Wall clock time and date at job start Tue Mar 31 2020 15:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.08994 * 109.47342 * 304.99397 * 3 2 1 5 5 C 1.53000 * 109.47131 * 64.99918 * 3 2 1 6 6 C 1.50701 * 109.46769 * 184.99912 * 3 2 1 7 7 O 1.21280 * 120.00269 * 0.02562 * 6 3 2 8 8 N 1.34781 * 119.99932 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99985 * 179.97438 * 8 6 3 10 10 C 1.53785 * 113.68813 * 105.94035 * 9 8 6 11 11 C 1.53779 * 87.08093 * 139.99098 * 10 9 8 12 12 C 1.52999 * 113.61451 * 220.01770 * 11 10 9 13 13 N 1.46504 * 109.47047 * 272.49902 * 12 11 10 14 14 C 1.34776 * 120.00093 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00176 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47012 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99764 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00100 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99561 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00394 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99610 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47157 * 89.99978 * 22 20 18 24 24 H 1.48500 * 109.47133 * 210.00098 * 22 20 18 25 25 H 1.48505 * 109.47111 * 329.99955 * 22 20 18 26 26 C 1.53781 * 113.61339 * 203.47543 * 9 8 6 27 27 H 1.08999 * 109.46938 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46959 * 300.00343 * 1 2 3 29 29 H 1.09004 * 109.46822 * 59.99740 * 1 2 3 30 30 H 1.08999 * 109.46959 * 239.99657 * 2 1 3 31 31 H 1.08996 * 109.46746 * 119.99943 * 2 1 3 32 32 H 1.08993 * 109.47024 * 299.99935 * 5 3 2 33 33 H 1.09003 * 109.46984 * 60.00200 * 5 3 2 34 34 H 1.09001 * 109.46995 * 179.97438 * 5 3 2 35 35 H 0.96998 * 119.99866 * 0.02562 * 8 6 3 36 36 H 1.09002 * 112.85221 * 334.67013 * 9 8 6 37 37 H 1.09003 * 113.60734 * 254.54218 * 10 9 8 38 38 H 1.08996 * 113.61146 * 25.43716 * 10 9 8 39 39 H 1.09005 * 113.69135 * 89.12376 * 11 10 9 40 40 H 1.09003 * 109.47100 * 32.49589 * 12 11 10 41 41 H 1.08995 * 109.47213 * 152.50009 * 12 11 10 42 42 H 0.97002 * 119.99937 * 359.97438 * 13 12 11 43 43 H 1.09003 * 109.46987 * 300.00052 * 16 14 13 44 44 H 1.08995 * 109.46871 * 60.00193 * 16 14 13 45 45 H 0.96999 * 120.00169 * 180.02562 * 21 20 18 46 46 H 1.09005 * 113.61302 * 334.48230 * 26 9 8 47 47 H 1.08993 * 113.62030 * 105.39076 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3951 -0.2046 8 7 4.2149 2.6118 -0.1458 9 6 5.6750 2.6135 -0.2656 10 6 6.1805 3.0392 -1.6542 11 6 7.2887 3.8175 -0.9254 12 6 7.5923 5.1809 -1.5498 13 7 8.5941 5.0217 -2.6069 14 6 9.0180 6.0965 -3.3009 15 8 8.5698 7.1953 -3.0507 16 6 10.0489 5.9329 -4.3879 17 16 10.4068 7.5455 -5.1276 18 6 11.6057 7.0718 -6.3289 19 1 11.8972 6.0360 -6.4216 20 6 12.1753 8.0298 -7.1560 21 7 11.8205 9.2922 -7.0427 22 14 13.4458 7.5275 -8.4301 23 1 12.7624 7.1917 -9.7050 24 1 14.3911 8.6502 -8.6560 25 1 14.1939 6.3411 -7.9421 26 6 6.3364 3.8902 0.2799 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5490 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 34 1 1.9989 3.1541 1.3075 35 1 3.7326 3.4509 -0.0816 36 1 6.1310 1.6943 0.1022 37 1 6.5527 2.2103 -2.2563 38 1 5.4826 3.6775 -2.1961 39 1 8.1865 3.2286 -0.7376 40 1 6.6789 5.5975 -1.9746 41 1 7.9765 5.8540 -0.7835 42 1 8.9523 4.1428 -2.8072 43 1 10.9623 5.5169 -3.9626 44 1 9.6652 5.2592 -5.1540 45 1 12.2184 9.9617 -7.6210 46 1 5.6811 4.7612 0.2667 47 1 6.8344 3.7484 1.2390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755929628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:46 Heat of formation + Delta-G solvation = -106.769719 kcal Electronic energy + Delta-G solvation = -24458.553337 eV Core-core repulsion = 20766.107113 eV Total energy + Delta-G solvation = -3692.446224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40031 -40.60802 -39.52067 -36.35820 -35.77229 -34.58709 -34.27611 -31.39613 -30.52008 -28.26146 -27.57760 -26.68374 -26.21529 -23.98359 -22.18982 -21.85425 -21.11558 -20.31659 -19.73916 -18.04676 -17.89550 -17.61809 -16.88550 -16.80144 -16.69091 -16.49913 -16.11793 -15.72542 -15.43819 -15.22343 -14.70869 -14.64592 -14.43005 -14.38063 -13.71082 -13.51409 -13.41425 -13.24603 -13.16522 -12.97011 -12.94190 -12.88033 -12.63136 -12.55739 -12.50727 -12.22808 -11.79468 -11.71177 -11.64910 -11.59938 -11.38372 -11.14351 -10.92886 -10.67202 -10.27780 -10.09199 -9.98006 -8.66497 -8.34720 -6.12749 1.27586 1.42450 1.47440 1.57981 1.62762 1.63223 2.20538 2.27185 2.36180 2.99476 3.31854 3.48250 3.58283 3.70052 3.80135 3.83807 3.88615 4.00742 4.03519 4.27406 4.30123 4.39966 4.47764 4.51809 4.53599 4.61650 4.71094 4.73998 4.78352 4.84591 4.88030 4.98548 5.03375 5.03962 5.09889 5.12037 5.20630 5.30457 5.37709 5.41870 5.49006 5.50146 5.63250 6.19802 6.52570 6.57864 7.06698 7.26278 7.27415 8.74510 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001595 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.439081 B =17549.649256 C =17836.401619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.108 4.108 4 H 0.115 0.885 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.588 6.588 8 N -0.709 5.709 9 C 0.120 3.880 10 C -0.146 4.146 11 C -0.110 4.110 12 C 0.134 3.866 13 N -0.712 5.712 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.259 1.259 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.102 0.898 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.748 -18.244 18.298 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.129 4.129 4 H 0.133 0.867 5 C -0.199 4.199 6 C 0.300 3.700 7 O -0.468 6.468 8 N -0.360 5.360 9 C 0.014 3.986 10 C -0.185 4.185 11 C -0.129 4.129 12 C 0.010 3.990 13 N -0.366 5.366 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.282 4.282 17 S 0.076 5.924 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.183 1.183 26 C -0.160 4.160 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.252 0.748 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.069 -17.004 18.637 32.869 hybrid contribution 1.374 -1.238 -1.297 2.259 sum -19.695 -18.241 17.340 31.958 Atomic orbital electron populations 1.21820 0.93713 1.02318 1.02814 1.21316 0.96826 0.94458 1.01816 1.21413 0.89691 0.99436 1.02387 0.86704 1.21835 1.03427 1.00514 0.94151 1.21319 0.91248 0.83290 0.74189 1.90680 1.71471 1.33205 1.51487 1.45972 1.07283 1.08970 1.73728 1.22419 0.80028 0.99352 0.96761 1.23558 0.97837 1.00082 0.96990 1.22546 0.98563 0.94660 0.97121 1.21389 0.91091 0.97558 0.88958 1.45780 1.43737 1.10000 1.37064 1.20040 0.81736 0.84430 0.81982 1.90686 1.58428 1.27274 1.68185 1.23385 1.01294 1.03613 0.99927 1.85543 1.54344 1.08493 1.44018 1.23216 1.27165 0.97344 1.21864 0.89971 1.26111 0.99153 0.94287 0.99481 1.70176 1.43300 1.02006 1.39236 0.84961 0.77224 0.78268 0.77565 1.19330 1.20238 1.18261 1.23280 0.97442 0.97215 0.98059 0.92498 0.91181 0.91960 0.93217 0.92761 0.89626 0.93045 0.90665 0.74768 0.88294 0.91430 0.89501 0.86919 0.92125 0.91965 0.74790 0.87271 0.87365 0.91975 0.87938 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 71.98 0.70 -0.47 16 2 C -0.11 -1.34 4.75 30.60 0.15 -1.20 16 3 C -0.11 -1.08 2.72 -11.54 -0.03 -1.11 16 4 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.14 -0.81 8.85 71.98 0.64 -0.18 16 6 C 0.51 8.33 7.15 87.66 0.63 8.96 16 7 O -0.59 -15.14 15.54 -3.03 -0.05 -15.19 16 8 N -0.71 -8.02 5.26 -440.02 -2.31 -10.34 16 9 C 0.12 1.52 4.22 45.52 0.19 1.71 16 10 C -0.15 -1.97 7.43 31.12 0.23 -1.74 16 11 C -0.11 -1.35 3.75 -10.27 -0.04 -1.39 16 12 C 0.13 2.61 5.51 86.38 0.48 3.08 16 13 N -0.71 -16.99 5.56 -463.06 -2.57 -19.56 16 14 C 0.53 19.27 7.85 87.66 0.69 19.96 16 15 O -0.57 -25.92 15.86 -3.03 -0.05 -25.96 16 16 C -0.13 -5.15 6.16 71.24 0.44 -4.72 16 17 S -0.15 -8.39 20.57 -56.49 -1.16 -9.56 16 18 C -0.55 -31.37 9.50 67.95 0.65 -30.72 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 22 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 C -0.12 -1.13 7.39 31.12 0.23 -0.90 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.38 6.56 -2.39 -0.02 0.37 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.82 7.95 -2.39 -0.02 0.80 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.28 6.56 -2.39 -0.02 0.26 16 33 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.21 7.56 -2.39 -0.02 0.20 16 35 H 0.41 2.36 8.13 -92.71 -0.75 1.60 16 36 H 0.10 1.64 7.50 -2.39 -0.02 1.62 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.23 7.90 -2.39 -0.02 1.21 16 39 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 1.30 7.84 -2.39 -0.02 1.29 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.42 7.24 8.47 -92.71 -0.79 6.46 16 43 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.10 0.76 8.07 -2.38 -0.02 0.74 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -82.38 399.56 1.00 -81.38 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.57 Total: 16.67 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.40 Total: -7.41 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -4.60 Total: -85.55 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.10 Total: -41.15 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.56 kcal Total: -82.38 1.00 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755929628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.389 kcal (2) G-P(sol) polarization free energy of solvation -82.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds