Wall clock time and date at job start Tue Mar 31 2020 15:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 C 1.50693 * 109.47490 * 120.00026 * 2 1 3 5 5 O 1.21280 * 120.00464 * 240.00481 * 4 2 1 6 6 N 1.34780 * 119.99846 * 60.00268 * 4 2 1 7 7 C 1.46494 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09004 * 110.01713 * 33.61213 * 7 6 4 9 9 C 1.54265 * 110.03399 * 272.16271 * 7 6 4 10 10 C 1.54880 * 104.19918 * 264.32688 * 9 7 6 11 11 C 1.54888 * 102.75044 * 322.05742 * 10 9 7 12 12 H 1.08999 * 110.60198 * 279.21006 * 11 10 9 13 13 C 1.53000 * 110.49144 * 156.61781 * 11 10 9 14 14 N 1.46499 * 109.46840 * 70.22314 * 13 11 10 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99944 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47178 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00092 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00019 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00035 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99977 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99975 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47103 * 90.00422 * 23 21 19 25 25 H 1.48502 * 109.47105 * 210.00353 * 23 21 19 26 26 H 1.48500 * 109.47312 * 330.00238 * 23 21 19 27 27 C 1.53878 * 110.03350 * 154.99942 * 7 6 4 28 28 H 1.09003 * 109.47332 * 60.00026 * 1 2 3 29 29 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46804 * 299.99980 * 1 2 3 31 31 H 1.08996 * 109.47256 * 240.00645 * 2 1 3 32 32 H 1.09005 * 109.47329 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47789 * 300.00254 * 3 2 1 34 34 H 1.08996 * 109.47412 * 60.00392 * 3 2 1 35 35 H 0.97001 * 119.99942 * 359.97438 * 6 4 2 36 36 H 1.09000 * 110.48350 * 23.00521 * 9 7 6 37 37 H 1.08998 * 110.48498 * 145.64981 * 9 7 6 38 38 H 1.09002 * 110.76069 * 203.74339 * 10 9 7 39 39 H 1.09006 * 110.75869 * 80.37125 * 10 9 7 40 40 H 1.09002 * 109.47398 * 190.22640 * 13 11 10 41 41 H 1.09001 * 109.47194 * 310.22821 * 13 11 10 42 42 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 43 43 H 1.09002 * 109.47152 * 300.00160 * 17 15 14 44 44 H 1.09001 * 109.46980 * 60.00059 * 17 15 14 45 45 H 0.97005 * 120.00180 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.03122 * 359.97438 * 27 7 6 47 47 H 1.09005 * 110.03391 * 238.57251 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -0.1210 2.0288 6 7 1.7069 -2.0008 1.4436 7 6 2.1948 -2.6912 2.6400 8 1 2.2579 -1.9925 3.4743 9 6 3.5795 -3.3127 2.3637 10 6 3.2671 -4.7790 1.9750 11 6 2.0998 -5.1434 2.9257 12 1 2.4777 -5.4069 3.9136 13 6 1.2752 -6.2938 2.3449 14 7 2.0581 -7.5309 2.3973 15 6 1.5307 -8.6823 1.9362 16 8 0.4077 -8.6943 1.4783 17 6 2.3359 -9.9550 1.9906 18 16 1.3610 -11.3157 1.3019 19 6 2.5103 -12.6387 1.4847 20 1 3.4818 -12.4539 1.9187 21 6 2.1675 -13.9180 1.0698 22 7 3.0259 -14.9064 1.2068 23 14 0.4874 -14.2374 0.3184 24 1 0.5590 -14.0481 -1.1528 25 1 0.0675 -15.6299 0.6184 26 1 -0.5001 -13.2882 0.8921 27 6 1.2540 -3.8553 2.9974 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.1489 -2.4721 0.8053 36 1 4.0718 -2.7962 1.5397 37 1 4.1983 -3.2793 3.2604 38 1 4.1295 -5.4196 2.1591 39 1 2.9516 -4.8438 0.9336 40 1 0.3621 -6.4167 2.9274 41 1 1.0182 -6.0701 1.3095 42 1 2.9562 -7.5214 2.7638 43 1 3.2494 -9.8321 1.4087 44 1 2.5921 -10.1788 3.0261 45 1 2.7862 -15.8007 0.9172 46 1 0.4341 -3.9062 2.2808 47 1 0.8613 -3.7220 4.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573160512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:10 Heat of formation + Delta-G solvation = -130.951348 kcal Electronic energy + Delta-G solvation = -24973.645205 eV Core-core repulsion = 21280.150387 eV Total energy + Delta-G solvation = -3693.494818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27046 -40.63201 -39.14468 -35.99998 -35.45067 -34.66667 -34.15846 -31.63473 -29.98889 -29.11110 -27.93193 -27.83532 -25.42242 -24.36210 -21.93221 -21.51271 -21.06663 -20.57323 -19.80620 -18.12575 -17.81163 -17.74574 -17.12174 -16.88324 -16.81439 -16.41998 -16.03594 -15.60109 -15.38527 -15.03065 -14.88764 -14.65008 -14.57944 -14.34467 -13.84626 -13.74334 -13.35504 -13.29531 -13.16672 -13.00049 -12.95868 -12.75458 -12.66797 -12.54062 -12.10975 -12.07563 -11.97740 -11.90610 -11.82770 -11.74477 -11.56181 -11.16448 -10.96913 -10.71336 -10.52641 -10.09381 -10.02985 -8.98477 -8.50876 -6.21602 1.00741 1.32108 1.47773 1.57532 1.59833 1.65216 2.20754 2.25514 2.32982 2.73285 2.87426 3.46815 3.57762 3.70970 3.83637 3.93358 4.00132 4.06251 4.24145 4.27497 4.35608 4.45041 4.48961 4.49190 4.52345 4.55413 4.63629 4.75509 4.86143 4.87193 4.89213 4.92578 4.98393 5.06902 5.10425 5.17038 5.26049 5.31091 5.31846 5.37594 5.50897 5.63834 5.71201 6.12026 6.50161 6.57292 6.94349 7.22727 7.28282 8.61431 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.001813 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.480427 B =15436.982958 C =15849.031674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.133 4.133 4 C 0.511 3.489 5 O -0.587 6.587 6 N -0.713 5.713 7 C 0.140 3.860 8 H 0.074 0.926 9 C -0.129 4.129 10 C -0.116 4.116 11 C -0.092 4.092 12 H 0.097 0.903 13 C 0.129 3.871 14 N -0.710 5.710 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.113 4.113 18 S -0.176 6.176 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.236 1.236 27 C -0.115 4.115 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.412 0.588 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.277 0.723 46 H 0.085 0.915 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 31.799 0.233 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.190 4.190 4 C 0.299 3.701 5 O -0.467 6.467 6 N -0.365 5.365 7 C 0.035 3.965 8 H 0.092 0.908 9 C -0.167 4.167 10 C -0.154 4.154 11 C -0.111 4.111 12 H 0.116 0.884 13 C 0.006 3.994 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.264 4.264 18 S 0.051 5.949 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.160 1.160 27 C -0.153 4.153 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.249 0.751 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.253 0.747 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.275 32.028 0.045 32.312 hybrid contribution 1.379 -0.911 0.242 1.670 sum -2.896 31.117 0.287 31.253 Atomic orbital electron populations 1.21794 0.91402 1.03431 1.03257 1.21377 0.98704 0.97505 0.95888 1.21610 1.00847 0.94187 1.02381 1.21274 0.79023 0.81951 0.87880 1.90679 1.39969 1.67329 1.48725 1.46193 1.53249 1.11624 1.25424 1.21550 0.93693 0.93635 0.87603 0.90769 1.22706 0.96460 0.95855 1.01706 1.22593 0.98043 0.95553 0.99195 1.22163 0.95511 0.93042 1.00353 0.88431 1.21480 0.94388 0.82278 1.01242 1.45741 1.20018 1.07121 1.63516 1.19909 0.86186 0.84936 0.76972 1.90687 1.20764 1.86327 1.46492 1.23288 1.02475 0.94300 1.06311 1.84690 1.25140 1.02540 1.82573 1.22474 1.02579 0.95206 1.47474 0.91998 1.25575 1.00954 0.94761 0.94750 1.70020 1.37094 1.01580 1.46814 0.85858 0.80658 0.79634 0.80162 1.18671 1.18423 1.16010 1.22369 0.97678 0.91500 1.03784 0.89860 0.90903 0.93064 0.86620 0.93473 0.89943 0.93460 0.75072 0.92508 0.90519 0.90502 0.91337 0.92022 0.91840 0.74748 0.86920 0.86908 0.91397 0.89603 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.09 71.98 0.65 -0.24 16 2 C -0.11 -1.11 3.26 -11.54 -0.04 -1.15 16 3 C -0.13 -1.56 8.48 71.98 0.61 -0.95 16 4 C 0.51 8.12 7.15 87.65 0.63 8.75 16 5 O -0.59 -14.67 15.64 -3.03 -0.05 -14.72 16 6 N -0.71 -7.99 4.92 -439.11 -2.16 -10.15 16 7 C 0.14 1.71 3.25 45.72 0.15 1.86 16 8 H 0.07 1.20 7.57 -2.38 -0.02 1.18 16 9 C -0.13 -1.61 6.54 31.67 0.21 -1.40 16 10 C -0.12 -1.25 6.19 31.88 0.20 -1.05 16 11 C -0.09 -0.94 2.89 -9.72 -0.03 -0.96 16 12 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 13 C 0.13 2.14 4.96 86.38 0.43 2.57 16 14 N -0.71 -14.59 5.45 -463.05 -2.52 -17.12 16 15 C 0.53 17.19 7.85 87.66 0.69 17.88 16 16 O -0.56 -22.96 15.86 -3.02 -0.05 -23.00 16 17 C -0.11 -4.07 6.16 71.24 0.44 -3.64 16 18 S -0.18 -8.73 18.55 -56.49 -1.05 -9.78 16 19 C -0.53 -30.53 10.04 67.95 0.68 -29.85 16 20 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 21 C 0.04 2.62 5.50 84.86 0.47 3.09 16 22 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 23 Si 0.91 44.55 27.74 68.60 1.90 46.45 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 27 C -0.11 -1.02 6.14 31.32 0.19 -0.83 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.29 7.56 -2.39 -0.02 0.27 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.68 8.10 -2.38 -0.02 0.67 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 35 H 0.41 2.64 7.74 -92.71 -0.72 1.92 16 36 H 0.06 0.88 8.04 -2.39 -0.02 0.86 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.81 7.97 -2.38 -0.02 0.79 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.15 8.02 -2.39 -0.02 1.13 16 42 H 0.42 6.06 8.44 -92.71 -0.78 5.27 16 43 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 44 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 45 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 46 H 0.09 0.66 7.31 -2.38 -0.02 0.64 16 47 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -78.59 395.30 1.08 -77.51 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.57 Total: 11.93 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.27 Total: -5.94 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -4.38 Total: -82.46 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.10 Total: -37.72 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -78.59 1.08 -77.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573160512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.439 kcal (2) G-P(sol) polarization free energy of solvation -78.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds