Wall clock time and date at job start Tue Mar 31 2020 16:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47242 * 2 1 4 4 N 1.46905 * 109.47303 * 120.00181 * 2 1 3 5 5 C 1.47025 * 110.99829 * 298.95451 * 4 2 1 6 6 C 1.53093 * 109.40003 * 182.99379 * 5 4 2 7 7 O 1.43200 * 109.16554 * 302.45365 * 6 5 4 8 8 C 1.41958 * 113.87159 * 57.07768 * 7 6 5 9 9 C 1.54609 * 110.56990 * 180.42965 * 8 7 6 10 10 C 1.54468 * 102.75733 * 276.32613 * 9 8 7 11 11 N 1.47082 * 107.42506 * 338.66117 * 10 9 8 12 12 C 1.34777 * 125.63023 * 178.91798 * 11 10 9 13 13 O 1.21284 * 120.00058 * 180.02562 * 12 11 10 14 14 C 1.50691 * 120.00248 * 0.02562 * 12 11 10 15 15 S 1.80994 * 109.47508 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00165 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99769 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99804 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00036 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00263 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46770 * 89.99920 * 20 18 16 22 22 H 1.48499 * 109.47201 * 210.00087 * 20 18 16 23 23 H 1.48496 * 109.46939 * 329.99938 * 20 18 16 24 24 C 1.47569 * 108.74057 * 358.91872 * 11 10 9 25 25 C 1.47177 * 110.99754 * 62.44814 * 4 2 1 26 26 H 1.09003 * 109.46708 * 299.99978 * 1 2 3 27 27 H 1.09001 * 109.46847 * 59.99773 * 1 2 3 28 28 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47277 * 240.00300 * 2 1 3 30 30 H 1.09004 * 109.47066 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47270 * 300.00174 * 3 2 1 32 32 H 1.08995 * 109.46740 * 59.99971 * 3 2 1 33 33 H 1.09002 * 109.48483 * 63.01107 * 5 4 2 34 34 H 1.08999 * 109.49334 * 302.98306 * 5 4 2 35 35 H 1.08999 * 109.52401 * 182.53714 * 6 5 4 36 36 H 1.09009 * 109.51955 * 62.35250 * 6 5 4 37 37 H 1.08996 * 110.71167 * 158.05708 * 9 8 7 38 38 H 1.08999 * 110.86222 * 34.66543 * 9 8 7 39 39 H 1.09002 * 109.87908 * 219.16081 * 10 9 8 40 40 H 1.08996 * 109.87788 * 98.15942 * 10 9 8 41 41 H 1.09007 * 109.47172 * 300.00466 * 14 12 11 42 42 H 1.09006 * 109.47013 * 60.00157 * 14 12 11 43 43 H 0.96994 * 120.00183 * 180.02562 * 19 18 16 44 44 H 1.09002 * 110.38074 * 142.16027 * 24 11 10 45 45 H 1.09000 * 110.38216 * 264.40143 * 24 11 10 46 46 H 1.09000 * 109.48977 * 59.20554 * 25 4 2 47 47 H 1.08993 * 109.49244 * 299.12474 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5689 -0.0116 2.4220 6 6 2.1598 -0.7180 3.6449 7 8 1.7639 -2.0941 3.6299 8 6 2.1401 -2.7872 2.4495 9 6 1.6673 -4.2580 2.5092 10 6 2.7921 -4.9455 3.3143 11 7 3.9888 -4.0965 3.2124 12 6 5.1781 -4.3423 3.7970 13 8 6.1002 -3.5695 3.6444 14 6 5.3621 -5.5775 4.6404 15 16 7.0543 -5.6243 5.2808 16 6 6.9916 -7.1254 6.2015 17 1 6.0787 -7.7015 6.2334 18 6 8.1155 -7.5673 6.8857 19 7 8.0686 -8.6884 7.5739 20 14 9.6943 -6.5703 6.8310 21 1 9.7024 -5.5943 7.9502 22 1 10.8598 -7.4814 6.9603 23 1 9.7758 -5.8427 5.5391 24 6 3.6725 -2.9310 2.3643 25 6 1.5963 -2.1021 1.2044 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.4806 -0.0422 2.4750 34 1 1.9028 1.0259 2.4047 35 1 1.7909 -0.2426 4.5538 36 1 3.2474 -0.6515 3.6137 37 1 1.5961 -4.6810 1.5072 38 1 0.7142 -4.3384 3.0320 39 1 2.9994 -5.9301 2.8950 40 1 2.4945 -5.0426 4.3583 41 1 4.6585 -5.5572 5.4728 42 1 5.1796 -6.4634 4.0320 43 1 8.8539 -8.9970 8.0523 44 1 4.1597 -2.0362 2.7517 45 1 3.9814 -3.1152 1.3353 46 1 1.9836 -2.6012 0.3161 47 1 0.5077 -2.1548 1.2062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755400231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:01 Heat of formation + Delta-G solvation = -64.045713 kcal Electronic energy + Delta-G solvation = -26739.815986 eV Core-core repulsion = 23049.222413 eV Total energy + Delta-G solvation = -3690.593572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06092 -39.16731 -37.59924 -36.08259 -32.64044 -32.40276 -31.99067 -29.79291 -29.72880 -27.83660 -27.55216 -25.61632 -25.09249 -24.10412 -22.70042 -20.50118 -19.78363 -19.10580 -17.77534 -17.07901 -16.84034 -16.52080 -15.83669 -15.54677 -15.24451 -15.01242 -14.87849 -14.66567 -14.57840 -14.24622 -13.95735 -13.73132 -13.44667 -12.96353 -12.84310 -12.68592 -12.62975 -12.45544 -12.40470 -11.99236 -11.86900 -11.80046 -11.63207 -11.55522 -11.44831 -11.22492 -11.04688 -10.97665 -10.58476 -10.56697 -9.91389 -9.80886 -9.44151 -8.96880 -8.70822 -8.46574 -8.45182 -6.87702 -6.25568 -3.96790 2.74763 3.02692 3.24836 3.30971 3.36288 3.38451 3.53911 3.64890 4.22629 4.28882 4.36066 4.37001 4.49691 4.54080 4.69332 4.72078 4.75996 4.81933 4.95496 4.97236 5.10692 5.13480 5.14083 5.16684 5.23567 5.26650 5.32155 5.38122 5.41582 5.47438 5.51057 5.56912 5.57777 5.70703 5.74860 5.76690 5.83779 5.87606 5.95135 6.08088 6.38891 6.55321 6.59680 6.96729 7.66175 7.97639 8.45214 8.51809 9.20762 10.83666 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.002541 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.681594 B =11017.208101 C =11447.645819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.528 5.528 5 C 0.012 3.988 6 C 0.059 3.941 7 O -0.360 6.360 8 C 0.108 3.892 9 C -0.116 4.116 10 C 0.104 3.896 11 N -0.621 5.621 12 C 0.548 3.452 13 O -0.520 6.520 14 C -0.116 4.116 15 S -0.143 6.143 16 C -0.519 4.519 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.235 1.235 24 C 0.099 3.901 25 C 0.037 3.963 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 17.155 -16.121 30.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.033 4.033 3 C -0.204 4.204 4 N -0.252 5.252 5 C -0.116 4.116 6 C -0.018 4.018 7 O -0.278 6.278 8 C 0.066 3.934 9 C -0.154 4.154 10 C -0.019 4.019 11 N -0.358 5.358 12 C 0.336 3.664 13 O -0.394 6.394 14 C -0.267 4.267 15 S 0.083 5.917 16 C -0.667 4.667 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.024 4.024 25 C -0.092 4.092 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.978 18.067 -16.040 30.114 hybrid contribution -1.222 -0.606 0.178 1.375 sum -19.200 17.461 -15.862 30.416 Atomic orbital electron populations 1.22491 0.97529 1.02176 1.02515 1.21734 0.92716 0.95644 0.93167 1.21887 1.02204 0.94596 1.01751 1.62561 1.59037 1.01626 1.01999 1.22879 0.98723 0.99502 0.90475 1.22776 1.00143 0.81438 0.97447 1.87885 1.79133 1.22521 1.38300 1.21975 0.93688 0.92308 0.85382 1.22630 0.99279 0.91800 1.01704 1.22005 0.84567 0.94280 1.01066 1.48438 1.11290 1.24775 1.51311 1.19947 0.80444 0.87090 0.78901 1.90699 1.39474 1.48439 1.60831 1.23247 1.04374 0.97645 1.01426 1.84774 1.08822 1.33733 1.64370 1.22314 1.02811 1.06940 1.34625 0.89395 1.24713 0.98555 0.94509 0.93565 1.69939 1.30557 1.20690 1.30591 0.86732 0.82836 0.80797 0.81481 1.19223 1.19978 1.15900 1.22505 0.94321 0.90269 0.95323 1.22538 0.99031 0.89288 0.98302 0.92300 0.91907 0.92372 0.89665 0.91539 0.92130 0.92497 0.93573 0.89193 0.88191 0.91707 0.89005 0.88830 0.90966 0.90833 0.88597 0.88601 0.91980 0.89716 0.90857 0.89228 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 8.49 37.16 0.32 -0.72 16 2 C 0.08 0.48 3.00 -67.71 -0.20 0.27 16 3 C -0.15 -0.84 8.93 37.16 0.33 -0.51 16 4 N -0.53 -4.19 4.61 -226.77 -1.05 -5.23 16 5 C 0.01 0.09 4.84 -3.71 -0.02 0.08 16 6 C 0.06 0.56 6.79 37.21 0.25 0.81 16 7 O -0.36 -4.10 10.33 -35.23 -0.36 -4.46 16 8 C 0.11 1.06 0.83 -89.60 -0.07 0.99 16 9 C -0.12 -0.97 6.14 -25.12 -0.15 -1.13 16 10 C 0.10 1.17 6.49 -2.95 -0.02 1.15 16 11 N -0.62 -9.31 3.33 -170.75 -0.57 -9.88 16 12 C 0.55 10.70 7.87 -10.99 -0.09 10.62 16 13 O -0.52 -12.03 16.13 5.55 0.09 -11.95 16 14 C -0.12 -2.40 5.35 36.00 0.19 -2.21 16 15 S -0.14 -3.76 18.55 -107.50 -1.99 -5.75 16 16 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.89 13.97 55.49 0.78 -26.12 16 20 Si 0.86 22.15 27.74 -169.99 -4.72 17.44 16 21 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 24 C 0.10 1.27 5.80 -2.86 -0.02 1.25 16 25 C 0.04 0.29 3.96 -4.10 -0.02 0.27 16 26 H 0.06 0.34 6.49 -51.93 -0.34 0.01 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 6.48 -51.93 -0.34 -0.01 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 6.32 -51.93 -0.33 -0.01 16 33 H 0.05 0.35 6.49 -51.93 -0.34 0.01 16 34 H 0.09 0.60 6.13 -51.93 -0.32 0.28 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.72 6.50 -51.92 -0.34 0.38 16 37 H 0.09 0.58 8.00 -51.93 -0.42 0.16 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.87 8.14 -51.91 -0.42 1.45 16 42 H 0.10 1.84 8.14 -51.91 -0.42 1.41 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.08 1.26 6.23 -51.93 -0.32 0.93 16 45 H 0.07 0.90 7.90 -51.93 -0.41 0.48 16 46 H 0.09 0.62 8.00 -51.93 -0.42 0.21 16 47 H 0.05 0.38 6.41 -51.93 -0.33 0.04 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.79 372.37 -9.19 -43.98 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.70 Total: -2.33 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 0.72 Total: -1.32 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.84 Total: -41.23 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.27 Total: -16.41 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.72 Total: 17.44 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.79 -9.19 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755400231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.063 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds