Wall clock time and date at job start Tue Mar 31 2020 16:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47128 * 2 1 4 4 N 1.46507 * 109.47216 * 239.99761 * 2 1 3 5 5 C 1.34944 * 126.03174 * 84.71868 * 4 2 1 6 6 C 1.35321 * 107.74250 * 179.84368 * 5 4 2 7 7 C 1.39869 * 107.91942 * 0.41499 * 6 5 4 8 8 C 1.50702 * 125.89918 * 179.75813 * 7 6 5 9 9 O 1.45202 * 109.47043 * 0.02562 * 8 7 6 10 10 C 1.34224 * 116.99828 * 180.02562 * 9 8 7 11 11 O 1.20821 * 120.00167 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.00007 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47271 * 300.00058 * 12 10 9 14 14 C 1.50693 * 109.46846 * 59.99666 * 12 10 9 15 15 H 1.08000 * 120.00264 * 34.16619 * 14 12 10 16 16 C 1.37873 * 120.00096 * 214.16279 * 14 12 10 17 17 N 1.31516 * 119.99984 * 6.40763 * 16 14 12 18 18 Si 1.86804 * 120.00226 * 186.40473 * 16 14 12 19 19 H 1.48498 * 109.47185 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47008 * 120.00230 * 18 16 14 21 21 H 1.48496 * 109.47129 * 240.00157 * 18 16 14 22 22 C 1.50697 * 109.47294 * 179.97438 * 12 10 9 23 23 C 1.38233 * 119.99945 * 293.85836 * 22 12 10 24 24 C 1.38241 * 120.00055 * 179.80858 * 23 22 12 25 25 C 1.38238 * 119.99803 * 0.39743 * 24 23 22 26 26 C 1.38232 * 119.99706 * 359.85800 * 25 24 23 27 27 C 1.38230 * 120.00584 * 359.95322 * 26 25 24 28 28 N 1.30838 * 108.20228 * 359.74927 * 7 6 5 29 29 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46739 * 60.00167 * 1 2 3 31 31 H 1.08997 * 109.47539 * 299.99944 * 1 2 3 32 32 H 1.08999 * 109.47150 * 120.00147 * 2 1 3 33 33 H 1.09002 * 109.47174 * 299.99567 * 3 2 1 34 34 H 1.09003 * 109.47345 * 60.00158 * 3 2 1 35 35 H 1.09000 * 109.46898 * 179.97438 * 3 2 1 36 36 H 1.08004 * 126.13336 * 359.97438 * 5 4 2 37 37 H 1.08000 * 126.03948 * 180.16259 * 6 5 4 38 38 H 1.09003 * 109.46878 * 120.00263 * 8 7 6 39 39 H 1.08998 * 109.47380 * 240.00440 * 8 7 6 40 40 H 0.97007 * 119.99968 * 180.02562 * 17 16 14 41 41 H 1.08006 * 120.00087 * 0.02562 * 23 22 12 42 42 H 1.07999 * 120.00046 * 180.23802 * 24 23 22 43 43 H 1.07991 * 119.99711 * 179.83360 * 25 24 23 44 44 H 1.08006 * 120.00177 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00297 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1883 -0.1406 -2.4167 6 6 2.6567 -1.1051 -3.2421 7 6 2.7682 -2.2874 -2.5030 8 6 3.2464 -3.6163 -3.0286 9 8 3.5804 -3.4884 -4.4358 10 6 4.0254 -4.5908 -5.0591 11 8 4.1327 -5.6281 -4.4489 12 6 4.3912 -4.5346 -6.5200 13 1 3.5188 -4.2372 -7.1019 14 6 5.4963 -3.5304 -6.7228 15 1 6.2509 -3.3967 -5.9618 16 6 5.5443 -2.7824 -7.8800 17 7 4.5601 -2.8524 -8.7495 18 14 7.0073 -1.6695 -8.2129 19 1 7.9720 -1.7706 -7.0885 20 1 7.6712 -2.0884 -9.4735 21 1 6.5418 -0.2653 -8.3416 22 6 4.8585 -5.8937 -6.9735 23 6 6.0295 -6.4262 -6.4675 24 6 6.4561 -7.6746 -6.8805 25 6 5.7160 -8.3869 -7.8056 26 6 4.5478 -7.8520 -8.3155 27 6 4.1191 -6.6053 -7.8997 28 7 2.3856 -2.0401 -1.2765 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.9884 0.8861 -2.6859 37 1 2.8977 -0.9845 -4.2880 38 1 4.1300 -3.9301 -2.4728 39 1 2.4584 -4.3597 -2.9080 40 1 4.5940 -2.3263 -9.5639 41 1 6.6093 -5.8685 -5.7469 42 1 7.3690 -8.0924 -6.4823 43 1 6.0507 -9.3609 -8.1302 44 1 3.9697 -8.4082 -9.0387 45 1 3.2066 -6.1873 -8.2984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583279277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:21 Heat of formation + Delta-G solvation = 11.311613 kcal Electronic energy + Delta-G solvation = -27081.719080 eV Core-core repulsion = 23258.949295 eV Total energy + Delta-G solvation = -3822.769785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16366 -39.64757 -38.13464 -36.19083 -35.40330 -33.71330 -31.23648 -30.97904 -30.00726 -29.77984 -27.84752 -27.65778 -26.53519 -23.97508 -22.69505 -21.71243 -21.46482 -20.11360 -19.69238 -19.31800 -17.17072 -16.98761 -16.43587 -16.03856 -15.72898 -15.39478 -15.11028 -14.63547 -14.48648 -14.13718 -14.03643 -13.64795 -13.50246 -13.22444 -12.79029 -12.69233 -12.54382 -12.49785 -12.38339 -12.33560 -11.75229 -11.73320 -11.66973 -11.50296 -11.37485 -11.04414 -10.98036 -10.47804 -10.40698 -10.33317 -10.16532 -10.10003 -9.49834 -9.15585 -9.05589 -8.67851 -8.38222 -8.01749 -7.72910 -6.26172 -4.30192 1.96319 2.25770 2.31666 2.40919 2.97111 3.22161 3.25587 3.32420 3.39479 3.56324 4.25706 4.31022 4.55143 4.71363 4.74127 4.83847 4.91523 5.10234 5.11034 5.21655 5.30887 5.44368 5.54913 5.61290 5.67389 5.68787 5.73066 5.77796 5.79513 5.86315 6.03246 6.12947 6.17619 6.37330 6.42645 6.50675 6.79974 6.80052 6.89318 7.10775 7.14233 7.29807 7.31405 7.36617 7.61975 7.72245 7.82852 7.86925 8.00312 8.66463 8.87863 9.33894 10.83416 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003100 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.583521 B = 9029.401443 C =10447.252383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.157 3.843 3 C -0.164 4.164 4 N -0.371 5.371 5 C 0.044 3.956 6 C -0.237 4.237 7 C 0.077 3.923 8 C 0.146 3.854 9 O -0.335 6.335 10 C 0.477 3.523 11 O -0.537 6.537 12 C 0.077 3.923 13 H 0.105 0.895 14 C -0.510 4.510 15 H 0.065 0.935 16 C 0.077 3.923 17 N -0.878 5.878 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.021 4.021 23 C -0.085 4.085 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.116 4.116 28 N -0.294 5.294 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.267 0.733 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 5.376 11.366 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.222 4.222 4 N -0.155 5.155 5 C -0.100 4.100 6 C -0.266 4.266 7 C -0.089 4.089 8 C 0.070 3.930 9 O -0.250 6.250 10 C 0.323 3.677 11 O -0.427 6.427 12 C 0.057 3.943 13 H 0.123 0.877 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.128 4.128 17 N -0.514 5.514 18 Si 0.728 3.272 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.022 4.022 23 C -0.103 4.103 24 C -0.151 4.151 25 C -0.163 4.163 26 C -0.149 4.149 27 C -0.134 4.134 28 N -0.118 5.118 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.188 0.812 37 H 0.177 0.823 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.160 4.767 12.668 14.871 hybrid contribution 0.869 0.975 -1.001 1.645 sum -5.291 5.741 11.667 14.039 Atomic orbital electron populations 1.22246 0.93823 1.03328 1.02906 1.21193 0.94650 0.92638 0.86038 1.22192 1.02452 0.94067 1.03521 1.48733 1.51383 1.06962 1.08382 1.22447 1.02087 0.99979 0.85518 1.21524 1.11113 0.91593 1.02394 1.21845 0.99233 0.96290 0.91528 1.20580 1.00403 0.90869 0.81164 1.86596 1.76238 1.39606 1.22608 1.25085 0.71028 0.79619 0.91957 1.90560 1.51705 1.31970 1.68453 1.17884 1.00898 0.91793 0.83681 0.87750 1.20614 1.09816 1.19881 1.04372 0.91694 1.24912 0.96112 0.95916 0.95822 1.69880 1.30481 1.40579 1.10478 0.86383 0.82328 0.80005 0.78513 1.19405 1.20694 1.20651 1.20016 0.93716 0.93956 0.94498 1.20872 0.96065 0.94461 0.98923 1.20970 0.99676 0.95623 0.98881 1.20839 0.96432 0.99564 0.99460 1.20918 0.97119 0.96219 1.00658 1.21008 0.99903 0.94156 0.98330 1.77191 1.22176 0.93501 1.18957 0.91604 0.91850 0.90665 0.88195 0.91435 0.90135 0.91406 0.81179 0.82294 0.89955 0.90046 0.92285 0.86906 0.87382 0.87535 0.87327 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.52 37.16 0.35 -0.88 16 2 C 0.16 1.39 3.93 -67.93 -0.27 1.12 16 3 C -0.16 -1.05 8.84 37.16 0.33 -0.72 16 4 N -0.37 -4.85 3.52 -54.86 -0.19 -5.04 16 5 C 0.04 0.58 10.59 -17.22 -0.18 0.39 16 6 C -0.24 -3.85 10.14 -40.01 -0.41 -4.25 16 7 C 0.08 1.33 7.19 -82.40 -0.59 0.74 16 8 C 0.15 2.67 6.09 36.01 0.22 2.89 16 9 O -0.33 -7.17 9.47 -39.24 -0.37 -7.54 16 10 C 0.48 11.04 7.14 36.01 0.26 11.30 16 11 O -0.54 -12.81 15.17 -18.75 -0.28 -13.09 16 12 C 0.08 1.86 2.55 -94.08 -0.24 1.62 16 13 H 0.10 2.69 7.00 -51.93 -0.36 2.33 16 14 C -0.51 -13.15 7.59 -34.44 -0.26 -13.41 16 15 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 16 C 0.08 2.00 5.45 -17.82 -0.10 1.91 16 17 N -0.88 -23.46 12.78 55.43 0.71 -22.75 16 18 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.02 -0.49 4.30 -104.63 -0.45 -0.94 16 23 C -0.09 -1.88 8.31 -39.58 -0.33 -2.20 16 24 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.14 -2.61 10.05 -39.58 -0.40 -3.00 16 26 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 27 C -0.12 -2.47 9.67 -39.58 -0.38 -2.86 16 28 N -0.29 -4.81 12.58 33.67 0.42 -4.39 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.40 7.16 -51.93 -0.37 0.02 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.17 1.57 7.27 -52.48 -0.38 1.19 16 37 H 0.16 2.70 7.90 -52.49 -0.41 2.28 16 38 H 0.08 1.48 8.13 -51.93 -0.42 1.05 16 39 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.11 2.50 7.89 -52.48 -0.41 2.09 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.12 2.36 7.96 -52.48 -0.42 1.94 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -30.51 386.44 -8.72 -39.23 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.56 Total: 6.56 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.24 Total: -14.10 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.94 Total: -32.18 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.66 Total: -20.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.51 -8.72 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583279277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.538 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds