Wall clock time and date at job start Tue Mar 31 2020 16:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 N 1.46500 * 109.47130 * 119.99670 * 2 1 3 5 5 C 1.46494 * 120.00342 * 300.00425 * 4 2 1 6 6 C 1.50702 * 109.46908 * 269.99689 * 5 4 2 7 7 H 1.07997 * 120.00094 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00090 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00036 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46983 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46994 * 119.99975 * 10 8 6 13 13 H 1.48500 * 109.46839 * 239.99608 * 10 8 6 14 14 C 1.34786 * 119.99598 * 120.00105 * 4 2 1 15 15 O 1.21280 * 119.99484 * 180.02562 * 14 4 2 16 16 C 1.50699 * 120.00060 * 0.02562 * 14 4 2 17 17 C 1.50695 * 109.47019 * 180.02562 * 16 14 4 18 18 C 1.36081 * 119.01793 * 125.00230 * 17 16 14 19 19 C 1.40808 * 118.81106 * 179.97438 * 18 17 16 20 20 C 1.40190 * 122.18918 * 180.02562 * 19 18 17 21 21 C 1.36262 * 119.48068 * 179.97438 * 20 19 18 22 22 C 1.39312 * 120.98264 * 0.02562 * 21 20 19 23 23 C 1.36263 * 121.05723 * 359.97438 * 22 21 20 24 24 C 1.40164 * 119.52784 * 0.27741 * 23 22 21 25 25 C 1.41066 * 122.05628 * 180.29010 * 24 23 22 26 26 O 1.35488 * 120.12731 * 359.44938 * 25 24 23 27 27 N 1.31768 * 119.74788 * 179.70086 * 25 24 23 28 28 H 1.09007 * 109.47125 * 299.99923 * 1 2 3 29 29 H 1.09002 * 109.47386 * 59.99863 * 1 2 3 30 30 H 1.08998 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46983 * 240.00122 * 2 1 3 32 32 H 1.09003 * 109.46636 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46807 * 299.99944 * 3 2 1 34 34 H 1.09000 * 109.46822 * 60.00293 * 3 2 1 35 35 H 1.08996 * 109.47384 * 29.99569 * 5 4 2 36 36 H 1.08998 * 109.47185 * 149.99903 * 5 4 2 37 37 H 0.96992 * 120.00207 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.47198 * 59.99464 * 16 14 4 39 39 H 1.09006 * 109.46887 * 300.00270 * 16 14 4 40 40 H 1.07997 * 120.59319 * 359.97126 * 18 17 16 41 41 H 1.08001 * 120.26072 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.51192 * 179.97438 * 21 20 19 43 43 H 1.07999 * 119.46947 * 179.97438 * 22 21 20 44 44 H 1.08002 * 120.23206 * 179.97438 * 23 22 21 45 45 H 0.96704 * 113.99931 * 270.25296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5817 1.4100 4.2144 9 7 1.5591 1.1249 4.9907 10 14 3.8690 2.6401 4.7797 11 1 4.9098 2.7848 3.7304 12 1 3.2238 3.9555 5.0223 13 1 4.4968 2.1575 6.0359 14 6 2.7933 -1.7864 1.0725 15 8 3.1971 -2.3583 2.0628 16 6 3.1578 -2.3009 -0.2962 17 6 4.0235 -3.5266 -0.1580 18 6 3.6431 -4.6768 -0.7777 19 6 4.4556 -5.8193 -0.6460 20 6 4.1318 -7.0401 -1.2543 21 6 4.9584 -8.1109 -1.0907 22 6 6.1197 -8.0105 -0.3277 23 6 6.4643 -6.8391 0.2772 24 6 5.6349 -5.7181 0.1350 25 6 5.9431 -4.4781 0.7327 26 8 7.0644 -4.3440 1.4813 27 7 5.1337 -3.4520 0.5644 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.6905 0.2974 2.4844 36 1 1.6238 -1.0226 3.2291 37 1 1.4734 1.5530 5.8568 38 1 3.7029 -1.5301 -0.8409 39 1 2.2495 -2.5576 -0.8416 40 1 2.7343 -4.7128 -1.3600 41 1 3.2342 -7.1312 -1.8479 42 1 4.7092 -9.0518 -1.5587 43 1 6.7571 -8.8749 -0.2139 44 1 7.3675 -6.7762 0.8660 45 1 6.9376 -4.5437 2.4189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433639024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:24 Heat of formation + Delta-G solvation = -48.033879 kcal Electronic energy + Delta-G solvation = -27762.311460 eV Core-core repulsion = 23936.968262 eV Total energy + Delta-G solvation = -3825.343198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06213 -40.70770 -38.81609 -38.13838 -37.31188 -34.95826 -33.37868 -32.84310 -32.36761 -31.73195 -29.75851 -28.14985 -27.82830 -25.11446 -25.03078 -23.63974 -23.06679 -22.53267 -19.95489 -19.47372 -18.78556 -18.59967 -18.17013 -17.95079 -17.07420 -16.84816 -16.30885 -16.23986 -15.97690 -15.35035 -15.05020 -14.85285 -14.79384 -14.46783 -14.40329 -14.32042 -13.94991 -13.73941 -13.36439 -13.24838 -13.13161 -12.86786 -12.80338 -12.74793 -12.64943 -12.51827 -12.49560 -12.18339 -12.08695 -12.05292 -11.62294 -11.49067 -11.02169 -10.61641 -10.53452 -10.30282 -10.03237 -9.35985 -8.89368 -8.19650 -6.30802 -0.63635 -0.09183 0.90620 1.32362 1.35273 1.46869 1.92648 1.96043 2.35309 2.50524 2.58110 3.06111 3.09681 3.41088 3.64024 3.79795 3.85919 3.95883 4.03966 4.16612 4.23877 4.32766 4.35610 4.45327 4.47495 4.50079 4.57962 4.77615 4.86885 4.90818 4.91904 5.01826 5.06184 5.08360 5.12481 5.15493 5.26644 5.46231 5.47444 5.48866 5.56038 5.60377 5.66529 5.93272 5.94202 6.13621 6.52321 6.76175 6.89404 7.06309 7.33230 7.59385 8.87490 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.003307 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.882735 B = 8465.473401 C = 9654.999455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 C -0.153 4.153 4 N -0.601 5.601 5 C 0.268 3.732 6 C -0.522 4.522 7 H 0.049 0.951 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.268 1.268 13 H -0.284 1.284 14 C 0.501 3.499 15 O -0.585 6.585 16 C -0.082 4.082 17 C 0.123 3.877 18 C -0.152 4.152 19 C -0.032 4.032 20 C -0.115 4.115 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.097 4.097 24 C -0.139 4.139 25 C 0.330 3.670 26 O -0.488 6.488 27 N -0.522 5.522 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.027 0.973 36 H -0.012 1.012 37 H 0.264 0.736 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.142 0.858 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -16.978 -19.214 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.332 5.332 5 C 0.147 3.853 6 C -0.561 4.561 7 H 0.067 0.933 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.196 1.196 12 H -0.193 1.193 13 H -0.210 1.210 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.122 4.122 17 C -0.002 4.002 18 C -0.172 4.172 19 C -0.037 4.037 20 C -0.133 4.133 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.142 4.142 25 C 0.137 3.863 26 O -0.298 6.298 27 N -0.241 5.241 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.006 0.994 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.167 0.833 40 H 0.196 0.804 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.175 0.825 44 H 0.159 0.841 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.401 -16.219 -18.687 24.977 hybrid contribution 0.446 0.362 1.578 1.679 sum 3.847 -15.858 -17.109 23.643 Atomic orbital electron populations 1.22121 0.94044 1.02440 1.02723 1.21445 0.95360 0.93827 0.87207 1.22093 1.00365 0.96237 1.02410 1.48357 1.49649 1.26997 1.08240 1.18569 0.95050 0.92316 0.79395 1.21695 1.08817 1.23387 1.02167 0.93317 1.25773 0.97783 0.99141 0.96539 1.70053 1.31250 1.44694 1.11096 0.85498 0.79163 0.78971 0.77986 1.19558 1.19288 1.21014 1.20985 0.77940 0.80390 0.91783 1.90641 1.54209 1.59733 1.41896 1.20794 1.00963 0.95824 0.94619 1.20053 0.90947 0.95693 0.93476 1.22005 1.01965 0.91262 1.01949 1.18403 0.93226 0.95904 0.96204 1.21305 1.01476 0.90592 0.99880 1.21468 0.93369 0.99792 0.96591 1.21357 0.97745 0.97910 0.96501 1.21131 0.99015 0.91798 0.99677 1.19195 0.97918 0.94535 1.02590 1.19562 0.85672 0.87754 0.93355 1.84582 1.27999 1.91879 1.25303 1.66636 1.05189 1.34826 1.17459 0.94593 0.88351 0.92060 0.86358 0.94307 0.89012 0.93942 0.95557 0.99412 0.92660 0.86275 0.83260 0.80383 0.81973 0.81913 0.82532 0.84051 0.72401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 9.17 71.98 0.66 -3.50 16 2 C 0.12 3.82 3.17 44.99 0.14 3.96 16 3 C -0.15 -4.96 8.47 71.98 0.61 -4.35 16 4 N -0.60 -26.06 2.39 -802.15 -1.91 -27.97 16 5 C 0.27 14.84 4.60 85.63 0.39 15.24 16 6 C -0.52 -31.02 7.83 25.60 0.20 -30.82 16 7 H 0.05 2.93 7.63 -2.91 -0.02 2.91 16 8 C 0.01 0.34 5.46 84.65 0.46 0.81 16 9 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 10 Si 0.96 47.13 29.54 68.60 2.03 49.15 16 11 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 14 C 0.50 21.95 7.60 87.66 0.67 22.61 16 15 O -0.58 -32.40 14.89 -3.03 -0.05 -32.44 16 16 C -0.08 -2.44 4.38 29.10 0.13 -2.32 16 17 C 0.12 4.02 5.72 41.93 0.24 4.26 16 18 C -0.15 -3.73 9.44 22.40 0.21 -3.52 16 19 C -0.03 -0.78 5.75 -21.29 -0.12 -0.90 16 20 C -0.11 -1.81 9.81 22.28 0.22 -1.59 16 21 C -0.09 -1.17 9.95 22.07 0.22 -0.95 16 22 C -0.12 -1.68 9.95 22.07 0.22 -1.46 16 23 C -0.10 -1.97 9.59 22.28 0.21 -1.76 16 24 C -0.14 -3.80 5.75 -21.24 -0.12 -3.92 16 25 C 0.33 11.20 7.82 85.40 0.67 11.86 16 26 O -0.49 -14.89 12.86 -87.88 -1.13 -16.02 16 27 N -0.52 -20.61 9.14 -297.07 -2.72 -23.33 16 28 H 0.03 1.19 6.66 -2.38 -0.02 1.18 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 2.61 5.77 -2.39 -0.01 2.60 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.69 6.92 -2.39 -0.02 1.68 16 35 H 0.03 1.48 6.43 -2.39 -0.02 1.46 16 36 H -0.01 -0.80 7.42 -2.39 -0.02 -0.81 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.12 3.18 7.79 -2.39 -0.02 3.16 16 39 H 0.15 2.89 7.45 -2.38 -0.02 2.87 16 40 H 0.18 2.73 7.89 -2.91 -0.02 2.70 16 41 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.14 2.51 7.68 -2.91 -0.02 2.48 16 45 H 0.42 9.45 9.06 -74.05 -0.67 8.78 16 Total: -1.00 -89.73 373.62 1.86 -87.87 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.35 Total: 16.76 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.01 Total: 3.65 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.35 Total: -108.97 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.18 Total: -48.46 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -89.73 1.86 -87.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433639024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.838 kcal (2) G-P(sol) polarization free energy of solvation -89.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds