Wall clock time and date at job start Tue Mar 31 2020 16:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47242 * 2 1 4 4 N 1.46905 * 109.47303 * 120.00181 * 2 1 3 5 5 C 1.47025 * 110.99829 * 298.95451 * 4 2 1 6 6 C 1.53093 * 109.40003 * 182.99379 * 5 4 2 7 7 O 1.43200 * 109.16554 * 302.45365 * 6 5 4 8 8 C 1.41958 * 113.87159 * 57.07768 * 7 6 5 9 9 C 1.54609 * 110.56990 * 180.42965 * 8 7 6 10 10 C 1.54468 * 102.75733 * 276.32613 * 9 8 7 11 11 N 1.47082 * 107.42506 * 338.66117 * 10 9 8 12 12 C 1.34777 * 125.63023 * 178.91798 * 11 10 9 13 13 O 1.21284 * 120.00058 * 180.02562 * 12 11 10 14 14 C 1.50691 * 120.00248 * 0.02562 * 12 11 10 15 15 S 1.80994 * 109.47508 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00165 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99769 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99804 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00036 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00263 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46770 * 89.99920 * 20 18 16 22 22 H 1.48499 * 109.47201 * 210.00087 * 20 18 16 23 23 H 1.48496 * 109.46939 * 329.99938 * 20 18 16 24 24 C 1.47569 * 108.74057 * 358.91872 * 11 10 9 25 25 C 1.47177 * 110.99754 * 62.44814 * 4 2 1 26 26 H 1.09003 * 109.46708 * 299.99978 * 1 2 3 27 27 H 1.09001 * 109.46847 * 59.99773 * 1 2 3 28 28 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47277 * 240.00300 * 2 1 3 30 30 H 1.09004 * 109.47066 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47270 * 300.00174 * 3 2 1 32 32 H 1.08995 * 109.46740 * 59.99971 * 3 2 1 33 33 H 1.09002 * 109.48483 * 63.01107 * 5 4 2 34 34 H 1.08999 * 109.49334 * 302.98306 * 5 4 2 35 35 H 1.08999 * 109.52401 * 182.53714 * 6 5 4 36 36 H 1.09009 * 109.51955 * 62.35250 * 6 5 4 37 37 H 1.08996 * 110.71167 * 158.05708 * 9 8 7 38 38 H 1.08999 * 110.86222 * 34.66543 * 9 8 7 39 39 H 1.09002 * 109.87908 * 219.16081 * 10 9 8 40 40 H 1.08996 * 109.87788 * 98.15942 * 10 9 8 41 41 H 1.09007 * 109.47172 * 300.00466 * 14 12 11 42 42 H 1.09006 * 109.47013 * 60.00157 * 14 12 11 43 43 H 0.96994 * 120.00183 * 180.02562 * 19 18 16 44 44 H 1.09002 * 110.38074 * 142.16027 * 24 11 10 45 45 H 1.09000 * 110.38216 * 264.40143 * 24 11 10 46 46 H 1.09000 * 109.48977 * 59.20554 * 25 4 2 47 47 H 1.08993 * 109.49244 * 299.12474 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5689 -0.0116 2.4220 6 6 2.1598 -0.7180 3.6449 7 8 1.7639 -2.0941 3.6299 8 6 2.1401 -2.7872 2.4495 9 6 1.6673 -4.2580 2.5092 10 6 2.7921 -4.9455 3.3143 11 7 3.9888 -4.0965 3.2124 12 6 5.1781 -4.3423 3.7970 13 8 6.1002 -3.5695 3.6444 14 6 5.3621 -5.5775 4.6404 15 16 7.0543 -5.6243 5.2808 16 6 6.9916 -7.1254 6.2015 17 1 6.0787 -7.7015 6.2334 18 6 8.1155 -7.5673 6.8857 19 7 8.0686 -8.6884 7.5739 20 14 9.6943 -6.5703 6.8310 21 1 9.7024 -5.5943 7.9502 22 1 10.8598 -7.4814 6.9603 23 1 9.7758 -5.8427 5.5391 24 6 3.6725 -2.9310 2.3643 25 6 1.5963 -2.1021 1.2044 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.4806 -0.0422 2.4750 34 1 1.9028 1.0259 2.4047 35 1 1.7909 -0.2426 4.5538 36 1 3.2474 -0.6515 3.6137 37 1 1.5961 -4.6810 1.5072 38 1 0.7142 -4.3384 3.0320 39 1 2.9994 -5.9301 2.8950 40 1 2.4945 -5.0426 4.3583 41 1 4.6585 -5.5572 5.4728 42 1 5.1796 -6.4634 4.0320 43 1 8.8539 -8.9970 8.0523 44 1 4.1597 -2.0362 2.7517 45 1 3.9814 -3.1152 1.3353 46 1 1.9836 -2.6012 0.3161 47 1 0.5077 -2.1548 1.2062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755400231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:00 Heat of formation + Delta-G solvation = -89.049409 kcal Electronic energy + Delta-G solvation = -26740.900227 eV Core-core repulsion = 23049.222413 eV Total energy + Delta-G solvation = -3691.677814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91052 -40.37503 -38.48837 -37.06462 -34.68419 -33.56895 -32.65533 -31.17818 -30.59366 -28.72315 -28.08759 -27.85226 -25.95766 -24.92140 -23.50928 -21.19353 -20.96577 -20.03815 -19.61657 -18.24181 -17.94585 -17.37887 -17.12993 -16.90844 -16.46272 -16.07896 -15.96607 -15.65579 -15.60979 -15.27048 -15.04876 -14.91703 -14.73753 -14.07326 -13.93951 -13.87575 -13.57471 -13.35022 -13.27389 -13.05188 -13.01598 -12.93774 -12.71327 -12.59538 -12.47097 -12.32525 -12.22373 -12.00943 -11.87477 -11.55899 -11.30551 -11.18139 -11.06861 -10.66302 -10.55587 -9.70812 -9.26795 -9.02611 -8.52444 -6.23973 0.94335 1.30516 1.44252 1.49128 1.52538 2.03806 2.24437 2.61613 2.66702 2.76755 2.85478 3.37592 3.49061 3.68779 3.76205 3.92458 3.98095 4.08467 4.12914 4.15434 4.25334 4.30626 4.36683 4.38326 4.45418 4.47976 4.56042 4.65306 4.68603 4.72649 4.77770 4.81253 4.90101 4.91700 4.95472 5.00937 5.08179 5.12012 5.28020 5.30293 5.38067 5.70062 5.98745 6.07379 6.10267 6.18798 6.34094 6.92435 7.03129 8.59944 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.002541 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.681594 B =11017.208101 C =11447.645819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.145 4.145 4 N -0.544 5.544 5 C 0.021 3.979 6 C 0.055 3.945 7 O -0.378 6.378 8 C 0.111 3.889 9 C -0.104 4.104 10 C 0.091 3.909 11 N -0.613 5.613 12 C 0.546 3.454 13 O -0.566 6.566 14 C -0.100 4.100 15 S -0.176 6.176 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.257 1.257 23 H -0.238 1.238 24 C 0.096 3.904 25 C 0.042 3.958 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.041 0.959 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.278 0.722 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.793 17.930 -17.792 33.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.032 4.032 3 C -0.202 4.202 4 N -0.269 5.269 5 C -0.107 4.107 6 C -0.021 4.021 7 O -0.296 6.296 8 C 0.070 3.930 9 C -0.142 4.142 10 C -0.031 4.031 11 N -0.347 5.347 12 C 0.334 3.666 13 O -0.445 6.445 14 C -0.251 4.251 15 S 0.051 5.949 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.181 1.181 23 H -0.162 1.162 24 C -0.026 4.026 25 C -0.086 4.086 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.059 0.941 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.875 18.833 -17.728 32.619 hybrid contribution -0.802 -0.829 0.657 1.327 sum -20.677 18.004 -17.071 32.297 Atomic orbital electron populations 1.22429 0.96588 1.02306 1.02789 1.21772 0.93403 0.95611 0.92426 1.21870 1.01351 0.94598 1.02408 1.62559 1.59753 1.01985 1.02573 1.22780 0.98823 0.99528 0.89597 1.22852 0.98895 0.81225 0.99156 1.87862 1.79042 1.23379 1.39355 1.22068 0.91296 0.93554 0.86106 1.22711 0.98422 0.90058 1.03025 1.22364 0.83982 0.94828 1.01893 1.48426 1.10789 1.25743 1.49733 1.19673 0.81478 0.86280 0.79181 1.90676 1.41408 1.49663 1.62795 1.23183 1.00442 0.99315 1.02141 1.84710 1.13931 1.31915 1.64336 1.22424 1.02037 1.07925 1.35146 0.91916 1.25551 1.01633 0.95508 0.93230 1.70009 1.31895 1.22011 1.31401 0.85875 0.79569 0.79656 0.81317 1.18729 1.18069 1.16203 1.22692 0.96739 0.88312 0.94902 1.22508 0.99626 0.89106 0.97375 0.92631 0.91025 0.92266 0.89441 0.92828 0.90938 0.92395 0.92902 0.88473 0.87099 0.94052 0.86064 0.87258 0.89369 0.91118 0.87543 0.86951 0.91303 0.92252 0.89967 0.87999 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.49 71.98 0.61 -0.89 16 2 C 0.08 0.79 3.00 44.92 0.13 0.92 16 3 C -0.14 -1.43 8.93 71.98 0.64 -0.79 16 4 N -0.54 -7.65 4.61 -871.36 -4.02 -11.67 16 5 C 0.02 0.28 4.84 86.31 0.42 0.70 16 6 C 0.06 1.02 6.79 72.01 0.49 1.51 16 7 O -0.38 -8.08 10.33 -148.96 -1.54 -9.62 16 8 C 0.11 1.95 0.83 -10.13 -0.01 1.94 16 9 C -0.10 -1.39 6.14 31.64 0.19 -1.20 16 10 C 0.09 1.85 6.49 86.77 0.56 2.41 16 11 N -0.61 -17.79 3.33 -812.51 -2.71 -20.50 16 12 C 0.55 21.32 7.87 87.65 0.69 22.01 16 13 O -0.57 -26.75 16.13 -3.04 -0.05 -26.80 16 14 C -0.10 -4.10 5.35 71.23 0.38 -3.72 16 15 S -0.18 -9.27 18.55 -56.49 -1.05 -10.32 16 16 C -0.53 -31.46 10.04 67.95 0.68 -30.78 16 17 H 0.06 3.93 8.03 -2.91 -0.02 3.90 16 18 C 0.05 2.77 5.50 84.86 0.47 3.23 16 19 N -0.92 -56.36 13.97 21.65 0.30 -56.06 16 20 Si 0.91 45.90 27.74 68.60 1.90 47.80 16 21 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 24 C 0.10 2.38 5.80 86.56 0.50 2.88 16 25 C 0.04 0.54 3.96 85.98 0.34 0.88 16 26 H 0.05 0.51 6.49 -2.39 -0.02 0.49 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.49 6.48 -2.39 -0.02 0.47 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.56 6.32 -2.39 -0.02 0.54 16 33 H 0.05 0.68 6.49 -2.39 -0.02 0.66 16 34 H 0.10 1.18 6.13 -2.39 -0.01 1.17 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 0.95 6.50 -2.38 -0.02 0.94 16 37 H 0.12 0.96 8.00 -2.39 -0.02 0.94 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 42 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 43 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.06 1.80 6.23 -2.39 -0.01 1.79 16 45 H 0.08 1.90 7.90 -2.39 -0.02 1.88 16 46 H 0.10 1.07 8.00 -2.39 -0.02 1.05 16 47 H 0.06 0.70 6.41 -2.39 -0.02 0.68 16 Total: -1.00 -76.49 372.37 -0.13 -76.62 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.92 Total: 11.41 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.11 Total: -0.88 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -6.42 Total: -88.22 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.59 Total: -36.42 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.05 Total: -10.32 kcal Total: -76.49 -0.13 -76.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755400231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.424 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds