C 0.041 3.959 18 C -0.192 4.192 19 C -0.013 4.013 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.150 4.150 23 C -0.094 4.094 24 C -0.131 4.131 25 C 0.163 3.837 26 O -0.286 6.286 27 N -0.186 5.186 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.730 -14.362 -15.102 21.172 hybrid contribution 0.332 -0.039 0.521 0.619 sum 4.063 -14.402 -14.581 20.893 Atomic orbital electron populations 1.22164 0.95666 1.01721 1.02445 1.20989 0.94024 0.94208 0.87951 1.22147 1.01450 0.95721 1.02241 1.48304 1.49512 1.26489 1.08559 1.19198 0.95767 0.94872 0.77250 1.21504 1.08802 1.23036 1.01968 0.92285 1.24925 0.95732 0.97199 0.96392 1.69942 1.29596 1.43516 1.10659 0.86506 0.81750 0.80781 0.78794 1.19775 1.21117 1.21025 1.19861 0.79323 0.81209 0.89785 1.90680 1.52193 1.57983 1.39218 1.20806 0.98946 0.95563 0.98613 1.19848 0.90637 0.94201 0.91202 1.21624 1.01394 0.92530 1.03623 1.18019 0.93288 0.94497 0.95498 1.20925 1.00245 0.91769 1.00367 1.20965 0.94350 0.98670 0.97723 1.20885 0.97556 0.97957 0.98586 1.20940 0.98562 0.91679 0.98266 1.19003 0.96809 0.94765 1.02481 1.19255 0.85380 0.86866 0.92224 1.84636 1.27915 1.91623 1.24390 1.66784 1.03454 1.32786 1.15582 0.91306 0.92312 0.92963 0.90865 0.92691 0.93330 0.90075 0.94878 0.94252 0.92962 0.87525 0.87932 0.84178 0.85030 0.85683 0.85703 0.84823 0.73572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.17 37.16 0.34 -1.98 16 2 C 0.13 2.14 3.17 -67.93 -0.22 1.93 16 3 C -0.16 -2.62 8.47 37.16 0.31 -2.30 16 4 N -0.60 -12.56 2.39 -167.47 -0.40 -12.96 16 5 C 0.25 6.45 4.60 -5.20 -0.02 6.43 16 6 C -0.51 -14.52 7.83 -34.44 -0.27 -14.79 16 7 H 0.06 1.69 7.63 -52.49 -0.40 1.29 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 10 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.51 10.89 7.60 -10.98 -0.08 10.81 16 15 O -0.52 -13.60 14.89 5.56 0.08 -13.52 16 16 C -0.10 -1.52 4.38 -29.04 -0.13 -1.65 16 17 C 0.17 2.72 5.72 -83.01 -0.48 2.25 16 18 C -0.17 -2.27 9.44 -39.39 -0.37 -2.64 16 19 C -0.01 -0.10 5.75 -106.83 -0.61 -0.72 16 20 C -0.12 -1.13 9.81 -39.56 -0.39 -1.52 16 21 C -0.10 -0.84 9.95 -39.89 -0.40 -1.23 16 22 C -0.13 -1.17 9.95 -39.89 -0.40 -1.57 16 23 C -0.07 -0.80 9.59 -39.57 -0.38 -1.18 16 24 C -0.13 -1.73 5.75 -106.74 -0.61 -2.35 16 25 C 0.36 5.71 7.82 -16.51 -0.13 5.58 16 26 O -0.48 -6.69 12.86 -18.15 -0.23 -6.93 16 27 N -0.47 -8.77 9.14 -9.46 -0.09 -8.85 16 28 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.95 5.77 -51.93 -0.30 0.65 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 35 H 0.03 0.87 6.43 -51.93 -0.33 0.53 16 36 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.11 1.51 7.79 -51.93 -0.40 1.10 16 39 H 0.10 1.19 7.45 -51.93 -0.39 0.80 16 40 H 0.14 1.37 7.89 -52.49 -0.41 0.95 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.20 7.68 -52.49 -0.40 0.79 16 45 H 0.41 4.00 9.06 45.56 0.41 4.42 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -36.91 373.62 -8.63 -45.54 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.41 Total: 3.30 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.93 Total: -3.35 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.25 Total: -47.92 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.15 Total: -20.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.91 -8.63 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433639024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.768 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds