Wall clock time and date at job start Tue Mar 31 2020 15:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.08994 * 109.47342 * 304.99397 * 3 2 1 5 5 C 1.53000 * 109.47131 * 64.99918 * 3 2 1 6 6 C 1.50701 * 109.46769 * 184.99912 * 3 2 1 7 7 O 1.21280 * 120.00269 * 0.02562 * 6 3 2 8 8 N 1.34781 * 119.99932 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99985 * 179.97438 * 8 6 3 10 10 C 1.53785 * 113.68813 * 105.94035 * 9 8 6 11 11 C 1.53779 * 87.08093 * 139.99098 * 10 9 8 12 12 C 1.52999 * 113.61451 * 220.01770 * 11 10 9 13 13 N 1.46504 * 109.47047 * 272.49902 * 12 11 10 14 14 C 1.34776 * 120.00093 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00176 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47012 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99764 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00100 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99561 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00394 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99610 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47157 * 89.99978 * 22 20 18 24 24 H 1.48500 * 109.47133 * 210.00098 * 22 20 18 25 25 H 1.48505 * 109.47111 * 329.99955 * 22 20 18 26 26 C 1.53781 * 113.61339 * 203.47543 * 9 8 6 27 27 H 1.08999 * 109.46938 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46959 * 300.00343 * 1 2 3 29 29 H 1.09004 * 109.46822 * 59.99740 * 1 2 3 30 30 H 1.08999 * 109.46959 * 239.99657 * 2 1 3 31 31 H 1.08996 * 109.46746 * 119.99943 * 2 1 3 32 32 H 1.08993 * 109.47024 * 299.99935 * 5 3 2 33 33 H 1.09003 * 109.46984 * 60.00200 * 5 3 2 34 34 H 1.09001 * 109.46995 * 179.97438 * 5 3 2 35 35 H 0.96998 * 119.99866 * 0.02562 * 8 6 3 36 36 H 1.09002 * 112.85221 * 334.67013 * 9 8 6 37 37 H 1.09003 * 113.60734 * 254.54218 * 10 9 8 38 38 H 1.08996 * 113.61146 * 25.43716 * 10 9 8 39 39 H 1.09005 * 113.69135 * 89.12376 * 11 10 9 40 40 H 1.09003 * 109.47100 * 32.49589 * 12 11 10 41 41 H 1.08995 * 109.47213 * 152.50009 * 12 11 10 42 42 H 0.97002 * 119.99937 * 359.97438 * 13 12 11 43 43 H 1.09003 * 109.46987 * 300.00052 * 16 14 13 44 44 H 1.08995 * 109.46871 * 60.00193 * 16 14 13 45 45 H 0.96999 * 120.00169 * 180.02562 * 21 20 18 46 46 H 1.09005 * 113.61302 * 334.48230 * 26 9 8 47 47 H 1.08993 * 113.62030 * 105.39076 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3951 -0.2046 8 7 4.2149 2.6118 -0.1458 9 6 5.6750 2.6135 -0.2656 10 6 6.1805 3.0392 -1.6542 11 6 7.2887 3.8175 -0.9254 12 6 7.5923 5.1809 -1.5498 13 7 8.5941 5.0217 -2.6069 14 6 9.0180 6.0965 -3.3009 15 8 8.5698 7.1953 -3.0507 16 6 10.0489 5.9329 -4.3879 17 16 10.4068 7.5455 -5.1276 18 6 11.6057 7.0718 -6.3289 19 1 11.8972 6.0360 -6.4216 20 6 12.1753 8.0298 -7.1560 21 7 11.8205 9.2922 -7.0427 22 14 13.4458 7.5275 -8.4301 23 1 12.7624 7.1917 -9.7050 24 1 14.3911 8.6502 -8.6560 25 1 14.1939 6.3411 -7.9421 26 6 6.3364 3.8902 0.2799 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5490 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 34 1 1.9989 3.1541 1.3075 35 1 3.7326 3.4509 -0.0816 36 1 6.1310 1.6943 0.1022 37 1 6.5527 2.2103 -2.2563 38 1 5.4826 3.6775 -2.1961 39 1 8.1865 3.2286 -0.7376 40 1 6.6789 5.5975 -1.9746 41 1 7.9765 5.8540 -0.7835 42 1 8.9523 4.1428 -2.8072 43 1 10.9623 5.5169 -3.9626 44 1 9.6652 5.2592 -5.1540 45 1 12.2184 9.9617 -7.6210 46 1 5.6811 4.7612 0.2667 47 1 6.8344 3.7484 1.2390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755929628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:48 Heat of formation + Delta-G solvation = -80.964967 kcal Electronic energy + Delta-G solvation = -24457.434359 eV Core-core repulsion = 20766.107113 eV Total energy + Delta-G solvation = -3691.327246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73481 -39.48078 -38.57570 -35.82795 -34.71529 -33.42214 -32.42791 -30.33299 -29.71636 -27.20365 -26.11891 -25.78345 -25.44204 -23.30789 -21.56289 -20.71904 -20.33512 -19.58734 -17.85507 -17.47373 -16.92348 -16.27879 -15.94293 -15.84361 -15.55243 -15.12578 -14.81214 -14.79138 -14.56239 -13.98891 -13.91055 -13.72916 -13.19225 -13.12825 -12.87652 -12.69663 -12.61914 -12.53834 -12.33597 -12.13248 -12.08627 -11.83167 -11.52842 -11.28260 -11.13944 -11.07561 -11.05376 -11.02193 -10.75530 -10.70746 -10.02811 -9.81165 -9.40100 -9.37037 -9.06904 -8.86649 -8.23527 -6.49857 -6.21572 -3.92105 2.26994 2.77793 3.04928 3.10735 3.22577 3.28278 3.32651 3.70480 4.07134 4.19705 4.20728 4.24545 4.29900 4.40706 4.43795 4.48705 4.80634 4.89347 4.96474 5.01814 5.06367 5.13646 5.16188 5.18820 5.30475 5.32952 5.37091 5.39156 5.45870 5.47399 5.58069 5.63961 5.64458 5.72075 5.77661 5.81529 5.90044 5.90682 5.98846 6.14804 6.20022 6.63223 7.11646 7.59782 7.71925 7.86150 8.35412 8.62127 9.23836 10.85875 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001595 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.439081 B =17549.649256 C =17836.401619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.146 4.146 6 C 0.517 3.483 7 O -0.540 6.540 8 N -0.720 5.720 9 C 0.121 3.879 10 C -0.146 4.146 11 C -0.120 4.120 12 C 0.134 3.866 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.090 0.910 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.376 -17.046 17.860 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.134 4.134 4 H 0.116 0.884 5 C -0.203 4.203 6 C 0.304 3.696 7 O -0.416 6.416 8 N -0.371 5.371 9 C 0.016 3.984 10 C -0.185 4.185 11 C -0.139 4.139 12 C 0.010 3.990 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.394 6.394 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.236 0.764 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.675 -15.778 18.170 31.727 hybrid contribution 1.328 -1.530 -1.243 2.377 sum -19.347 -17.309 16.927 30.991 Atomic orbital electron populations 1.21850 0.95403 1.02008 1.01900 1.21343 0.95419 0.94082 1.03527 1.21386 0.91787 0.99617 1.00650 0.88439 1.21832 1.02527 1.00144 0.95806 1.20770 0.90060 0.83640 0.75170 1.90702 1.70354 1.31475 1.49106 1.46044 1.07430 1.08751 1.74866 1.22522 0.79625 0.99353 0.96886 1.23570 0.97730 1.00350 0.96855 1.22609 0.97903 0.96706 0.96719 1.21225 0.92265 0.95580 0.89933 1.45994 1.44500 1.10689 1.38067 1.20311 0.82083 0.83956 0.81946 1.90698 1.56740 1.25226 1.66723 1.23532 0.99605 1.08154 0.99141 1.85383 1.53661 1.01753 1.42652 1.22875 1.27081 0.96774 1.21677 0.90924 1.24987 0.96907 0.94464 0.97184 1.70014 1.41744 1.00596 1.37951 0.86170 0.80322 0.78262 0.80757 1.20273 1.20741 1.19697 1.23321 0.98077 0.97658 0.98317 0.92407 0.92423 0.92648 0.91101 0.91343 0.91056 0.92038 0.92160 0.76420 0.86778 0.90751 0.89354 0.88096 0.91570 0.91470 0.76800 0.89229 0.89249 0.92188 0.89115 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.67 37.16 0.36 -0.34 16 2 C -0.11 -0.68 4.75 -26.73 -0.13 -0.80 16 3 C -0.11 -0.63 2.72 -91.77 -0.25 -0.88 16 4 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.57 8.85 37.16 0.33 -0.24 16 6 C 0.52 4.36 7.15 -10.98 -0.08 4.28 16 7 O -0.54 -6.78 15.54 5.56 0.09 -6.69 16 8 N -0.72 -4.62 5.26 -53.01 -0.28 -4.90 16 9 C 0.12 0.86 4.22 -67.12 -0.28 0.58 16 10 C -0.15 -1.11 7.43 -25.92 -0.19 -1.30 16 11 C -0.12 -0.88 3.75 -89.81 -0.34 -1.21 16 12 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 13 N -0.74 -9.52 5.56 -60.29 -0.33 -9.86 16 14 C 0.53 9.83 7.85 -10.99 -0.09 9.74 16 15 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 16 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.14 -0.80 7.39 -25.92 -0.19 -0.99 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.22 6.56 -51.93 -0.34 -0.12 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.56 7.95 -51.93 -0.41 0.14 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.21 6.56 -51.93 -0.34 -0.13 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.17 7.56 -51.93 -0.39 -0.22 16 35 H 0.40 1.62 8.13 -40.82 -0.33 1.29 16 36 H 0.11 0.98 7.50 -51.93 -0.39 0.59 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.09 0.47 8.07 -51.93 -0.42 0.06 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -36.51 399.56 -9.37 -45.87 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.99 Total: -0.22 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.46 Total: -5.64 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.12 Total: -40.22 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.51 -9.37 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755929628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.092 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds