Wall clock time and date at job start Tue Mar 31 2020 15:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 C 1.50693 * 109.47490 * 120.00026 * 2 1 3 5 5 O 1.21280 * 120.00464 * 240.00481 * 4 2 1 6 6 N 1.34780 * 119.99846 * 60.00268 * 4 2 1 7 7 C 1.46494 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09004 * 110.01713 * 33.61213 * 7 6 4 9 9 C 1.54265 * 110.03399 * 272.16271 * 7 6 4 10 10 C 1.54880 * 104.19918 * 264.32688 * 9 7 6 11 11 C 1.54888 * 102.75044 * 322.05742 * 10 9 7 12 12 H 1.08999 * 110.60198 * 279.21006 * 11 10 9 13 13 C 1.53000 * 110.49144 * 156.61781 * 11 10 9 14 14 N 1.46499 * 109.46840 * 70.22314 * 13 11 10 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99944 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47178 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00092 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00019 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00035 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99977 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99975 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47103 * 90.00422 * 23 21 19 25 25 H 1.48502 * 109.47105 * 210.00353 * 23 21 19 26 26 H 1.48500 * 109.47312 * 330.00238 * 23 21 19 27 27 C 1.53878 * 110.03350 * 154.99942 * 7 6 4 28 28 H 1.09003 * 109.47332 * 60.00026 * 1 2 3 29 29 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46804 * 299.99980 * 1 2 3 31 31 H 1.08996 * 109.47256 * 240.00645 * 2 1 3 32 32 H 1.09005 * 109.47329 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47789 * 300.00254 * 3 2 1 34 34 H 1.08996 * 109.47412 * 60.00392 * 3 2 1 35 35 H 0.97001 * 119.99942 * 359.97438 * 6 4 2 36 36 H 1.09000 * 110.48350 * 23.00521 * 9 7 6 37 37 H 1.08998 * 110.48498 * 145.64981 * 9 7 6 38 38 H 1.09002 * 110.76069 * 203.74339 * 10 9 7 39 39 H 1.09006 * 110.75869 * 80.37125 * 10 9 7 40 40 H 1.09002 * 109.47398 * 190.22640 * 13 11 10 41 41 H 1.09001 * 109.47194 * 310.22821 * 13 11 10 42 42 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 43 43 H 1.09002 * 109.47152 * 300.00160 * 17 15 14 44 44 H 1.09001 * 109.46980 * 60.00059 * 17 15 14 45 45 H 0.97005 * 120.00180 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.03122 * 359.97438 * 27 7 6 47 47 H 1.09005 * 110.03391 * 238.57251 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -0.1210 2.0288 6 7 1.7069 -2.0008 1.4436 7 6 2.1948 -2.6912 2.6400 8 1 2.2579 -1.9925 3.4743 9 6 3.5795 -3.3127 2.3637 10 6 3.2671 -4.7790 1.9750 11 6 2.0998 -5.1434 2.9257 12 1 2.4777 -5.4069 3.9136 13 6 1.2752 -6.2938 2.3449 14 7 2.0581 -7.5309 2.3973 15 6 1.5307 -8.6823 1.9362 16 8 0.4077 -8.6943 1.4783 17 6 2.3359 -9.9550 1.9906 18 16 1.3610 -11.3157 1.3019 19 6 2.5103 -12.6387 1.4847 20 1 3.4818 -12.4539 1.9187 21 6 2.1675 -13.9180 1.0698 22 7 3.0259 -14.9064 1.2068 23 14 0.4874 -14.2374 0.3184 24 1 0.5590 -14.0481 -1.1528 25 1 0.0675 -15.6299 0.6184 26 1 -0.5001 -13.2882 0.8921 27 6 1.2540 -3.8553 2.9974 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.1489 -2.4721 0.8053 36 1 4.0718 -2.7962 1.5397 37 1 4.1983 -3.2793 3.2604 38 1 4.1295 -5.4196 2.1591 39 1 2.9516 -4.8438 0.9336 40 1 0.3621 -6.4167 2.9274 41 1 1.0182 -6.0701 1.3095 42 1 2.9562 -7.5214 2.7638 43 1 3.2494 -9.8321 1.4087 44 1 2.5921 -10.1788 3.0261 45 1 2.7862 -15.8007 0.9172 46 1 0.4341 -3.9062 2.2808 47 1 0.8613 -3.7220 4.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573160512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:12 Heat of formation + Delta-G solvation = -105.900720 kcal Electronic energy + Delta-G solvation = -24972.558928 eV Core-core repulsion = 21280.150387 eV Total energy + Delta-G solvation = -3692.408541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62849 -39.47882 -38.36596 -35.05711 -34.91448 -33.35953 -32.45163 -30.51584 -29.16773 -28.33878 -27.50338 -25.64906 -24.64065 -23.79818 -20.93624 -20.91358 -20.25300 -19.91650 -17.88300 -17.57515 -16.96614 -16.46680 -16.09199 -15.93753 -15.45393 -15.19428 -14.97884 -14.73690 -14.21518 -13.99940 -13.83165 -13.81757 -13.30492 -13.27200 -12.94489 -12.80480 -12.78431 -12.47704 -12.12852 -12.07129 -11.91774 -11.64761 -11.55600 -11.54155 -11.32633 -11.26070 -11.10838 -11.02463 -10.98158 -10.61036 -10.06633 -9.87109 -9.54826 -9.43558 -9.03675 -8.97688 -8.51789 -6.93406 -6.30200 -4.02119 2.27321 2.72920 2.79978 2.95732 3.29520 3.33030 3.49138 3.63963 4.03892 4.17100 4.21675 4.31845 4.37479 4.42475 4.48026 4.72231 4.84672 4.90992 4.99016 4.99427 5.08819 5.09244 5.12542 5.14307 5.16779 5.22356 5.30362 5.36814 5.39419 5.46250 5.58374 5.64507 5.65849 5.67456 5.72397 5.76037 5.80889 5.82471 5.98471 6.00256 6.19336 6.50860 7.10318 7.58718 7.85867 7.92786 8.40267 8.47020 9.15935 10.78992 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.001813 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.480427 B =15436.982958 C =15849.031674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.133 4.133 4 C 0.516 3.484 5 O -0.540 6.540 6 N -0.723 5.723 7 C 0.140 3.860 8 H 0.091 0.909 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.104 4.104 12 H 0.086 0.914 13 C 0.130 3.870 14 N -0.736 5.736 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 30.757 0.652 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.190 4.190 4 C 0.303 3.697 5 O -0.417 6.417 6 N -0.376 5.376 7 C 0.035 3.965 8 H 0.109 0.891 9 C -0.171 4.171 10 C -0.158 4.158 11 C -0.123 4.123 12 H 0.104 0.896 13 C 0.006 3.994 14 N -0.390 5.390 15 C 0.316 3.684 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.161 4.161 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.328 30.974 0.455 31.156 hybrid contribution 0.964 -0.726 0.048 1.208 sum -2.365 30.248 0.503 30.344 Atomic orbital electron populations 1.21797 0.92799 1.02576 1.03064 1.21333 0.97676 0.98176 0.96659 1.21610 1.01799 0.93500 1.02133 1.20744 0.79772 0.81616 0.87611 1.90701 1.37741 1.66257 1.46980 1.46249 1.53782 1.12080 1.25452 1.21595 0.93310 0.93655 0.87905 0.89100 1.22766 0.96500 0.95705 1.02129 1.22625 0.97892 0.95896 0.99396 1.22259 0.95947 0.94008 1.00123 0.89553 1.21326 0.94279 0.82719 1.01126 1.45950 1.19351 1.08013 1.65711 1.20279 0.87026 0.84323 0.76772 1.90696 1.19105 1.85718 1.44049 1.23282 1.02775 0.95754 1.05701 1.84780 1.24218 1.01067 1.81542 1.22318 1.02837 0.93648 1.48135 0.89389 1.24714 0.97492 0.94846 0.94265 1.69942 1.35181 1.00917 1.45621 0.86731 0.84937 0.79251 0.80895 1.19218 1.19937 1.15940 1.22423 0.97953 0.92749 1.02959 0.91279 0.92078 0.92021 0.88480 0.91969 0.92015 0.91946 0.76487 0.91206 0.90641 0.91030 0.91054 0.91584 0.91591 0.76675 0.88532 0.88474 0.91940 0.90457 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 9.09 37.16 0.34 -0.26 16 2 C -0.12 -0.65 3.26 -91.77 -0.30 -0.95 16 3 C -0.13 -0.81 8.48 37.16 0.32 -0.50 16 4 C 0.52 4.24 7.15 -10.99 -0.08 4.16 16 5 O -0.54 -6.59 15.64 5.56 0.09 -6.50 16 6 N -0.72 -4.54 4.92 -52.72 -0.26 -4.80 16 7 C 0.14 0.95 3.25 -66.81 -0.22 0.73 16 8 H 0.09 0.76 7.57 -51.93 -0.39 0.36 16 9 C -0.13 -0.92 6.54 -25.08 -0.16 -1.08 16 10 C -0.12 -0.80 6.19 -24.74 -0.15 -0.95 16 11 C -0.10 -0.68 2.89 -88.96 -0.26 -0.94 16 12 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 13 C 0.13 1.25 4.96 -4.04 -0.02 1.23 16 14 N -0.74 -8.61 5.45 -60.29 -0.33 -8.93 16 15 C 0.53 9.06 7.85 -10.98 -0.09 8.97 16 16 O -0.52 -10.95 15.86 5.56 0.09 -10.86 16 17 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 20 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 23 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 C -0.12 -0.70 6.14 -25.61 -0.16 -0.85 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.20 7.56 -51.93 -0.39 -0.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.40 1.72 7.74 -40.82 -0.32 1.41 16 36 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.51 7.97 -51.93 -0.41 0.10 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.68 8.02 -51.93 -0.42 0.27 16 42 H 0.40 3.61 8.44 -40.82 -0.34 3.26 16 43 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.08 0.41 7.31 -51.93 -0.38 0.03 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -35.72 395.30 -8.87 -44.59 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.14 Total: -0.65 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -0.34 Total: -4.51 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.19 Total: -39.39 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.18 Total: -17.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.72 -8.87 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573160512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.310 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds