Wall clock time and date at job start Tue Mar 31 2020 15:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 3 10 10 C 1.53787 * 113.61653 * 254.13757 * 9 8 6 11 11 C 1.53947 * 87.01990 * 220.05143 * 10 9 8 12 12 C 1.53007 * 113.66763 * 139.93121 * 11 10 9 13 13 N 1.46497 * 109.46734 * 87.43991 * 12 11 10 14 14 C 1.34778 * 119.99756 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99759 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.46857 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99682 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00552 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99502 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00479 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99792 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46910 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46972 * 120.00051 * 22 20 18 25 25 H 1.48500 * 109.46890 * 239.99897 * 22 20 18 26 26 C 1.53784 * 113.61126 * 156.53132 * 9 8 6 27 27 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 29 29 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 30 30 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 31 31 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 32 32 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 33 33 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 34 34 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 35 35 H 0.96995 * 120.00011 * 0.02562 * 8 6 3 36 36 H 1.09003 * 112.85056 * 25.34023 * 9 8 6 37 37 H 1.08995 * 113.61076 * 334.57310 * 10 9 8 38 38 H 1.08995 * 113.61025 * 105.47189 * 10 9 8 39 39 H 1.09004 * 113.61751 * 270.80230 * 11 10 9 40 40 H 1.08994 * 109.47118 * 207.43797 * 12 11 10 41 41 H 1.09001 * 109.46867 * 327.44186 * 12 11 10 42 42 H 0.97004 * 120.00271 * 0.02562 * 13 12 11 43 43 H 1.08994 * 109.47401 * 299.99709 * 16 14 13 44 44 H 1.09001 * 109.47039 * 60.00376 * 16 14 13 45 45 H 0.96995 * 120.00618 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.61799 * 254.52676 * 26 9 8 47 47 H 1.09002 * 113.61278 * 25.35275 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1450 0.3950 0.2038 8 7 4.2150 2.6117 0.1449 9 6 5.6750 2.6134 0.2648 10 6 6.1786 3.0387 1.6542 11 6 7.2874 3.8190 0.9249 12 6 7.5896 5.1835 1.5476 13 7 8.5902 5.0263 2.6061 14 6 9.0128 6.1022 3.2991 15 8 8.5651 7.2006 3.0461 16 6 10.0416 5.9404 4.3883 17 16 10.3982 7.5544 5.1260 18 6 11.5947 7.0826 6.3303 19 1 11.8860 6.0471 6.4254 20 6 12.1628 8.0421 7.1569 21 7 11.8083 9.3044 7.0407 22 14 13.4309 7.5419 8.4343 23 1 13.6542 6.0755 8.3623 24 1 14.7084 8.2504 8.1674 25 1 12.9384 7.9024 9.7881 26 6 6.3365 3.8896 -0.2817 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 2.0700 1.5874 -2.1492 33 1 0.5490 2.1252 -1.3970 34 1 1.9982 3.1542 -1.3072 35 1 3.7326 3.4508 0.0806 36 1 6.1309 1.6938 -0.1023 37 1 5.4797 3.6763 2.1955 38 1 6.5505 2.2098 2.2563 39 1 8.1857 3.2302 0.7389 40 1 7.9745 5.8556 0.7808 41 1 6.6756 5.6002 1.9707 42 1 8.9485 4.1478 2.8082 43 1 9.6565 5.2681 5.1549 44 1 10.9559 5.5238 3.9655 45 1 12.2050 9.9748 7.6186 46 1 6.8358 3.7466 -1.2400 47 1 5.6804 4.7600 -0.2719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755929627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:40 Heat of formation + Delta-G solvation = -106.914698 kcal Electronic energy + Delta-G solvation = -24458.816293 eV Core-core repulsion = 20766.363782 eV Total energy + Delta-G solvation = -3692.452511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39612 -40.60726 -39.51256 -36.35798 -35.77258 -34.58863 -34.27340 -31.39555 -30.51968 -28.26154 -27.58065 -26.68609 -26.21533 -23.98237 -22.18935 -21.85363 -21.11485 -20.31640 -19.74096 -18.04662 -17.89518 -17.61792 -16.89009 -16.80134 -16.69108 -16.49897 -16.11714 -15.72569 -15.43684 -15.22348 -14.70893 -14.64682 -14.43089 -14.38148 -13.71045 -13.51425 -13.41461 -13.24596 -13.16014 -12.97214 -12.94351 -12.90029 -12.62083 -12.55778 -12.50603 -12.22549 -11.78402 -11.71073 -11.64242 -11.59870 -11.38469 -11.15991 -10.92858 -10.67130 -10.27415 -10.09195 -9.98007 -8.66566 -8.35038 -6.12896 1.27650 1.41253 1.47493 1.58673 1.62790 1.63241 2.20583 2.26863 2.36199 2.99256 3.31782 3.47925 3.58362 3.70105 3.80196 3.83807 3.88656 4.00721 4.03505 4.27315 4.30140 4.39956 4.47764 4.51843 4.53613 4.61684 4.71095 4.73968 4.78382 4.84532 4.88076 4.98518 5.03371 5.04053 5.09872 5.12065 5.20571 5.30418 5.37700 5.42115 5.49012 5.50161 5.63281 6.19932 6.52592 6.57891 7.06567 7.26296 7.27431 8.74469 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.001595 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.744623 B =17545.544145 C =17832.332339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.108 4.108 4 H 0.115 0.885 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.588 6.588 8 N -0.709 5.709 9 C 0.120 3.880 10 C -0.146 4.146 11 C -0.110 4.110 12 C 0.134 3.866 13 N -0.712 5.712 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.151 6.151 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.089 0.911 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.721 -18.280 -18.288 33.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.129 4.129 4 H 0.133 0.867 5 C -0.199 4.199 6 C 0.300 3.700 7 O -0.468 6.468 8 N -0.360 5.360 9 C 0.014 3.986 10 C -0.185 4.185 11 C -0.129 4.129 12 C 0.010 3.990 13 N -0.366 5.366 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.282 4.282 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.160 4.160 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.252 0.748 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.044 -17.045 -18.631 32.871 hybrid contribution 1.377 -1.224 1.298 2.254 sum -19.667 -18.270 -17.333 31.953 Atomic orbital electron populations 1.21818 0.93714 1.02320 1.02813 1.21315 0.96824 0.94459 1.01816 1.21414 0.89697 0.99436 1.02385 0.86706 1.21835 1.03429 1.00511 0.94152 1.21317 0.91248 0.83292 0.74188 1.90680 1.71476 1.33194 1.51492 1.45973 1.07285 1.08971 1.73731 1.22423 0.80027 0.99357 0.96749 1.23586 0.97845 1.00066 0.96978 1.22575 0.98569 0.94632 0.97100 1.21387 0.91117 0.97554 0.88936 1.45779 1.43813 1.09978 1.37011 1.20041 0.81711 0.84425 0.82009 1.90685 1.58382 1.27324 1.68176 1.23387 1.01322 1.03599 0.99904 1.85545 1.54512 1.08448 1.43916 1.23246 1.27223 0.97322 1.21693 0.89972 1.26114 0.99132 0.94292 0.99520 1.70180 1.43263 1.01980 1.39324 0.84911 0.77083 0.78963 0.77011 1.18112 1.19894 1.19913 1.23275 0.97459 0.97215 0.98044 0.92499 0.91953 0.91189 0.92762 0.93216 0.93040 0.89632 0.90666 0.74769 0.88299 0.89506 0.91415 0.86930 0.91960 0.92125 0.74789 0.87375 0.87263 0.91973 0.89205 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 71.98 0.70 -0.47 16 2 C -0.11 -1.34 4.75 30.59 0.15 -1.20 16 3 C -0.11 -1.08 2.72 -11.54 -0.03 -1.11 16 4 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.14 -0.81 8.84 71.98 0.64 -0.18 16 6 C 0.51 8.33 7.15 87.66 0.63 8.96 16 7 O -0.59 -15.14 15.54 -3.03 -0.05 -15.19 16 8 N -0.71 -8.03 5.25 -440.02 -2.31 -10.34 16 9 C 0.12 1.52 4.21 45.52 0.19 1.71 16 10 C -0.15 -1.97 7.45 31.18 0.23 -1.74 16 11 C -0.11 -1.34 3.75 -10.21 -0.04 -1.38 16 12 C 0.13 2.61 5.51 86.38 0.48 3.08 16 13 N -0.71 -16.98 5.56 -463.05 -2.57 -19.56 16 14 C 0.53 19.27 7.85 87.66 0.69 19.96 16 15 O -0.57 -25.91 15.86 -3.02 -0.05 -25.95 16 16 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 17 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 18 C -0.55 -31.30 9.50 67.96 0.65 -30.66 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.81 5.49 84.86 0.47 1.27 16 21 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 22 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C -0.12 -1.13 7.39 31.12 0.23 -0.90 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.38 6.57 -2.38 -0.02 0.37 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.82 7.96 -2.38 -0.02 0.80 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.08 0.28 6.56 -2.39 -0.02 0.26 16 34 H 0.07 0.22 7.56 -2.39 -0.02 0.20 16 35 H 0.41 2.36 8.13 -92.71 -0.75 1.61 16 36 H 0.10 1.64 7.50 -2.39 -0.02 1.62 16 37 H 0.09 1.23 7.90 -2.39 -0.02 1.21 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.30 7.85 -2.39 -0.02 1.29 16 42 H 0.42 7.24 8.47 -92.71 -0.79 6.45 16 43 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.76 8.07 -2.39 -0.02 0.74 16 Total: -1.00 -82.41 399.59 1.01 -81.40 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.57 Total: 16.56 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.40 Total: -7.37 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -4.60 Total: -85.55 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.10 Total: -41.14 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -82.41 1.01 -81.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755929627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.512 kcal (2) G-P(sol) polarization free energy of solvation -82.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds