Wall clock time and date at job start Tue Mar 31 2020 16:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47128 * 2 1 4 4 N 1.46507 * 109.47216 * 239.99761 * 2 1 3 5 5 C 1.34944 * 126.03174 * 84.71868 * 4 2 1 6 6 C 1.35321 * 107.74250 * 179.84368 * 5 4 2 7 7 C 1.39869 * 107.91942 * 0.41499 * 6 5 4 8 8 C 1.50702 * 125.89918 * 179.75813 * 7 6 5 9 9 O 1.45202 * 109.47043 * 0.02562 * 8 7 6 10 10 C 1.34224 * 116.99828 * 180.02562 * 9 8 7 11 11 O 1.20821 * 120.00167 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.00007 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47271 * 300.00058 * 12 10 9 14 14 C 1.50693 * 109.46846 * 59.99666 * 12 10 9 15 15 H 1.08000 * 120.00264 * 34.16619 * 14 12 10 16 16 C 1.37873 * 120.00096 * 214.16279 * 14 12 10 17 17 N 1.31516 * 119.99984 * 6.40763 * 16 14 12 18 18 Si 1.86804 * 120.00226 * 186.40473 * 16 14 12 19 19 H 1.48498 * 109.47185 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47008 * 120.00230 * 18 16 14 21 21 H 1.48496 * 109.47129 * 240.00157 * 18 16 14 22 22 C 1.50697 * 109.47294 * 179.97438 * 12 10 9 23 23 C 1.38233 * 119.99945 * 293.85836 * 22 12 10 24 24 C 1.38241 * 120.00055 * 179.80858 * 23 22 12 25 25 C 1.38238 * 119.99803 * 0.39743 * 24 23 22 26 26 C 1.38232 * 119.99706 * 359.85800 * 25 24 23 27 27 C 1.38230 * 120.00584 * 359.95322 * 26 25 24 28 28 N 1.30838 * 108.20228 * 359.74927 * 7 6 5 29 29 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46739 * 60.00167 * 1 2 3 31 31 H 1.08997 * 109.47539 * 299.99944 * 1 2 3 32 32 H 1.08999 * 109.47150 * 120.00147 * 2 1 3 33 33 H 1.09002 * 109.47174 * 299.99567 * 3 2 1 34 34 H 1.09003 * 109.47345 * 60.00158 * 3 2 1 35 35 H 1.09000 * 109.46898 * 179.97438 * 3 2 1 36 36 H 1.08004 * 126.13336 * 359.97438 * 5 4 2 37 37 H 1.08000 * 126.03948 * 180.16259 * 6 5 4 38 38 H 1.09003 * 109.46878 * 120.00263 * 8 7 6 39 39 H 1.08998 * 109.47380 * 240.00440 * 8 7 6 40 40 H 0.97007 * 119.99968 * 180.02562 * 17 16 14 41 41 H 1.08006 * 120.00087 * 0.02562 * 23 22 12 42 42 H 1.07999 * 120.00046 * 180.23802 * 24 23 22 43 43 H 1.07991 * 119.99711 * 179.83360 * 25 24 23 44 44 H 1.08006 * 120.00177 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00297 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1883 -0.1406 -2.4167 6 6 2.6567 -1.1051 -3.2421 7 6 2.7682 -2.2874 -2.5030 8 6 3.2464 -3.6163 -3.0286 9 8 3.5804 -3.4884 -4.4358 10 6 4.0254 -4.5908 -5.0591 11 8 4.1327 -5.6281 -4.4489 12 6 4.3912 -4.5346 -6.5200 13 1 3.5188 -4.2372 -7.1019 14 6 5.4963 -3.5304 -6.7228 15 1 6.2509 -3.3967 -5.9618 16 6 5.5443 -2.7824 -7.8800 17 7 4.5601 -2.8524 -8.7495 18 14 7.0073 -1.6695 -8.2129 19 1 7.9720 -1.7706 -7.0885 20 1 7.6712 -2.0884 -9.4735 21 1 6.5418 -0.2653 -8.3416 22 6 4.8585 -5.8937 -6.9735 23 6 6.0295 -6.4262 -6.4675 24 6 6.4561 -7.6746 -6.8805 25 6 5.7160 -8.3869 -7.8056 26 6 4.5478 -7.8520 -8.3155 27 6 4.1191 -6.6053 -7.8997 28 7 2.3856 -2.0401 -1.2765 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.9884 0.8861 -2.6859 37 1 2.8977 -0.9845 -4.2880 38 1 4.1300 -3.9301 -2.4728 39 1 2.4584 -4.3597 -2.9080 40 1 4.5940 -2.3263 -9.5639 41 1 6.6093 -5.8685 -5.7469 42 1 7.3690 -8.0924 -6.4823 43 1 6.0507 -9.3609 -8.1302 44 1 3.9697 -8.4082 -9.0387 45 1 3.2066 -6.1873 -8.2984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583279277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:19 Heat of formation + Delta-G solvation = -3.375538 kcal Electronic energy + Delta-G solvation = -27082.355963 eV Core-core repulsion = 23258.949295 eV Total energy + Delta-G solvation = -3823.406667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32841 -41.41791 -39.73163 -37.55093 -36.62203 -35.60612 -33.00962 -32.20815 -31.57042 -30.93890 -29.46882 -28.26436 -27.94076 -25.88380 -23.65452 -23.30610 -23.06137 -21.40939 -21.04337 -20.68958 -18.89727 -18.28818 -18.16050 -17.55428 -17.30356 -17.06640 -16.27419 -16.19645 -15.77661 -15.53442 -15.37213 -15.01167 -14.71145 -14.44878 -14.16846 -14.06425 -14.01441 -13.72147 -13.42388 -13.36577 -13.26887 -13.14020 -12.97474 -12.83641 -12.72984 -12.36579 -12.23670 -12.09658 -11.99857 -11.80663 -11.72915 -11.69600 -11.34757 -11.05679 -10.65739 -10.25676 -9.59023 -9.55279 -9.35411 -8.24015 -6.34113 0.69278 0.73610 0.81781 1.31830 1.38435 1.42970 1.48504 1.57674 1.70269 2.02497 2.42032 3.05404 3.21740 3.42188 3.69568 3.90603 3.93171 4.08384 4.09747 4.18049 4.20742 4.27269 4.28589 4.40209 4.47264 4.51377 4.65099 4.75190 4.78612 4.82672 4.83246 4.91111 4.91682 5.05564 5.07493 5.17715 5.22607 5.31140 5.39433 5.49790 5.56681 5.62078 5.76231 5.78583 5.86855 6.14526 6.14717 6.36903 6.61644 6.67351 7.02337 7.31850 8.85937 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003100 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.583521 B = 9029.401443 C =10447.252383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 C -0.158 4.158 4 N -0.360 5.360 5 C 0.070 3.930 6 C -0.274 4.274 7 C 0.055 3.945 8 C 0.148 3.852 9 O -0.342 6.342 10 C 0.480 3.520 11 O -0.547 6.547 12 C 0.078 3.922 13 H 0.081 0.919 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.037 3.963 17 N -0.906 5.906 18 Si 0.958 3.042 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.272 1.272 22 C -0.050 4.050 23 C -0.110 4.110 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.138 4.138 28 N -0.316 5.316 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.214 0.786 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.270 0.730 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 5.950 11.908 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 C -0.216 4.216 4 N -0.144 5.144 5 C -0.076 4.076 6 C -0.303 4.303 7 C -0.109 4.109 8 C 0.072 3.928 9 O -0.258 6.258 10 C 0.326 3.674 11 O -0.438 6.438 12 C 0.059 3.941 13 H 0.098 0.902 14 C -0.557 4.557 15 H 0.072 0.928 16 C -0.166 4.166 17 N -0.542 5.542 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.198 1.198 22 C -0.051 4.051 23 C -0.129 4.129 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.145 4.145 27 C -0.156 4.156 28 N -0.141 5.141 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.231 0.769 37 H 0.160 0.840 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.021 5.341 13.239 15.494 hybrid contribution 0.740 0.798 -1.044 1.508 sum -5.281 6.138 12.195 14.639 Atomic orbital electron populations 1.22223 0.92395 1.02493 1.04588 1.21699 0.95757 0.93826 0.84310 1.22205 1.01811 0.92133 1.05469 1.49193 1.49634 1.05868 1.09711 1.22934 0.99203 1.00916 0.84586 1.21526 1.13913 0.92514 1.02345 1.21681 1.00769 0.96066 0.92358 1.20652 1.00500 0.92324 0.79291 1.86561 1.75814 1.38911 1.24468 1.24893 0.70920 0.79788 0.91829 1.90524 1.52287 1.32365 1.68674 1.17772 0.99559 0.92816 0.83970 0.90163 1.20712 1.09952 1.20647 1.04397 0.92797 1.25584 0.98322 0.97115 0.95537 1.69973 1.31850 1.41517 1.10882 0.85502 0.79401 0.78627 0.78201 1.19361 1.20310 1.19751 1.20009 0.95014 0.93931 0.96107 1.20908 0.96080 0.96131 0.99733 1.21348 1.00753 0.94316 0.98598 1.21340 0.95348 1.00868 0.97872 1.21329 0.97582 0.95029 1.00534 1.21159 1.00121 0.95683 0.98659 1.77108 1.22873 0.95801 1.18365 0.93684 0.91546 0.87593 0.88197 0.90387 0.87322 0.92392 0.76940 0.83984 0.90088 0.89709 0.92077 0.88403 0.84291 0.83180 0.83849 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.52 71.98 0.69 -1.30 16 2 C 0.14 2.24 3.93 44.99 0.18 2.42 16 3 C -0.16 -1.49 8.84 71.98 0.64 -0.86 16 4 N -0.36 -9.06 3.52 -327.48 -1.15 -10.21 16 5 C 0.07 1.73 10.59 83.54 0.89 2.62 16 6 C -0.27 -9.17 10.14 21.99 0.22 -8.95 16 7 C 0.06 2.01 7.19 43.10 0.31 2.32 16 8 C 0.15 5.77 6.09 71.24 0.43 6.21 16 9 O -0.34 -15.68 9.47 -51.36 -0.49 -16.17 16 10 C 0.48 23.58 7.14 71.24 0.51 24.09 16 11 O -0.55 -27.42 15.17 21.98 0.33 -27.09 16 12 C 0.08 4.03 2.55 -13.03 -0.03 4.00 16 13 H 0.08 4.45 7.00 -2.39 -0.02 4.44 16 14 C -0.52 -28.12 7.59 25.60 0.19 -27.93 16 15 H 0.05 2.95 7.82 -2.91 -0.02 2.93 16 16 C 0.04 1.94 5.45 84.65 0.46 2.41 16 17 N -0.91 -49.93 12.78 21.45 0.27 -49.65 16 18 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C -0.05 -2.41 4.30 -19.87 -0.09 -2.49 16 23 C -0.11 -4.96 8.31 22.27 0.19 -4.77 16 24 C -0.13 -4.85 10.05 22.27 0.22 -4.63 16 25 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 26 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 27 C -0.14 -6.00 9.67 22.27 0.22 -5.78 16 28 N -0.32 -10.52 12.58 -47.38 -0.60 -11.11 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 0.60 7.16 -2.39 -0.02 0.58 16 34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.21 3.25 7.27 -2.91 -0.02 3.23 16 37 H 0.14 5.15 7.90 -2.91 -0.02 5.13 16 38 H 0.08 3.11 8.13 -2.39 -0.02 3.09 16 39 H 0.08 3.17 8.13 -2.39 -0.02 3.15 16 40 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 41 H 0.10 4.55 7.89 -2.91 -0.02 4.53 16 42 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 43 H 0.15 3.65 8.06 -2.92 -0.02 3.62 16 44 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.11 4.74 7.96 -2.91 -0.02 4.72 16 Total: -1.00 -69.50 386.44 6.84 -62.66 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.98 Total: 28.34 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.47 Total: -21.19 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.48 Total: -70.98 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.15 Total: -43.26 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -69.50 6.84 -62.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583279277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.280 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds