Wall clock time and date at job start Tue Mar 31 2020 15:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 3 10 10 C 1.53787 * 113.61653 * 254.13757 * 9 8 6 11 11 C 1.53947 * 87.01990 * 220.05143 * 10 9 8 12 12 C 1.53007 * 113.66763 * 139.93121 * 11 10 9 13 13 N 1.46497 * 109.46734 * 87.43991 * 12 11 10 14 14 C 1.34778 * 119.99756 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99759 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.46857 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99682 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00552 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99502 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00479 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99792 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46910 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46972 * 120.00051 * 22 20 18 25 25 H 1.48500 * 109.46890 * 239.99897 * 22 20 18 26 26 C 1.53784 * 113.61126 * 156.53132 * 9 8 6 27 27 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 29 29 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 30 30 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 31 31 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 32 32 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 33 33 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 34 34 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 35 35 H 0.96995 * 120.00011 * 0.02562 * 8 6 3 36 36 H 1.09003 * 112.85056 * 25.34023 * 9 8 6 37 37 H 1.08995 * 113.61076 * 334.57310 * 10 9 8 38 38 H 1.08995 * 113.61025 * 105.47189 * 10 9 8 39 39 H 1.09004 * 113.61751 * 270.80230 * 11 10 9 40 40 H 1.08994 * 109.47118 * 207.43797 * 12 11 10 41 41 H 1.09001 * 109.46867 * 327.44186 * 12 11 10 42 42 H 0.97004 * 120.00271 * 0.02562 * 13 12 11 43 43 H 1.08994 * 109.47401 * 299.99709 * 16 14 13 44 44 H 1.09001 * 109.47039 * 60.00376 * 16 14 13 45 45 H 0.96995 * 120.00618 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.61799 * 254.52676 * 26 9 8 47 47 H 1.09002 * 113.61278 * 25.35275 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1450 0.3950 0.2038 8 7 4.2150 2.6117 0.1449 9 6 5.6750 2.6134 0.2648 10 6 6.1786 3.0387 1.6542 11 6 7.2874 3.8190 0.9249 12 6 7.5896 5.1835 1.5476 13 7 8.5902 5.0263 2.6061 14 6 9.0128 6.1022 3.2991 15 8 8.5651 7.2006 3.0461 16 6 10.0416 5.9404 4.3883 17 16 10.3982 7.5544 5.1260 18 6 11.5947 7.0826 6.3303 19 1 11.8860 6.0471 6.4254 20 6 12.1628 8.0421 7.1569 21 7 11.8083 9.3044 7.0407 22 14 13.4309 7.5419 8.4343 23 1 13.6542 6.0755 8.3623 24 1 14.7084 8.2504 8.1674 25 1 12.9384 7.9024 9.7881 26 6 6.3365 3.8896 -0.2817 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 2.0700 1.5874 -2.1492 33 1 0.5490 2.1252 -1.3970 34 1 1.9982 3.1542 -1.3072 35 1 3.7326 3.4508 0.0806 36 1 6.1309 1.6938 -0.1023 37 1 5.4797 3.6763 2.1955 38 1 6.5505 2.2098 2.2563 39 1 8.1857 3.2302 0.7389 40 1 7.9745 5.8556 0.7808 41 1 6.6756 5.6002 1.9707 42 1 8.9485 4.1478 2.8082 43 1 9.6565 5.2681 5.1549 44 1 10.9559 5.5238 3.9655 45 1 12.2050 9.9748 7.6186 46 1 6.8358 3.7466 -1.2400 47 1 5.6804 4.7600 -0.2719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755929627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:42 Heat of formation + Delta-G solvation = -81.095669 kcal Electronic energy + Delta-G solvation = -24457.696696 eV Core-core repulsion = 20766.363782 eV Total energy + Delta-G solvation = -3691.332914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73088 -39.47645 -38.57140 -35.82750 -34.71535 -33.42011 -32.42925 -30.33266 -29.71578 -27.20322 -26.12148 -25.78355 -25.44477 -23.30687 -21.56238 -20.71780 -20.33505 -19.58692 -17.85645 -17.47365 -16.92319 -16.27915 -15.94291 -15.84363 -15.55289 -15.12435 -14.81225 -14.79337 -14.56268 -13.98979 -13.91184 -13.72777 -13.19222 -13.12870 -12.87696 -12.69609 -12.61992 -12.53918 -12.33592 -12.13247 -12.08601 -11.83154 -11.52793 -11.28263 -11.13866 -11.07380 -11.06338 -11.01820 -10.75231 -10.70713 -10.02733 -9.80276 -9.40115 -9.37066 -9.07823 -8.86674 -8.23142 -6.49952 -6.21867 -3.92260 2.27011 2.77854 3.04921 3.10727 3.21607 3.28460 3.33345 3.70518 4.06877 4.19724 4.20464 4.24590 4.29923 4.40578 4.43889 4.48715 4.80608 4.89373 4.96375 5.01847 5.06344 5.13457 5.16188 5.18783 5.30469 5.32973 5.37021 5.39153 5.45914 5.47428 5.58063 5.63939 5.64482 5.72049 5.77670 5.81463 5.90041 5.90676 5.98813 6.14811 6.20043 6.63230 7.11675 7.60007 7.71912 7.86173 8.35508 8.62118 9.23709 10.85654 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.001595 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.744623 B =17545.544145 C =17832.332339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.146 4.146 6 C 0.517 3.483 7 O -0.540 6.540 8 N -0.720 5.720 9 C 0.121 3.879 10 C -0.146 4.146 11 C -0.120 4.120 12 C 0.134 3.866 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.078 0.922 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 -17.088 -17.853 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.134 4.134 4 H 0.116 0.884 5 C -0.203 4.203 6 C 0.304 3.696 7 O -0.416 6.416 8 N -0.371 5.371 9 C 0.016 3.984 10 C -0.185 4.185 11 C -0.139 4.139 12 C 0.010 3.990 13 N -0.393 5.393 14 C 0.317 3.683 15 O -0.394 6.394 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.236 0.764 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.647 -15.826 -18.167 31.731 hybrid contribution 1.329 -1.517 1.245 2.370 sum -19.319 -17.343 -16.922 30.989 Atomic orbital electron populations 1.21848 0.95403 1.02009 1.01900 1.21342 0.95417 0.94083 1.03527 1.21387 0.91791 0.99617 1.00648 0.88441 1.21832 1.02530 1.00140 0.95806 1.20769 0.90060 0.83641 0.75169 1.90702 1.70361 1.31464 1.49114 1.46045 1.07431 1.08753 1.74868 1.22525 0.79626 0.99360 0.96873 1.23598 0.97738 1.00333 0.96843 1.22639 0.97908 0.96682 0.96697 1.21223 0.92288 0.95573 0.89915 1.45993 1.44580 1.10672 1.38006 1.20312 0.82058 0.83948 0.81978 1.90697 1.56691 1.25277 1.66716 1.23533 0.99628 1.08150 0.99113 1.85386 1.53836 1.01703 1.42563 1.22916 1.27135 0.96785 1.21500 0.90868 1.24992 0.96906 0.94471 0.97210 1.70023 1.41695 1.00565 1.38023 0.86117 0.80324 0.78682 0.80363 1.19615 1.20565 1.20566 1.23316 0.98089 0.97657 0.98304 0.92409 0.92644 0.92430 0.91342 0.91103 0.92033 0.91060 0.92161 0.76420 0.86781 0.89360 0.90738 0.88105 0.91466 0.91571 0.76798 0.89245 0.89228 0.92242 0.90299 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.67 37.15 0.36 -0.34 16 2 C -0.11 -0.68 4.75 -26.74 -0.13 -0.80 16 3 C -0.11 -0.63 2.72 -91.77 -0.25 -0.88 16 4 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.57 8.84 37.16 0.33 -0.24 16 6 C 0.52 4.36 7.15 -10.98 -0.08 4.28 16 7 O -0.54 -6.78 15.54 5.56 0.09 -6.69 16 8 N -0.72 -4.62 5.25 -53.01 -0.28 -4.90 16 9 C 0.12 0.86 4.21 -67.11 -0.28 0.58 16 10 C -0.15 -1.11 7.45 -25.83 -0.19 -1.30 16 11 C -0.12 -0.88 3.75 -89.71 -0.34 -1.21 16 12 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 13 N -0.74 -9.52 5.56 -60.29 -0.33 -9.85 16 14 C 0.53 9.83 7.85 -10.98 -0.09 9.74 16 15 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.13 -0.80 7.39 -25.91 -0.19 -0.99 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 6.57 -51.92 -0.34 -0.13 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.56 7.96 -51.92 -0.41 0.14 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.21 6.56 -51.93 -0.34 -0.13 16 34 H 0.06 0.17 7.56 -51.93 -0.39 -0.22 16 35 H 0.40 1.62 8.13 -40.82 -0.33 1.29 16 36 H 0.11 0.98 7.50 -51.93 -0.39 0.59 16 37 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 42 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.47 8.07 -51.93 -0.42 0.06 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -36.53 399.59 -9.37 -45.89 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.99 Total: -0.25 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.46 Total: -5.63 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.12 Total: -40.22 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.53 -9.37 -45.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755929627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.201 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds